>PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 325

 Score =  105 bits (263), Expect = 2e-23
 Identities = 54/57 (94%), Positives = 55/57 (96%)
 Frame = +3

Query: 51  MAASLQAAATLMPAKIGGRASSVRPSSHVARAFGVDAAARITCSLQSDIREVASKCA 221
           MAASLQAAAT+MPAKIGGRASS RPSSHVARAFGVDA ARITCSLQSDIREVASKCA
Sbjct: 1   MAASLQAAATVMPAKIGGRASSARPSSHVARAFGVDAGARITCSLQSDIREVASKCA 57

>PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score = 66.6 bits (161), Expect = 2e-11
 Identities = 33/59 (55%), Positives = 47/59 (79%), Gaps = 3/59 (5%)
 Frame = +3

Query: 51  MAASLQAAATLMPAKIGGRASS-VRPSSHVARAFGVD--AAARITCSLQSDIREVASKC 218
           MA+SLQAAATL+PAK+G  A + +R +SH+++AFG D   A R+TCS+ SD+R++A KC
Sbjct: 1   MASSLQAAATLIPAKVGAPARTHLRSNSHLSKAFGFDNSTAGRLTCSINSDLRDIAQKC 59

>PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 33/59 (55%), Positives = 46/59 (77%), Gaps = 3/59 (5%)
 Frame = +3

Query: 51  MAASLQAAATLM-PAKIGGRAS-SVRPSSHVARAFGVD-AAARITCSLQSDIREVASKC 218
           MAASLQAAATLM P K+G R +  +R +  V++AFGV+  + R+TCSLQ++I+E+A KC
Sbjct: 1   MAASLQAAATLMQPTKVGVRNNLQLRSAQSVSKAFGVEQGSGRLTCSLQTEIKELAQKC 59

>PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 333

 Score = 58.2 bits (139), Expect = 6e-09
 Identities = 32/62 (51%), Positives = 48/62 (77%), Gaps = 6/62 (9%)
 Frame = +3

Query: 51  MAASLQAAATLM-PAKIGGRAS----SVRPSSHVARAFGVD-AAARITCSLQSDIREVAS 212
           MAASLQAAATLM P K+GG ++     +R S  V++AFG++ +A+R++CSLQ+D+++ A 
Sbjct: 1   MAASLQAAATLMQPTKVGGVSARNNLQLRSSQSVSKAFGLEPSASRLSCSLQTDLKDFAQ 60

Query: 213 KC 218
           KC
Sbjct: 61  KC 62

>PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 30/58 (51%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
 Frame = +3

Query: 51  MAASLQAAATLM-PAKIGGRASSVRPSSHVARAFGVDA-AARITCSLQSDIREVASKC 218
           MAASLQAAATLM P K+      ++ +  V++AFG++   A++TCSLQSD +E+A KC
Sbjct: 1   MAASLQAAATLMQPTKLRSNTLQLKSNQSVSKAFGLEHYGAKVTCSLQSDFKELAHKC 58

>PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 332

 Score = 54.3 bits (129), Expect = 8e-08
 Identities = 32/61 (52%), Positives = 46/61 (75%), Gaps = 6/61 (9%)
 Frame = +3

Query: 51  MAASLQAAATLM-PAKIGGRAS----SVRPSSHVARAFGVD-AAARITCSLQSDIREVAS 212
           MAASLQAAATLM P K+G   +     +R +  V++AFGV+ AAAR+TCSLQ++++++A 
Sbjct: 1   MAASLQAAATLMQPTKVGVAPARNNLQLRSAQSVSKAFGVEPAAARLTCSLQTELKDLAQ 60

Query: 213 K 215
           K
Sbjct: 61  K 61

>PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chloroplast|
           precursor (OEE1) (33 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 33 kDa subunit) (33 kDa
           thylakoid membrane protein)
          Length = 331

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 31/62 (50%), Positives = 43/62 (69%), Gaps = 5/62 (8%)
 Frame = +3

Query: 51  MAASLQAAAT-LMPAKIGGRASS---VRPSSHVARAFGVDAA-ARITCSLQSDIREVASK 215
           MA SLQAAAT L PAKI    S    +R +  V ++FG+D++ AR+TCSL SD+++ A K
Sbjct: 1   MATSLQAAATFLQPAKIAASPSRNVHLRSNQTVGKSFGLDSSQARLTCSLHSDLKDFAGK 60

Query: 216 CA 221
           C+
Sbjct: 61  CS 62

>PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 332

 Score = 51.2 bits (121), Expect = 7e-07
 Identities = 29/61 (47%), Positives = 45/61 (73%), Gaps = 5/61 (8%)
 Frame = +3

Query: 51  MAASLQAAAT-LMPAKIGGRAS-SVRPSSHVARAFGVDAAA---RITCSLQSDIREVASK 215
           MAASLQA+ T L P K+  R +  +R + +V +AFGV++A+   R++ SLQSD++E+A+K
Sbjct: 1   MAASLQASTTFLQPTKVASRNTLQLRSTQNVCKAFGVESASSGGRLSLSLQSDLKELANK 60

Query: 216 C 218
           C
Sbjct: 61  C 61

>PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chloroplast|
           precursor (OEE1) (33 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 33 kDa subunit) (33 kDa
           thylakoid membrane protein)
          Length = 332

 Score = 45.1 bits (105), Expect = 5e-05
 Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 6/63 (9%)
 Frame = +3

Query: 51  MAASLQAAAT-LMPAKIG---GRASS-VRPSSHVARAFGVD-AAARITCSLQSDIREVAS 212
           MAASLQ+ AT L  AKI     R SS +R +  V ++FG++ ++AR+TCS QSD ++   
Sbjct: 1   MAASLQSTATFLQSAKIATAPSRGSSHLRSTQAVGKSFGLETSSARLTCSFQSDFKDFTG 60

Query: 213 KCA 221
           KC+
Sbjct: 61  KCS 63

>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = -2

Query: 167  GGSVDAERPGDVRRRPHGG--GPAADLGRHQRGRG--LERRCHVGRWAWYAG 24
            G ++ A  PG +R R  GG  G     GR  RGRG    RR   G   W AG
Sbjct: 1378 GAALPARGPGGLRGRGRGGRGGGGGGGGRGPRGRGGRRRRRWRPGAGEWGAG 1429

>ZFNL1_ARATH (Q84W91) Zinc finger CCCH type domain-containing protein ZFN-like 1|
          Length = 468

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = +3

Query: 3   NHE*DRSSRVPSPPTNMAASLQAAATLMPAKIGGRASSVR------PSSHVARAFG 152
           +H     + VP PP +      +  +LMP + GG +SS+R      P S++  A+G
Sbjct: 160 HHPQPAGTTVPPPPASAPQFYPSVQSLMPDQYGGPSSSLRVARTLLPGSYMQGAYG 215

>CRP_MOUSE (P14847) C-reactive protein precursor|
          Length = 225

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 24  SRVPSPPTNMAASLQAAATLMPAKIGGRASSVRPSSHVARAFGVDAA 164
           S +P  PT++ AS ++A  ++   I G+A  VR S H     G DA+
Sbjct: 106 SEIPEAPTHICASWESATGIVEFWIDGKA-KVRKSLHKGYTVGPDAS 151

>AVEN_HUMAN (Q9NQS1) Cell death regulator Aven|
          Length = 362

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -2

Query: 182 GARDPGGSVDAERPG---DVRRRPHGGGPAADLGRHQRGRG 69
           G   PGG   +ERPG    V R   GGG     GR  RGRG
Sbjct: 16  GRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRG 56

>XYNA_ASPKA (P33559) Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) (Xylanase|
           A) (1,4-beta-D-xylan xylanohydrolase A)
          Length = 327

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 166 AAASTPNARATCDDGRTEEARPPILAG-ISVAAAWRDAAMLVGGLGTR 26
           A A+ PNA+   +D   + A  P LAG +S    W +A + + G+G++
Sbjct: 186 ARAADPNAKLYINDYNLDSASYPKLAGMVSHVKKWIEAGIPIDGIGSQ 233

>KCNC3_HUMAN (Q14003) Potassium voltage-gated channel subfamily C member 3|
           (Voltage-gated potassium channel subunit Kv3.3)
           (KSHIIID)
          Length = 757

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = -2

Query: 179 ARDPGGSVDAERPGDVRRRPHGGGPAADLGRHQRGRG 69
           A  P G      PG  R  P  G PAA +GRH  G G
Sbjct: 49  AASPAGPPAPRGPGGRRAEPCPGLPAAAMGRHGGGGG 85

>ADRB1_MACMU (P47899) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1|
           adrenoreceptor)
          Length = 480

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = +3

Query: 24  SRVPSPPTNMAASLQAAATLMPAKIGGRASSVRPSSHVA 140
           S VP+PP        AAAT  P  + GRA   RPS  VA
Sbjct: 282 SPVPAPPPGPPRPAAAAATTAPL-VNGRAGKRRPSRLVA 319

>RP1L1_MOUSE (Q8CGM2) Retinitis pigmentosa 1-like 1 protein (Retinitis pigmentosa|
            1-like protein 1)
          Length = 1859

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +3

Query: 42   PTNMAASLQAAATLMPAKIGGRASSVRPSSHVARAFGVDAAARITC 179
            PT +AAS Q    L+ +K G  +S    SS VA+     A A I C
Sbjct: 1044 PTKVAASTQIMKALLGSKPGRPSSLPEVSSTVAQRLSSSAGAFIAC 1089

>SPEG_HUMAN (Q15772) Striated muscle preferentially expressed protein kinase|
           (EC 2.7.11.1) (Aortic preferentially expressed protein
           1) (APEG-1)
          Length = 3223

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -2

Query: 179 ARDPGGSVDAERPGDVRRRPHGGGPAADLGRHQRGRG 69
           A  P     AE+PGD   RP   GPA   GR + G G
Sbjct: 552 AAQPPSPSSAEKPGDEPGRPRSRGPA---GRTEPGEG 585

>CHS4_NEUCR (Q01285) Chitin synthase 4 (EC 2.4.1.16) (Chitin-UDP|
           acetyl-glucosaminyl transferase 4) (Class-IV chitin
           synthase 4)
          Length = 1195

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 15  DRSSRVPSPPTNMAASLQAAATLMPAKIGGRASSVRPSSHVARAFG 152
           +R +R P  PT MA+   A   L P  I G+ +  R S   + A+G
Sbjct: 567 ERGNRKPGLPTTMASQNAAGQLLHPGTIYGQGNESRSSFLKSDAYG 612

>CAF1_EPHMU (P18856) Collagen EMF1-alpha precursor (Fibrillar collagen)|
           (Fragment)
          Length = 547

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 170 PGGSVDAERPGDVRRRPHGGGPAADLGR 87
           PG    A +PG +R +P   GP  DLGR
Sbjct: 54  PGPVGAAGKPGSIRGQPGPPGPPGDLGR 81

>34KD_MYCTU (P65637) 34 kDa antigenic protein homolog|
          Length = 303

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 23 FPRTKPTDQHGSVSPSRGHADAG 91
          +P+ +P   +G V+PS  HAD G
Sbjct: 10 YPQAQPAGSYGGVTPSFAHADEG 32

>34KD_MYCBO (P65638) 34 kDa antigenic protein homolog|
          Length = 303

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 23 FPRTKPTDQHGSVSPSRGHADAG 91
          +P+ +P   +G V+PS  HAD G
Sbjct: 10 YPQAQPAGSYGGVTPSFAHADEG 32

>ERYA2_SACER (Q03132) Erythronolide synthase, modules 3 and 4 (EC 2.3.1.94) (ORF|
            2) (6-deoxyerythronolide B synthase II) (DEBS 2)
          Length = 3566

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 57   ASLQAAATLMPAKIGGRASSVRPSSHVARAFGVDAAARITCSLQSDIREV 206
            A L  A  + PA + G +     ++HVA A  ++AAA++       +RE+
Sbjct: 2087 AELWRAHGVTPAAVVGHSQGEIAAAHVAGALSLEAAAKVVALRSQVLREL 2136

>BAG3_MOUSE (Q9JLV1) BAG family molecular chaperone regulator 3 (BCL-2-binding|
           athanogene-3) (BAG-3) (Bcl-2-binding protein Bis)
          Length = 577

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 24  SRVPSPPTNMAASLQAAATLMPAK 95
           S VPSPP N+AA  +AA +  PA+
Sbjct: 386 SAVPSPPKNVAAEQKAAPSPAPAE 409

>RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 550

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 16/31 (51%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
 Frame = -2

Query: 182 GARDPGGSVDAER------PGDVRRRPHGGG 108
           GAR PGG   A R      PG   RRP GGG
Sbjct: 516 GARGPGGPGGAPRGPGGRPPGGGNRRPPGGG 546

>KCNC3_RAT (Q01956) Potassium voltage-gated channel subfamily C member 3|
           (Voltage-gated potassium channel subunit Kv3.3)
           (KSHIIID)
          Length = 889

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 179 ARDPGGSVDAERPGDVRRRPHGGGPAADLGRHQRGRG 69
           A  P G+  +  PG  R  P  G PA  +GRH  G G
Sbjct: 51  AASPAGAPLSCGPGGRRAEPCSGLPAVAMGRHGGGGG 87

>VGLG_HHV2H (P13290) Glycoprotein G|
          Length = 699

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 139 PGRSASTLPPGSRAPCNPTSGRSQASAP 222
           PG    TLPPG   P  P + R  A AP
Sbjct: 597 PGPIRPTLPPGILGPLAPNTPRPPAQAP 624

>TNPA_STRFR (P20189) Transposase for transposon Tn4556|
          Length = 892

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
 Frame = -3

Query: 142 RATCDDGRTEEA----RPPILAGISVAAAWRDAAMLVGGLG 32
           RA  DDGR  E        +  G + AAAW D A   GGLG
Sbjct: 4   RAGLDDGRGAEGVVRRGSRVAEGAAGAAAWGDDADEAGGLG 44

>EFG1_CANAL (P43064) Enhanced filamentous growth protein|
          Length = 552

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +3

Query: 21  SSRVPSPPTNMAASLQAAATLMPAKIGGRASSVRPSSHVARAFGVDAAARIT 176
           +S  P PP  +AA+   AAT +     G  +S+  +S  +   G   A   T
Sbjct: 329 ASAPPPPPPPVAAATTTAATAISKSSSGNGNSISATSGGSNVSGASGAGSTT 380

>LIFO_PSEAE (Q01725) Lipase chaperone (Lipase foldase) (Lipase helper protein)|
           (Lipase modulator)
          Length = 340

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +3

Query: 36  SPPTNMAASLQAAATLMPAKIGGRASSVRPSSHVARAFGVDAAARITCSLQSDIREV 206
           +PP   A     A  +MPAK+    +S R +S V  +F VDA+  +   +  DIR +
Sbjct: 43  APPAASAGEAVPAPQVMPAKVAPLPTSFRGTS-VDGSFSVDASGNLL--ITRDIRNL 96


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.307    0.122    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,471,471
Number of Sequences: 219361
Number of extensions: 570662
Number of successful extensions: 2012
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2000
length of database: 80,573,946
effective HSP length: 49
effective length of database: 69,825,257
effective search space used: 1675806168
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)