ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet57b09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK110066.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.3
2gb|AC100427.25| Mus musculus chromosome 10, clone RP23-136J15, c... 38 5.3
3gb|AY573924.1| Drosophila mauritiana hybrid male rescue (Hmr) ge... 38 5.3
4gb|AY568396.2| Drosophila simulans isolate DLWolfskill_7 Hmr gen... 38 5.3
5gb|AY568395.2| Drosophila simulans isolate DLWolfskill_6 Hmr gen... 38 5.3
6gb|AY568394.2| Drosophila simulans isolate DLWolfskill_5 Hmr gen... 38 5.3
7gb|AY568393.2| Drosophila simulans isolate DLWolfskill_4 Hmr gen... 38 5.3
8gb|AY568392.2| Drosophila simulans isolate DLWolfskill_1 Hmr gen... 38 5.3
9gb|AY568391.2| Drosophila simulans isolate DLp92 Hmr gene, parti... 38 5.3
10gb|AY260054.1| Drosophila sechellia Hmr (Hmr) gene, complete cds 38 5.3
11gb|AY260053.1| Drosophila simulans Hmr (Hmr) gene, complete cds 38 5.3
12gb|AY260052.1| Drosophila mauritiana Hmr (Hmr) gene, complete cds 38 5.3
13emb|AJ569350.1|DSI569350 Drosophila simulans chromosome X fragme... 38 5.3

>dbj|AK110066.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-160-E03, full
           insert sequence
          Length = 3336

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 66  ggtcacgagcgctgcgcgcc 85
           ||||||||||||||||||||
Sbjct: 840 ggtcacgagcgctgcgcgcc 821



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>gb|AC100427.25| Mus musculus chromosome 10, clone RP23-136J15, complete sequence
          Length = 206339

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 29     tggctccaagagagctact 47
              |||||||||||||||||||
Sbjct: 106435 tggctccaagagagctact 106417



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>gb|AY573924.1| Drosophila mauritiana hybrid male rescue (Hmr) gene, complete
            sequence
          Length = 6642

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 63   agcggtcacgagcgctgcg 81
            |||||||||||||||||||
Sbjct: 1608 agcggtcacgagcgctgcg 1626



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>gb|AY568396.2| Drosophila simulans isolate DLWolfskill_7 Hmr gene, partial sequence
          Length = 5237

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 63   agcggtcacgagcgctgcg 81
            |||||||||||||||||||
Sbjct: 1625 agcggtcacgagcgctgcg 1643



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>gb|AY568395.2| Drosophila simulans isolate DLWolfskill_6 Hmr gene, partial sequence
          Length = 5237

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 63   agcggtcacgagcgctgcg 81
            |||||||||||||||||||
Sbjct: 1625 agcggtcacgagcgctgcg 1643



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>gb|AY568394.2| Drosophila simulans isolate DLWolfskill_5 Hmr gene, partial sequence
          Length = 5220

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 63   agcggtcacgagcgctgcg 81
            |||||||||||||||||||
Sbjct: 1626 agcggtcacgagcgctgcg 1644



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>gb|AY568393.2| Drosophila simulans isolate DLWolfskill_4 Hmr gene, partial sequence
          Length = 5220

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 63   agcggtcacgagcgctgcg 81
            |||||||||||||||||||
Sbjct: 1626 agcggtcacgagcgctgcg 1644



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>gb|AY568392.2| Drosophila simulans isolate DLWolfskill_1 Hmr gene, partial sequence
          Length = 5220

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 63   agcggtcacgagcgctgcg 81
            |||||||||||||||||||
Sbjct: 1626 agcggtcacgagcgctgcg 1644



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>gb|AY568391.2| Drosophila simulans isolate DLp92 Hmr gene, partial sequence
          Length = 5239

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 63   agcggtcacgagcgctgcg 81
            |||||||||||||||||||
Sbjct: 1625 agcggtcacgagcgctgcg 1643



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>gb|AY260054.1| Drosophila sechellia Hmr (Hmr) gene, complete cds
          Length = 5153

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 63   agcggtcacgagcgctgcg 81
            |||||||||||||||||||
Sbjct: 1541 agcggtcacgagcgctgcg 1559



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>gb|AY260053.1| Drosophila simulans Hmr (Hmr) gene, complete cds
          Length = 5374

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 63   agcggtcacgagcgctgcg 81
            |||||||||||||||||||
Sbjct: 1659 agcggtcacgagcgctgcg 1677



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>gb|AY260052.1| Drosophila mauritiana Hmr (Hmr) gene, complete cds
          Length = 5468

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 63   agcggtcacgagcgctgcg 81
            |||||||||||||||||||
Sbjct: 1652 agcggtcacgagcgctgcg 1670



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>emb|AJ569350.1|DSI569350 Drosophila simulans chromosome X fragment, ID 191_SIM
          Length = 432

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 63  agcggtcacgagcgctgcg 81
           |||||||||||||||||||
Sbjct: 371 agcggtcacgagcgctgcg 353


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 476,962
Number of Sequences: 3902068
Number of extensions: 476962
Number of successful extensions: 33602
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33588
Number of HSP's gapped (non-prelim): 14
length of query: 116
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 95
effective length of database: 17,151,101,840
effective search space: 1629354674800
effective search space used: 1629354674800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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