ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet57b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PANB_MYCLE (Q9CBT0) 3-methyl-2-oxobutanoate hydroxymethyltransfe... 28 7.0
2POLG_LMV0 (P31999) Genome polyprotein [Contains: P1 proteinase (... 28 7.0
32ACC_HUMAN (Q9Y5P8) Serine/threonine-protein phosphatase 2A 48 k... 28 7.0
4VATL_ENTHI (Q24810) Vacuolar ATP synthase 16 kDa proteolipid sub... 28 7.0

>PANB_MYCLE (Q9CBT0) 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC|
           2.1.2.11) (Ketopantoate hydroxymethyltransferase)
          Length = 286

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = -3

Query: 105 TIGVGEGLVCSACGLVWSGPAFGFAGEGDGRVWR 4
           TIG+G GL C A  LVW       AG   G+V R
Sbjct: 222 TIGIGAGLNCDAQVLVWQ----DMAGLSSGKVAR 251



to top

>POLG_LMV0 (P31999) Genome polyprotein [Contains: P1 proteinase (N-terminal|
           protein); Helper component proteinase (EC 3.4.22.45)
           (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
           inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
           (6K2); Viral gen
          Length = 3255

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 130 RLVPAASEHDRSRRRACLQRVRSGLVRSGLRFCRRGGW 17
           RLV   + H+   RR    R+ +GL    +R   RGGW
Sbjct: 337 RLVKLKTAHEEGHRRRVDIRIPNGLRPIVMRISARGGW 374



to top

>2ACC_HUMAN (Q9Y5P8) Serine/threonine-protein phosphatase 2A 48 kDa|
          regulatory subunit B (PP2A, subunit B, PR48 isoform)
          Length = 414

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 16/29 (55%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = -3

Query: 87 GLVCSACG--LVWSGPAF-GFAGEGDGRV 10
          GLV  ACG  L W GP F G  GE  G V
Sbjct: 5  GLVAKACGCPLYWKGPLFYGAGGERTGSV 33



to top

>VATL_ENTHI (Q24810) Vacuolar ATP synthase 16 kDa proteolipid subunit (EC|
           3.6.3.14) (V-ATPase 16 kDa proteolipid subunit)
          Length = 177

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 123 YRRRASTIGVGEGLVCSACGLVWSGPAFGFAGE 25
           Y    + + +G GL C  CGL  SG A G +G+
Sbjct: 92  YSLNRAFLDLGAGLTCGLCGLA-SGMAIGISGD 123


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,353,055
Number of Sequences: 219361
Number of extensions: 303847
Number of successful extensions: 1260
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 80,573,946
effective HSP length: 21
effective length of database: 75,967,365
effective search space used: 1823216760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top