ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet57a04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_185693.1| Oryza sativa (japonica cultivar-group), Ozsa804... 64 3e-07
2ref|XM_476310.1| Oryza sativa (japonica cultivar-group), predic... 64 3e-07
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 64 3e-07
4dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic D... 64 3e-07
5dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic D... 64 3e-07
6ref|XM_476311.1| Oryza sativa (japonica cultivar-group), predic... 46 0.068
7dbj|AK102979.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.068
8ref|NM_185692.1| Oryza sativa (japonica cultivar-group), Ozsa804... 44 0.27
9ref|XM_476309.1| Oryza sativa (japonica cultivar-group), predic... 44 0.27
10gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 42 1.1
11gb|AC154316.3| Mus musculus BAC clone RP23-338D3 from chromosome... 42 1.1
12emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.1
13emb|BX640428.1| Bordetella parapertussis strain 12822, complete ... 42 1.1
14emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.1
15gb|AY119663.1| Drosophila melanogaster SD07726 full insert cDNA 42 1.1
16ref|NM_175954.1| Drosophila melanogaster CG33123-PA (CG33123) mR... 42 1.1
17gb|AC151346.2| Xenopus tropicalis clone ISB-384J24, complete seq... 42 1.1
18gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 42 1.1
19gb|AC009751.6|AC009751 Drosophila melanogaster, chromosome 2L, r... 42 1.1
20gb|AC008323.3|AC008323 Drosophila melanogaster, chromosome 2L, r... 42 1.1
21gb|AE003579.3| Drosophila melanogaster chromosome 2L, section 12... 42 1.1
22emb|CT030637.9| Mouse DNA sequence from clone RP23-123H11 on chr... 42 1.1
23ref|XM_426275.1| PREDICTED: Gallus gallus similar to Gab3 protei... 40 4.2
24ref|XM_952340.1| Neurospora crassa OR74A hypothetical protein (N... 40 4.2
25ref|XM_327493.1| Neurospora crassa OR74A hypothetical protein (N... 40 4.2
26emb|BX294027.1|NCB8G12 Neurospora crassa DNA linkage group V BAC... 40 4.2
27dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 40 4.2
28gb|AC171012.3| Gallus gallus BAC clone CH261-128I7 from chromoso... 40 4.2
29dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 4.2
30emb|AJ291316.1|OCU291316 Oryctolagus cuniculus partial mRNA for ... 40 4.2
31dbj|AP000886.3| Homo sapiens genomic DNA, chromosome 6q25.2, clo... 40 4.2
32dbj|AP003699.1| Homo sapiens genomic DNA, chromosome 6q25, clone... 40 4.2 
>ref|NM_185693.1| Oryza sativa (japonica cultivar-group), Ozsa8044 predicted mRNA
          Length = 1059

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                               
Query: 156 ctccgagatgcccgagcccatccccatcatcgacctcagccggctctctgcc 207
           |||||| ||||| |||||||||||| || |||||||||||||||| ||||||
Sbjct: 126 ctccgacatgcctgagcccatccccgtcgtcgacctcagccggctgtctgcc 177
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>ref|XM_476310.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 942

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                               
Query: 156 ctccgagatgcccgagcccatccccatcatcgacctcagccggctctctgcc 207
           |||||| ||||| |||||||||||| || |||||||||||||||| ||||||
Sbjct: 126 ctccgacatgcctgagcccatccccgtcgtcgacctcagccggctgtctgcc 177
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                   
Query: 156     ctccgagatgcccgagcccatccccatcatcgacctcagccggctctctgcc 207
               |||||| ||||| |||||||||||| || |||||||||||||||| ||||||
Sbjct: 3907430 ctccgacatgcctgagcccatccccgtcgtcgacctcagccggctgtctgcc 3907481



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                   
Query: 156     ctccgagatgcccgagcccatccccatcatcgacctcagccggctctctgcc 207
               |||||| ||||| |||||||||||| || |||||||||||||||| ||||||
Sbjct: 3857551 ctccgacatgcctgagcccatccccgtcgtcgacctcagccggctgtctgcc 3857602



 Score = 46.1 bits (23), Expect = 0.068
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                              
Query: 86      cgccggcgtgaaggagccaccgagccagtac 116
               |||||||||| ||||||||||||||| ||||
Sbjct: 3911444 cgccggcgtgcaggagccaccgagccggtac 3911474



 Score = 44.1 bits (22), Expect = 0.27
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                     
Query: 69      gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 122
               ||||||||||| | ||  ||||||||  ||||||||||||| | ||||||||||
Sbjct: 3904520 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 3904573



 Score = 44.1 bits (22), Expect = 0.27
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                     
Query: 69      gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 122
               ||||||||||| | ||  ||||||||  ||||||||||||| | ||||||||||
Sbjct: 3892697 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 3892750



 Score = 44.1 bits (22), Expect = 0.27
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                     
Query: 69      gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 122
               ||||||||||| | ||  ||||||||  ||||||||||||| | ||||||||||
Sbjct: 3854641 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 3854694
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>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0035I03
          Length = 153749

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                 
Query: 156   ctccgagatgcccgagcccatccccatcatcgacctcagccggctctctgcc 207
             |||||| ||||| |||||||||||| || |||||||||||||||| ||||||
Sbjct: 13306 ctccgacatgcctgagcccatccccgtcgtcgacctcagccggctgtctgcc 13357



 Score = 46.1 bits (23), Expect = 0.068
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 86    cgccggcgtgaaggagccaccgagccagtac 116
             |||||||||| ||||||||||||||| ||||
Sbjct: 17320 cgccggcgtgcaggagccaccgagccggtac 17350



 Score = 44.1 bits (22), Expect = 0.27
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                   
Query: 69    gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 122
             ||||||||||| | ||  ||||||||  ||||||||||||| | ||||||||||
Sbjct: 10396 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 10449
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>dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0015E04
          Length = 152046

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                  
Query: 156    ctccgagatgcccgagcccatccccatcatcgacctcagccggctctctgcc 207
              |||||| ||||| |||||||||||| || |||||||||||||||| ||||||
Sbjct: 115505 ctccgacatgcctgagcccatccccgtcgtcgacctcagccggctgtctgcc 115556



 Score = 44.1 bits (22), Expect = 0.27
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                    
Query: 69     gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 122
              ||||||||||| | ||  ||||||||  ||||||||||||| | ||||||||||
Sbjct: 150651 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 150704



 Score = 44.1 bits (22), Expect = 0.27
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                    
Query: 69     gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 122
              ||||||||||| | ||  ||||||||  ||||||||||||| | ||||||||||
Sbjct: 112595 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 112648
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>ref|XM_476311.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1065

 Score = 46.1 bits (23), Expect = 0.068
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 86  cgccggcgtgaaggagccaccgagccagtac 116
           |||||||||| ||||||||||||||| ||||
Sbjct: 48  cgccggcgtgcaggagccaccgagccggtac 78
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>dbj|AK102979.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115N23, full
           insert sequence
          Length = 1303

 Score = 46.1 bits (23), Expect = 0.068
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 86  cgccggcgtgaaggagccaccgagccagtac 116
           |||||||||| ||||||||||||||| ||||
Sbjct: 143 cgccggcgtgcaggagccaccgagccggtac 173
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>ref|NM_185692.1| Oryza sativa (japonica cultivar-group), Ozsa8043 predicted mRNA
          Length = 1164

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 69  gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 122
           ||||||||||| | ||  ||||||||  ||||||||||||| | ||||||||||
Sbjct: 34  gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 87
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>ref|XM_476309.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1053

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 69  gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 122
           ||||||||||| | ||  ||||||||  ||||||||||||| | ||||||||||
Sbjct: 34  gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 87
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 216     cgaggagttcgacaagctgcggtccgcgt 244
               |||||||||||||||||||  ||||||||
Sbjct: 1232501 cgaggagttcgacaagctgtcgtccgcgt 1232473
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>gb|AC154316.3| Mus musculus BAC clone RP23-338D3 from chromosome 14, complete sequence
          Length = 210286

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 260    tcttcctggctgttggacatggaagggag 288
              ||||| ||||||| |||||||||||||||
Sbjct: 115373 tcttcatggctgtaggacatggaagggag 115401
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>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16
          Length = 346274

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 207    cggcagcgccgaggagttcga 227
              |||||||||||||||||||||
Sbjct: 182766 cggcagcgccgaggagttcga 182786
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>emb|BX640428.1| Bordetella parapertussis strain 12822, complete genome; segment 6/14
          Length = 348525

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 207    cggcagcgccgaggagttcga 227
              |||||||||||||||||||||
Sbjct: 330146 cggcagcgccgaggagttcga 330166
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 216     cgaggagttcgacaagctgcggtccgcgt 244
               |||||||||||||||||||  ||||||||
Sbjct: 2548574 cgaggagttcgacaagctgtcgtccgcgt 2548546
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>gb|AY119663.1| Drosophila melanogaster SD07726 full insert cDNA
          Length = 3809

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 168  cgagcccatccccatcatcga 188
            |||||||||||||||||||||
Sbjct: 1397 cgagcccatccccatcatcga 1417
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>ref|NM_175954.1| Drosophila melanogaster CG33123-PA (CG33123) mRNA, complete cds
          Length = 3791

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 168  cgagcccatccccatcatcga 188
            |||||||||||||||||||||
Sbjct: 1408 cgagcccatccccatcatcga 1428
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>gb|AC151346.2| Xenopus tropicalis clone ISB-384J24, complete sequence
          Length = 81038

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 267   ggctgttggacatggaaggga 287
             |||||||||||||||||||||
Sbjct: 65617 ggctgttggacatggaaggga 65637
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 216    cgaggagttcgacaagctgcggtccgcgt 244
              |||||||||||||||||||  ||||||||
Sbjct: 214401 cgaggagttcgacaagctgtcgtccgcgt 214429
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>gb|AC009751.6|AC009751 Drosophila melanogaster, chromosome 2L, region 23F-24A, BAC clone
              BACR26A07, complete sequence
          Length = 172436

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 168    cgagcccatccccatcatcga 188
              |||||||||||||||||||||
Sbjct: 170384 cgagcccatccccatcatcga 170364
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>gb|AC008323.3|AC008323 Drosophila melanogaster, chromosome 2L, region 24D-24D, BAC clone
             BACR03G07, complete sequence
          Length = 170064

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 168   cgagcccatccccatcatcga 188
             |||||||||||||||||||||
Sbjct: 58306 cgagcccatccccatcatcga 58286
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>gb|AE003579.3| Drosophila melanogaster chromosome 2L, section 12 of 83 of the complete
             sequence
          Length = 304674

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 168   cgagcccatccccatcatcga 188
             |||||||||||||||||||||
Sbjct: 81523 cgagcccatccccatcatcga 81503
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>emb|CT030637.9| Mouse DNA sequence from clone RP23-123H11 on chromosome 14, complete
              sequence
          Length = 239552

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 260    tcttcctggctgttggacatggaagggag 288
              ||||| ||||||| |||||||||||||||
Sbjct: 191916 tcttcatggctgtaggacatggaagggag 191888
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>ref|XM_426275.1| PREDICTED: Gallus gallus similar to Gab3 protein; DOS/Gab family
            member 3 (LOC428717), mRNA
          Length = 2973

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 170  agcccatccccatcatcgacctca 193
            ||||||||| ||||||||||||||
Sbjct: 1376 agcccatccgcatcatcgacctca 1399
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>ref|XM_952340.1| Neurospora crassa OR74A hypothetical protein (NCU07208.1) partial
           mRNA
          Length = 696

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 cgccgaggagttcgacaagc 232
           ||||||||||||||||||||
Sbjct: 126 cgccgaggagttcgacaagc 145
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>ref|XM_327493.1| Neurospora crassa OR74A hypothetical protein (NCU07208.1) partial
           mRNA
          Length = 696

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 cgccgaggagttcgacaagc 232
           ||||||||||||||||||||
Sbjct: 126 cgccgaggagttcgacaagc 145
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>emb|BX294027.1|NCB8G12 Neurospora crassa DNA linkage group V BAC contig B8G12
          Length = 154038

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   cgccgaggagttcgacaagc 232
             ||||||||||||||||||||
Sbjct: 42535 cgccgaggagttcgacaagc 42516
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>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011
          Length = 2505489

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 207     cggcagcgccgaggagttcg 226
               ||||||||||||||||||||
Sbjct: 1736775 cggcagcgccgaggagttcg 1736794
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>gb|AC171012.3| Gallus gallus BAC clone CH261-128I7 from chromosome ul, complete
             sequence
          Length = 231142

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 170   agcccatccccatcatcgacctca 193
             ||||||||| ||||||||||||||
Sbjct: 67835 agcccatccgcatcatcgacctca 67858
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 224     tcgacaagctgcggtccgcgttgg 247
               |||||||||||||| |||||||||
Sbjct: 1942724 tcgacaagctgcgggccgcgttgg 1942701
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>emb|AJ291316.1|OCU291316 Oryctolagus cuniculus partial mRNA for KvLQT1 voltage-gated delayed
           rectifier potassium channel (kvLQT1 gene)
          Length = 463

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 170 agcccatccccatcatcgacctca 193
           |||||||| |||||||||||||||
Sbjct: 134 agcccatctccatcatcgacctca 157
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>dbj|AP000886.3| Homo sapiens genomic DNA, chromosome 6q25.2, clone:KB1750A9
          Length = 220495

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 289    cctagctttcttgccgaggc 308
              ||||||||||||||||||||
Sbjct: 193802 cctagctttcttgccgaggc 193783
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>dbj|AP003699.1| Homo sapiens genomic DNA, chromosome 6q25, clone: KB761D4, complete
             sequence
          Length = 110025

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   cctagctttcttgccgaggc 308
             ||||||||||||||||||||
Sbjct: 21436 cctagctttcttgccgaggc 21417


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,864,776
Number of Sequences: 3902068
Number of extensions: 1864776
Number of successful extensions: 34935
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34726
Number of HSP's gapped (non-prelim): 209
length of query: 319
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 297
effective length of database: 17,147,199,772
effective search space: 5092718332284
effective search space used: 5092718332284
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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