ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet57a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK106043.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 2e-07
2dbj|AK065358.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 2e-07
3dbj|AK059056.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 2e-07
4ref|NM_191551.1| Oryza sativa (japonica cultivar-group), predic... 62 8e-07
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 58 1e-05
6dbj|AP003309.3| Oryza sativa (japonica cultivar-group) genomic D... 58 1e-05
7dbj|AP003560.2| Oryza sativa (japonica cultivar-group) genomic D... 58 1e-05
8emb|AL691513.13| Mouse DNA sequence from clone RP23-451C8 on chr... 44 0.18
9gb|AC157903.3| Mus musculus chromosome 18, clone RP23-341E18, co... 42 0.71
10gb|AC134581.5| Mus musculus BAC clone RP24-90L20 from chromosome... 42 0.71
11gb|AC145332.48| Felis catus clone rp86-207p24, complete sequence 42 0.71
12gb|AC103808.2| Homo sapiens chromosome 18, clone RP11-94B19, com... 42 0.71
13dbj|AK022038.1| Homo sapiens cDNA FLJ11976 fis, clone HEMBB1001253 42 0.71
14gb|AC102162.6| Mus musculus chromosome 18, clone RP23-419P4, com... 42 0.71
15gb|AC165090.3| Mus musculus BAC clone RP23-95H4 from chromosome ... 40 2.8
16emb|AL162417.23| Human DNA sequence from clone RP11-326L24 on ch... 40 2.8
17emb|BX640424.1| Bordetella parapertussis strain 12822, complete ... 40 2.8
18gb|AC107623.2| Homo sapiens chromosome 3 clone RP11-648C16, comp... 40 2.8
19gb|AC096970.2| Homo sapiens chromosome 3 clone RP11-321A23, comp... 40 2.8
20gb|AC024560.26| Homo sapiens 3 BAC RP11-496H1 (Roswell Park Canc... 40 2.8
21gb|AC024937.21| Homo sapiens 3 BAC RP11-480A16 (Roswell Park Can... 40 2.8
22gb|AC124944.8| Homo sapiens 3 BAC RP11-352G9 (Roswell Park Cance... 40 2.8
23gb|AC002319.1|AC002319 Homo sapiens chromosome 9q34, clone 70C11... 40 2.8
24gb|AC131680.4| Mus musculus BAC clone RP23-346F8 from 8, complet... 40 2.8
25gb|AC001643.1|AC001643 Genomic sequence from Human 9q34, complet... 40 2.8

>dbj|AK106043.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-E03, full
           insert sequence
          Length = 1617

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 91/110 (82%), Gaps = 3/110 (2%)
 Strand = Plus / Plus

                                                                       
Query: 100 ctccatggataggctcgtcgcagccggcattcttgccttcctactgatcgcgtcggtagg 159
           |||||||||||||||| ||||   | || | |||| ||||||  ||||||| || |||||
Sbjct: 71  ctccatggataggctcctcgc---ctgcctccttggcttcctgttgatcgcttcagtagg 127

                                                             
Query: 160 aagccatgcagctcgtgctccggggcaatactgggagtctgctcttccca 209
           ||||||||| |||||  |||||| |||||||||| | || ||||||||||
Sbjct: 128 aagccatgccgctcggactccggagcaatactggaaatcagctcttccca 177



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>dbj|AK065358.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013011A15, full
           insert sequence
          Length = 1618

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 91/110 (82%), Gaps = 3/110 (2%)
 Strand = Plus / Plus

                                                                       
Query: 100 ctccatggataggctcgtcgcagccggcattcttgccttcctactgatcgcgtcggtagg 159
           |||||||||||||||| ||||   | || | |||| ||||||  ||||||| || |||||
Sbjct: 72  ctccatggataggctcctcgc---ctgcctccttggcttcctgttgatcgcttcagtagg 128

                                                             
Query: 160 aagccatgcagctcgtgctccggggcaatactgggagtctgctcttccca 209
           ||||||||| |||||  |||||| |||||||||| | || ||||||||||
Sbjct: 129 aagccatgccgctcggactccggagcaatactggaaatcagctcttccca 178



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>dbj|AK059056.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-F04, full
           insert sequence
          Length = 1616

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 91/110 (82%), Gaps = 3/110 (2%)
 Strand = Plus / Plus

                                                                       
Query: 100 ctccatggataggctcgtcgcagccggcattcttgccttcctactgatcgcgtcggtagg 159
           |||||||||||||||| ||||   | || | |||| ||||||  ||||||| || |||||
Sbjct: 63  ctccatggataggctcctcgc---ctgcctccttggcttcctgttgatcgcttcagtagg 119

                                                             
Query: 160 aagccatgcagctcgtgctccggggcaatactgggagtctgctcttccca 209
           ||||||||| |||||  |||||| |||||||||| | || ||||||||||
Sbjct: 120 aagccatgccgctcggactccggagcaatactggaaatcagctcttccca 169



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>ref|NM_191551.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1290

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 67/79 (84%)
 Strand = Plus / Plus

                                                                       
Query: 131 cttgccttcctactgatcgcgtcggtaggaagccatgcagctcgtgctccggggcaatac 190
           |||| ||||||  ||||||| || |||||||||||||| |||||  |||||| |||||||
Sbjct: 25  cttggcttcctgttgatcgcttcagtaggaagccatgccgctcggactccggagcaatac 84

                              
Query: 191 tgggagtctgctcttccca 209
           ||| | || ||||||||||
Sbjct: 85  tggaaatcagctcttccca 103



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                            
Query: 145      gatcgcgtcggtaggaagccatgcagctcgtgctccggggcaatactgggagtctgctct 204
                |||||| || |||||||||||||| |||||  |||||| |||||||||| | || |||||
Sbjct: 30583798 gatcgcttcagtaggaagccatgccgctcggactccggagcaatactggaaatcagctct 30583857

                     
Query: 205      tccca 209
                |||||
Sbjct: 30583858 tccca 30583862



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>dbj|AP003309.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0036G09
          Length = 124118

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                         
Query: 145   gatcgcgtcggtaggaagccatgcagctcgtgctccggggcaatactgggagtctgctct 204
             |||||| || |||||||||||||| |||||  |||||| |||||||||| | || |||||
Sbjct: 66402 gatcgcttcagtaggaagccatgccgctcggactccggagcaatactggaaatcagctct 66461

                  
Query: 205   tccca 209
             |||||
Sbjct: 66462 tccca 66466



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>dbj|AP003560.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1060H01
          Length = 157987

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                         
Query: 145   gatcgcgtcggtaggaagccatgcagctcgtgctccggggcaatactgggagtctgctct 204
             |||||| || |||||||||||||| |||||  |||||| |||||||||| | || |||||
Sbjct: 26075 gatcgcttcagtaggaagccatgccgctcggactccggagcaatactggaaatcagctct 26134

                  
Query: 205   tccca 209
             |||||
Sbjct: 26135 tccca 26139



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>emb|AL691513.13| Mouse DNA sequence from clone RP23-451C8 on chromosome X, complete
             sequence
          Length = 121936

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 82    gctgccctctgccctgccctcc 103
             ||||||||||||||||||||||
Sbjct: 19015 gctgccctctgccctgccctcc 19036



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>gb|AC157903.3| Mus musculus chromosome 18, clone RP23-341E18, complete sequence
          Length = 198984

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 87    cctctgccctgccctccatgg 107
             |||||||||||||||||||||
Sbjct: 89203 cctctgccctgccctccatgg 89223



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>gb|AC134581.5| Mus musculus BAC clone RP24-90L20 from chromosome 8, complete sequence
          Length = 201483

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 74     tcctcattgctgccctctgcc 94
              |||||||||||||||||||||
Sbjct: 104523 tcctcattgctgccctctgcc 104503



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>gb|AC145332.48| Felis catus clone rp86-207p24, complete sequence
          Length = 165072

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 84    tgccctctgccctgccctcca 104
             |||||||||||||||||||||
Sbjct: 52191 tgccctctgccctgccctcca 52171



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>gb|AC103808.2| Homo sapiens chromosome 18, clone RP11-94B19, complete sequence
          Length = 152722

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 84    tgccctctgccctgccctcca 104
             |||||||||||||||||||||
Sbjct: 22839 tgccctctgccctgccctcca 22859



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>dbj|AK022038.1| Homo sapiens cDNA FLJ11976 fis, clone HEMBB1001253
          Length = 3174

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 81  tgctgccctctgccctgccct 101
           |||||||||||||||||||||
Sbjct: 187 tgctgccctctgccctgccct 167



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>gb|AC102162.6| Mus musculus chromosome 18, clone RP23-419P4, complete sequence
          Length = 194165

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 87    cctctgccctgccctccatgg 107
             |||||||||||||||||||||
Sbjct: 97329 cctctgccctgccctccatgg 97309



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>gb|AC165090.3| Mus musculus BAC clone RP23-95H4 from chromosome 8, complete sequence
          Length = 252334

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 181    ggggcaatactgggagtctg 200
              ||||||||||||||||||||
Sbjct: 156303 ggggcaatactgggagtctg 156322



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>emb|AL162417.23| Human DNA sequence from clone RP11-326L24 on chromosome 9q34.13-34.3
              Contains the GTF3C5 gene for general transcription factor
              IIIC polypeptide 5 63kDa, the CEL gene for carboxyl ester
              lipase (bile salt-stimulated lipase), the CELP gene for
              carboxyl ester lipase pseudogene, the RALGDS gene for ral
              guanine nucleotide dissociation stimulator, the gene for
              Forssman glycolipid synthetase (FS), three novel genes and
              six CpG islands, complete sequence
          Length = 152863

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 81     tgctgccctctgccctgccc 100
              ||||||||||||||||||||
Sbjct: 119706 tgctgccctctgccctgccc 119725



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>emb|BX640424.1| Bordetella parapertussis strain 12822, complete genome; segment 2/14
          Length = 349146

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 82     gctgccctctgccctgccctccat 105
              ||||||||| ||||||||||||||
Sbjct: 328111 gctgccctcggccctgccctccat 328088



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>gb|AC107623.2| Homo sapiens chromosome 3 clone RP11-648C16, complete sequence
          Length = 176901

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 63    tgccgtcagcttcctcattg 82
             ||||||||||||||||||||
Sbjct: 73263 tgccgtcagcttcctcattg 73244



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>gb|AC096970.2| Homo sapiens chromosome 3 clone RP11-321A23, complete sequence
          Length = 171297

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 63   tgccgtcagcttcctcattg 82
            ||||||||||||||||||||
Sbjct: 5190 tgccgtcagcttcctcattg 5209



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>gb|AC024560.26| Homo sapiens 3 BAC RP11-496H1 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 164595

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 83     ctgccctctgccctgccctc 102
              ||||||||||||||||||||
Sbjct: 124562 ctgccctctgccctgccctc 124543



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>gb|AC024937.21| Homo sapiens 3 BAC RP11-480A16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 157198

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    ctgccctctgccctgccctc 102
             ||||||||||||||||||||
Sbjct: 60287 ctgccctctgccctgccctc 60306



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 83  ctgccctctgccctgccctc 102
           ||||||||||||||||||||
Sbjct: 771 ctgccctctgccctgccctc 790



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>gb|AC124944.8| Homo sapiens 3 BAC RP11-352G9 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 121914

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 83   ctgccctctgccctgccctc 102
            ||||||||||||||||||||
Sbjct: 1275 ctgccctctgccctgccctc 1256



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>gb|AC002319.1|AC002319 Homo sapiens chromosome 9q34, clone 70C11, complete sequence
          Length = 46305

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    tgctgccctctgccctgccc 100
             ||||||||||||||||||||
Sbjct: 44281 tgctgccctctgccctgccc 44262



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>gb|AC131680.4| Mus musculus BAC clone RP23-346F8 from 8, complete sequence
          Length = 198162

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 181    ggggcaatactgggagtctg 200
              ||||||||||||||||||||
Sbjct: 160771 ggggcaatactgggagtctg 160752



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>gb|AC001643.1|AC001643 Genomic sequence from Human 9q34, complete sequence
          Length = 40203

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    tgctgccctctgccctgccc 100
             ||||||||||||||||||||
Sbjct: 20582 tgctgccctctgccctgccc 20601


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,647,626
Number of Sequences: 3902068
Number of extensions: 1647626
Number of successful extensions: 143864
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 143767
Number of HSP's gapped (non-prelim): 94
length of query: 221
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 199
effective length of database: 17,147,199,772
effective search space: 3412292754628
effective search space used: 3412292754628
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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