ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet56h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
17SB1_SOYBN (P13917) Basic 7S globulin precursor (Bg) (SBg7S) [Co... 41 7e-04
27SBG2_SOYBN (Q8RVH5) Basic 7S globulin 2 precursor (Bg) (SBg7S) ... 41 7e-04
3NEP1_NEPGR (Q766C3) Aspartic proteinase nepenthesin-1 precursor ... 30 1.2
4CARPV_CANAL (P10977) Vacuolar aspartic protease precursor (EC 3.... 29 2.7
5COA2_HUMAN (O00763) Acetyl-CoA carboxylase 2 (EC 6.4.1.2) (ACC-b... 28 6.0
6MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musa... 28 7.8
7NFKB1_HUMAN (P19838) Nuclear factor NF-kappa-B p105 subunit (DNA... 28 7.8
8NEP2_NEPGR (Q766C2) Aspartic proteinase nepenthesin-2 precursor ... 28 7.8

>7SB1_SOYBN (P13917) Basic 7S globulin precursor (Bg) (SBg7S) [Contains: Basic|
           7S globulin high-kDa subunit; Basic 7S globulin low-kDa
           subunit]
          Length = 427

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +3

Query: 147 STGQYLTGFRQRTPQVPVTAVLDLGGASLWVDCDAGYVSSSYAGVPC 287
           STG +    ++RTP + V  ++DL G  LWV+C+  Y S +Y    C
Sbjct: 43  STGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFC 89



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>7SBG2_SOYBN (Q8RVH5) Basic 7S globulin 2 precursor (Bg) (SBg7S) [Contains:|
           Basic 7S globulin 2 high-kDa subunit; Basic 7S globulin
           2 low-kDa subunit]
          Length = 433

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +3

Query: 147 STGQYLTGFRQRTPQVPVTAVLDLGGASLWVDCDAGYVSSSYAGVPC 287
           STG +    ++RTP + V  ++DL G  LWV+C+  Y S +Y    C
Sbjct: 50  STGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQHYSSKTYQAPFC 96



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>NEP1_NEPGR (Q766C3) Aspartic proteinase nepenthesin-1 precursor (EC 3.4.23.-)|
           (Nepenthesin-I)
          Length = 437

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 13/59 (22%)
 Frame = +3

Query: 153 GQYLTGFRQRTPQVPVTAVLDLGGASLWVDCDA-------------GYVSSSYAGVPCA 290
           G+YL      TP  P +A++D G   +W  C                  SSS++ +PC+
Sbjct: 93  GEYLMNLSIGTPAQPFSAIMDTGSDLIWTQCQPCTQCFNQSTPIFNPQGSSSFSTLPCS 151



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>CARPV_CANAL (P10977) Vacuolar aspartic protease precursor (EC 3.4.23.-)|
           (Aspartate protease) (ACP)
          Length = 419

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +3

Query: 156 QYLTGFRQRTPQVPVTAVLDLGGASLWV---DC 245
           QY T  +  TP  P   +LD G ++LWV   DC
Sbjct: 103 QYFTEIQIGTPGQPFKVILDTGSSNLWVPSQDC 135



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>COA2_HUMAN (O00763) Acetyl-CoA carboxylase 2 (EC 6.4.1.2) (ACC-beta)|
           [Includes: Biotin carboxylase (EC 6.3.4.14)]
          Length = 2483

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 20/57 (35%), Positives = 22/57 (38%)
 Frame = -3

Query: 290 GARHARVGRGHVPGVAVHPERGASKVEHGRHRDLGRSLPEARQVLPR*TCPSSPAAP 120
           G    R G GH       P R     +  R      SLP +RQ  PR    SS AAP
Sbjct: 55  GETPQRNGEGHTLHKDTQPGRAQPPTKAQRSGRRRNSLPPSRQKPPRNPLSSSDAAP 111



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>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)|
          Length = 328

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 113 SAVVLPVRKDMFNGAVPDGLPAANAPGP 196
           +A V   R    N A P G P AN+PGP
Sbjct: 254 AAAVAAARGSGSNPARPGGFPGANSPGP 281



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>NFKB1_HUMAN (P19838) Nuclear factor NF-kappa-B p105 subunit (DNA-binding factor|
           KBF1) (EBP-1) [Contains: Nuclear factor NF-kappa-B p50
           subunit]
          Length = 968

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 266 RGHVPGVAVHPERGASKVEHGRHRDLG 186
           RG+ PG+ VHP+    + E G  R LG
Sbjct: 163 RGYNPGLLVHPDLAYLQAEGGGDRQLG 189



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>NEP2_NEPGR (Q766C2) Aspartic proteinase nepenthesin-2 precursor (EC 3.4.23.-)|
           (Nepenthesin-II)
          Length = 438

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 153 GQYLTGFRQRTPQVPVTAVLDLGGASLWVDCD 248
           G+YL      TP    +A++D G   +W  C+
Sbjct: 94  GEYLMNVAIGTPDSSFSAIMDTGSDLIWTQCE 125


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.311    0.127    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,574,532
Number of Sequences: 219361
Number of extensions: 511206
Number of successful extensions: 1490
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1490
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
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