| Clone Name | baet56g04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY105945.1| Zea mays PCO115682 mRNA sequence Length = 947 Score = 79.8 bits (40), Expect = 2e-12 Identities = 55/60 (91%) Strand = Plus / Plus Query: 70 gcaatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctcg 129 |||||||||||||| ||| |||||||||||||||| || |||||||||| |||||||||| Sbjct: 33 gcaatggagtccaccaagctctccgcgctgctggtgctcgccatgctcgcgctctcctcg 92
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 52.0 bits (26), Expect = 5e-04 Identities = 50/58 (86%) Strand = Plus / Minus Query: 71 caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 128 ||||||||||||| |||||||| ||| |||| | || |||||||||| ||||||||| Sbjct: 32828010 caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 32827953
>dbj|AK105903.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F11, full insert sequence Length = 1255 Score = 52.0 bits (26), Expect = 5e-04 Identities = 50/58 (86%) Strand = Plus / Plus Query: 71 caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 128 ||||||||||||| |||||||| ||| |||| | || |||||||||| ||||||||| Sbjct: 59 caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 116
>dbj|AK105778.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-F10, full insert sequence Length = 1242 Score = 52.0 bits (26), Expect = 5e-04 Identities = 50/58 (86%) Strand = Plus / Plus Query: 71 caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 128 ||||||||||||| |||||||| ||| |||| | || |||||||||| ||||||||| Sbjct: 59 caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 116
>dbj|AK104623.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-H11, full insert sequence Length = 1251 Score = 52.0 bits (26), Expect = 5e-04 Identities = 50/58 (86%) Strand = Plus / Plus Query: 71 caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 128 ||||||||||||| |||||||| ||| |||| | || |||||||||| ||||||||| Sbjct: 55 caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 112
>dbj|AK071989.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094H13, full insert sequence Length = 1272 Score = 52.0 bits (26), Expect = 5e-04 Identities = 50/58 (86%) Strand = Plus / Plus Query: 71 caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 128 ||||||||||||| |||||||| ||| |||| | || |||||||||| ||||||||| Sbjct: 63 caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 120
>dbj|AK061322.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-F03, full insert sequence Length = 1257 Score = 52.0 bits (26), Expect = 5e-04 Identities = 50/58 (86%) Strand = Plus / Plus Query: 71 caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 128 ||||||||||||| |||||||| ||| |||| | || |||||||||| ||||||||| Sbjct: 61 caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 118
>emb|AL732331.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0413E07, complete sequence Length = 76546 Score = 52.0 bits (26), Expect = 5e-04 Identities = 50/58 (86%) Strand = Plus / Minus Query: 71 caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 128 ||||||||||||| |||||||| ||| |||| | || |||||||||| ||||||||| Sbjct: 23245 caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 23188
>emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G05, complete sequence Length = 142556 Score = 52.0 bits (26), Expect = 5e-04 Identities = 50/58 (86%) Strand = Plus / Minus Query: 71 caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 128 ||||||||||||| |||||||| ||| |||| | || |||||||||| ||||||||| Sbjct: 90297 caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 90240
>ref|XM_474092.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 783 Score = 48.1 bits (24), Expect = 0.007 Identities = 48/56 (85%) Strand = Plus / Plus Query: 73 atggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 128 ||||||||||| |||||||| ||| |||| | || |||||||||| ||||||||| Sbjct: 1 atggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 56
>emb|CR522871.1| Desulfotalea psychrophila LSv54, large plasmid Length = 121587 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 tgctggttctggccatgctcg 118 ||||||||||||||||||||| Sbjct: 104132 tgctggttctggccatgctcg 104112
>gb|DQ397621.1| Cenarchaeum symbiosum clone C21E11, complete sequence Length = 41700 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 gtggttgctgcaatggagtcc 81 ||||||||||||||||||||| Sbjct: 13074 gtggttgctgcaatggagtcc 13094
>gb|AC116677.11| Mus musculus chromosome 3, clone RP23-111M12, complete sequence Length = 214206 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 caggcacagcagcaccccac 25 |||||||||||||||||||| Sbjct: 104259 caggcacagcagcaccccac 104240
>gb|AC009749.9| Drosophila melanogaster clone BACR40I04, complete sequence Length = 161276 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 caggcacagcagcacccca 24 ||||||||||||||||||| Sbjct: 129104 caggcacagcagcacccca 129122
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 93 cgcgctgctggttctggcc 111 ||||||||||||||||||| Sbjct: 2510469 cgcgctgctggttctggcc 2510487
>gb|BT016125.1| Drosophila melanogaster GM16860 full insert cDNA Length = 1754 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 caggcacagcagcacccca 24 ||||||||||||||||||| Sbjct: 599 caggcacagcagcacccca 617
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 113 tgctcgtgctctcctcgcc 131 ||||||||||||||||||| Sbjct: 1413239 tgctcgtgctctcctcgcc 1413221
>gb|AE014309.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 6 of 11 of the complete sequence Length = 250029 Score = 38.2 bits (19), Expect = 7.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 2 tggccaggcacagcagcacccca 24 |||||||||||||||||| |||| Sbjct: 124955 tggccaggcacagcagcagccca 124933
>gb|AC080080.5| Homo sapiens BAC clone RP11-511H23 from 7, complete sequence Length = 154919 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 tggccaggcacagcagcac 20 ||||||||||||||||||| Sbjct: 5123 tggccaggcacagcagcac 5141
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 38.2 bits (19), Expect = 7.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 88 gtctccgcgctgctggttctggc 110 ||||||||||||||||| ||||| Sbjct: 3522586 gtctccgcgctgctggtgctggc 3522564
>emb|AL356376.9| Human DNA sequence from clone RP11-155N20 on chromosome 13, complete sequence Length = 143683 Score = 38.2 bits (19), Expect = 7.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 2 tggccaggcacagcagcacccca 24 |||||||||||||||||| |||| Sbjct: 21627 tggccaggcacagcagcagccca 21605
>gb|AC132192.3| Homo sapiens chromosome 11, clone CTD-2371O3, complete sequence Length = 101722 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 tggccaggcacagcagcac 20 ||||||||||||||||||| Sbjct: 483 tggccaggcacagcagcac 501
>gb|AC127030.5| Homo sapiens chromosome 11, clone CTD-2506H3, complete sequence Length = 85988 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 tggccaggcacagcagcac 20 ||||||||||||||||||| Sbjct: 53621 tggccaggcacagcagcac 53639
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 ggccaggcacagcagcacc 21 ||||||||||||||||||| Sbjct: 5106149 ggccaggcacagcagcacc 5106131
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 tggccaggcacagcagcac 20 ||||||||||||||||||| Sbjct: 3138248 tggccaggcacagcagcac 3138266
>ref|NM_175965.1| Drosophila melanogaster Chorion factor 2 CG11924-RC, transcript variant C (Cf2), mRNA Length = 3530 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 caggcacagcagcacccca 24 ||||||||||||||||||| Sbjct: 695 caggcacagcagcacccca 713
>ref|NM_175964.1| Drosophila melanogaster Chorion factor 2 CG11924-RB, transcript variant B (Cf2), mRNA Length = 3506 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 caggcacagcagcacccca 24 ||||||||||||||||||| Sbjct: 671 caggcacagcagcacccca 689
>ref|NM_175963.1| Drosophila melanogaster Chorion factor 2 CG11924-RD, transcript variant D (Cf2), mRNA Length = 3411 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 caggcacagcagcacccca 24 ||||||||||||||||||| Sbjct: 671 caggcacagcagcacccca 689
>ref|NM_080522.2| Drosophila melanogaster belle CG9748-RA (bel), mRNA Length = 3366 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 atggccaggcacagcagca 19 ||||||||||||||||||| Sbjct: 1317 atggccaggcacagcagca 1335
>ref|NM_078750.2| Drosophila melanogaster Chorion factor 2 CG11924-RA, transcript variant A (Cf2), mRNA Length = 3590 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 caggcacagcagcacccca 24 ||||||||||||||||||| Sbjct: 671 caggcacagcagcacccca 689
>gb|AY089613.1| Drosophila melanogaster RE28061 full insert cDNA Length = 3057 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 atggccaggcacagcagca 19 ||||||||||||||||||| Sbjct: 1009 atggccaggcacagcagca 1027
>gb|AC009512.6| Drosophila melanogaster, chromosome 3R, region 85B-85B, BAC clone BACR01F13, complete sequence Length = 167467 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 atggccaggcacagcagca 19 ||||||||||||||||||| Sbjct: 132581 atggccaggcacagcagca 132599
>gb|AC007571.6| Drosophila melanogaster, chromosome 3R, region 85A1-85A10, BAC clone BACR48A14, complete sequence Length = 188337 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 atggccaggcacagcagca 19 ||||||||||||||||||| Sbjct: 13696 atggccaggcacagcagca 13714
>gb|AC009845.7|AC009845 Drosophila melanogaster, chromosome 2L, region 25A-25B, BAC clone BACR04C19, complete sequence Length = 183766 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 caggcacagcagcacccca 24 ||||||||||||||||||| Sbjct: 580 caggcacagcagcacccca 598
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 ggccaggcacagcagcacc 21 ||||||||||||||||||| Sbjct: 6972909 ggccaggcacagcagcacc 6972927
>gb|AE004901.1| Pseudomonas aeruginosa PAO1, section 462 of 529 of the complete genome Length = 12399 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 ggccaggcacagcagcacc 21 ||||||||||||||||||| Sbjct: 11433 ggccaggcacagcagcacc 11451
>gb|AE003679.2| Drosophila melanogaster chromosome 3R, section 17 of 118 of the complete sequence Length = 216994 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 atggccaggcacagcagca 19 ||||||||||||||||||| Sbjct: 213834 atggccaggcacagcagca 213816
>gb|AE003575.5| Drosophila melanogaster chromosome 2L, section 16 of 83 of the complete sequence Length = 330399 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 6 caggcacagcagcacccca 24 ||||||||||||||||||| Sbjct: 270962 caggcacagcagcacccca 270944
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 tggccaggcacagcagcac 20 ||||||||||||||||||| Sbjct: 3145556 tggccaggcacagcagcac 3145574
>emb|AL928924.12| Mouse DNA sequence from clone RP23-307E15 on chromosome 2, complete sequence Length = 195936 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 105 tctggccatgctcgtgctc 123 ||||||||||||||||||| Sbjct: 11496 tctggccatgctcgtgctc 11478
>gb|M97196.1|DROBPIS Drosophila melanogaster DNA-binding protein isoform I, complete cds, and isoforms II and III, 3' end Length = 3824 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 caggcacagcagcacccca 24 ||||||||||||||||||| Sbjct: 903 caggcacagcagcacccca 921 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 939,421 Number of Sequences: 3902068 Number of extensions: 939421 Number of successful extensions: 73538 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73172 Number of HSP's gapped (non-prelim): 366 length of query: 150 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 129 effective length of database: 17,151,101,840 effective search space: 2212492137360 effective search space used: 2212492137360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)