ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet56g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4,... 70 2e-09
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 70 2e-09
3dbj|AK106989.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 2e-09
4dbj|AK067501.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 2e-09
5emb|AL732332.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 70 2e-09
6emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4,... 70 2e-09
7ref|XM_474080.1| Oryza sativa (japonica cultivar-group), predic... 68 7e-09
8gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chr... 38 6.1
9gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chr... 38 6.1
10ref|XM_571098.1| Cryptococcus neoformans var. neoformans JEC21 h... 38 6.1

>emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063C18,
              complete sequence
          Length = 150416

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                         
Query: 88     gatgtcggggcagacgcagagactgaacgtggtgccgacggtg 130
              ||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 126205 gatgtcggggcagacgcagcgcctgaacgtggtgccgacggtg 126247



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                           
Query: 88       gatgtcggggcagacgcagagactgaacgtggtgccgacggtg 130
                ||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 32766772 gatgtcggggcagacgcagcgcctgaacgtggtgccgacggtg 32766814



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>dbj|AK106989.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-A07, full
           insert sequence
          Length = 1144

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                      
Query: 88  gatgtcggggcagacgcagagactgaacgtggtgccgacggtg 130
           ||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 61  gatgtcggggcagacgcagcgcctgaacgtggtgccgacggtg 103



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>dbj|AK067501.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110H12, full
           insert sequence
          Length = 1438

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                      
Query: 88  gatgtcggggcagacgcagagactgaacgtggtgccgacggtg 130
           ||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 226 gatgtcggggcagacgcagcgcctgaacgtggtgccgacggtg 268



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>emb|AL732332.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F03, complete
             sequence
          Length = 91539

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                        
Query: 88    gatgtcggggcagacgcagagactgaacgtggtgccgacggtg 130
             ||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 37018 gatgtcggggcagacgcagcgcctgaacgtggtgccgacggtg 37060



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>emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G05,
             complete sequence
          Length = 142556

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                        
Query: 88    gatgtcggggcagacgcagagactgaacgtggtgccgacggtg 130
             ||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 29062 gatgtcggggcagacgcagcgcctgaacgtggtgccgacggtg 29104



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>ref|XM_474080.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 810

 Score = 67.9 bits (34), Expect = 7e-09
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                     
Query: 89  atgtcggggcagacgcagagactgaacgtggtgccgacggtg 130
           |||||||||||||||||| | |||||||||||||||||||||
Sbjct: 1   atgtcggggcagacgcagcgcctgaacgtggtgccgacggtg 42



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>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete
              sequence
          Length = 1438950

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 105    agagactgaacgtggtgcc 123
              |||||||||||||||||||
Sbjct: 129550 agagactgaacgtggtgcc 129532



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>gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete
             sequence
          Length = 1507550

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 105   agagactgaacgtggtgcc 123
             |||||||||||||||||||
Sbjct: 79523 agagactgaacgtggtgcc 79505



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>ref|XM_571098.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CNE00340) partial mRNA
          Length = 1809

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 105 agagactgaacgtggtgcc 123
           |||||||||||||||||||
Sbjct: 824 agagactgaacgtggtgcc 842


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 304,388
Number of Sequences: 3902068
Number of extensions: 304388
Number of successful extensions: 17136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17112
Number of HSP's gapped (non-prelim): 24
length of query: 130
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 109
effective length of database: 17,151,101,840
effective search space: 1869470100560
effective search space used: 1869470100560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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