>POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein LINE-1 (Long interspersed|
            element-1) (L1) [Includes: Reverse transcriptase (EC
            2.7.7.49); Endonuclease]
          Length = 1281

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 96   CSNRSFVRMPQLHTSLHFHLTPI*TARL 13
            CS    +R  Q+ T+L FHLTP+  A++
Sbjct: 1102 CSTSLIIREMQIKTTLRFHLTPVRMAKI 1129


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,450,164
Number of Sequences: 219361
Number of extensions: 215015
Number of successful extensions: 470
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 80,573,946
effective HSP length: 21
effective length of database: 75,967,365
effective search space used: 1823216760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)