>PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 325

 Score =  120 bits (302), Expect = 7e-28
 Identities = 62/65 (95%), Positives = 63/65 (96%)
 Frame = +3

Query: 3   SSHVARLFGVDAAARITCSLQSDIREVASKCADAAKMAGFALATSALLVSGASAEGAPKR 182
           SSHVAR FGVDA ARITCSLQSDIREVASKCADAAKMAGFALATSALLVSGA+AEGAPKR
Sbjct: 26  SSHVARAFGVDAGARITCSLQSDIREVASKCADAAKMAGFALATSALLVSGATAEGAPKR 85

Query: 183 LTFDE 197
           LTFDE
Sbjct: 86  LTFDE 90

>PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score = 95.9 bits (237), Expect = 3e-20
 Identities = 45/67 (67%), Positives = 57/67 (85%), Gaps = 2/67 (2%)
 Frame = +3

Query: 3   SSHVARLFGVD--AAARITCSLQSDIREVASKCADAAKMAGFALATSALLVSGASAEGAP 176
           +SH+++ FG D   A R+TCS+ SD+R++A KC DAAK+AGFALATSAL++SGASAEG P
Sbjct: 27  NSHLSKAFGFDNSTAGRLTCSINSDLRDIAQKCTDAAKLAGFALATSALVISGASAEGVP 86

Query: 177 KRLTFDE 197
           KRLTFDE
Sbjct: 87  KRLTFDE 93

>PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chloroplast|
           precursor (OEE1) (33 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 33 kDa subunit) (33 kDa
           thylakoid membrane protein)
          Length = 331

 Score = 90.5 bits (223), Expect = 1e-18
 Identities = 44/63 (69%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
 Frame = +3

Query: 12  VARLFGVDAA-ARITCSLQSDIREVASKCADAAKMAGFALATSALLVSGASAEGAPKRLT 188
           V + FG+D++ AR+TCSL SD+++ A KC+DAAK+AGFALATSAL+VSGA AEGAPKRLT
Sbjct: 33  VGKSFGLDSSQARLTCSLHSDLKDFAGKCSDAAKIAGFALATSALVVSGAGAEGAPKRLT 92

Query: 189 FDE 197
           +DE
Sbjct: 93  YDE 95

>PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 333

 Score = 89.7 bits (221), Expect = 2e-18
 Identities = 43/66 (65%), Positives = 58/66 (87%), Gaps = 1/66 (1%)
 Frame = +3

Query: 3   SSHVARLFGVD-AAARITCSLQSDIREVASKCADAAKMAGFALATSALLVSGASAEGAPK 179
           S  V++ FG++ +A+R++CSLQ+D+++ A KC DAAK+AGFALATSAL+VSGA+AEG PK
Sbjct: 31  SQSVSKAFGLEPSASRLSCSLQTDLKDFAQKCTDAAKIAGFALATSALVVSGANAEGVPK 90

Query: 180 RLTFDE 197
           RLTFDE
Sbjct: 91  RLTFDE 96

>PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score = 89.7 bits (221), Expect = 2e-18
 Identities = 44/63 (69%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
 Frame = +3

Query: 12  VARLFGVDA-AARITCSLQSDIREVASKCADAAKMAGFALATSALLVSGASAEGAPKRLT 188
           V++ FG++   A++TCSLQSD +E+A KC +A+K+AGFALATSAL+VSGASAEGAPKRLT
Sbjct: 30  VSKAFGLEHYGAKVTCSLQSDFKELAHKCVEASKIAGFALATSALVVSGASAEGAPKRLT 89

Query: 189 FDE 197
           FDE
Sbjct: 90  FDE 92

>PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score = 89.4 bits (220), Expect = 2e-18
 Identities = 43/63 (68%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
 Frame = +3

Query: 12  VARLFGVD-AAARITCSLQSDIREVASKCADAAKMAGFALATSALLVSGASAEGAPKRLT 188
           V++ FGV+  + R+TCSLQ++I+E+A KC DAAK+AGFALATSAL+VSGA+AEG PKRLT
Sbjct: 31  VSKAFGVEQGSGRLTCSLQTEIKELAQKCTDAAKIAGFALATSALVVSGANAEGVPKRLT 90

Query: 189 FDE 197
           +DE
Sbjct: 91  YDE 93

>PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 332

 Score = 88.6 bits (218), Expect = 4e-18
 Identities = 44/63 (69%), Positives = 57/63 (90%), Gaps = 1/63 (1%)
 Frame = +3

Query: 12  VARLFGVD-AAARITCSLQSDIREVASKCADAAKMAGFALATSALLVSGASAEGAPKRLT 188
           V++ FGV+ AAAR+TCSLQ++++++A K  DAAK+AGFALATSAL+VSGA+AEG PKRLT
Sbjct: 34  VSKAFGVEPAAARLTCSLQTELKDLAQKFTDAAKVAGFALATSALVVSGANAEGVPKRLT 93

Query: 189 FDE 197
           FDE
Sbjct: 94  FDE 96

>PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chloroplast|
           precursor (OEE1) (33 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 33 kDa subunit) (33 kDa
           thylakoid membrane protein)
          Length = 332

 Score = 87.0 bits (214), Expect = 1e-17
 Identities = 42/63 (66%), Positives = 54/63 (85%), Gaps = 1/63 (1%)
 Frame = +3

Query: 12  VARLFGVD-AAARITCSLQSDIREVASKCADAAKMAGFALATSALLVSGASAEGAPKRLT 188
           V + FG++ ++AR+TCS QSD ++   KC+DA K+AGFALATSAL+VSGASAEGAPKRLT
Sbjct: 34  VGKSFGLETSSARLTCSFQSDFKDFTGKCSDAVKIAGFALATSALVVSGASAEGAPKRLT 93

Query: 189 FDE 197
           +DE
Sbjct: 94  YDE 96

>PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 332

 Score = 75.9 bits (185), Expect = 3e-14
 Identities = 39/68 (57%), Positives = 55/68 (80%), Gaps = 3/68 (4%)
 Frame = +3

Query: 3   SSHVARLFGVDAAA---RITCSLQSDIREVASKCADAAKMAGFALATSALLVSGASAEGA 173
           + +V + FGV++A+   R++ SLQSD++E+A+KC DA K+AG ALATSAL+ SGA+AEG 
Sbjct: 28  TQNVCKAFGVESASSGGRLSLSLQSDLKELANKCVDATKLAGLALATSALIASGANAEGG 87

Query: 174 PKRLTFDE 197
            KRLT+DE
Sbjct: 88  -KRLTYDE 94

>LRFN4_HUMAN (Q6PJG9) Leucine-rich repeat and fibronectin type-III|
           domain-containing protein 4 precursor
          Length = 635

 Score = 33.1 bits (74), Expect = 0.21
 Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -1

Query: 182 PLGRPLRTCARDEEGRGCEGEAGHLGGVGALACDLPDVGLQGA--RDPGGSVD 30
           P  RP R+C+ D    GC G A  LGG  A        GL GA  R  GGS +
Sbjct: 576 PPPRPQRSCSLDLGDAGCYGYARRLGGAWARRSHSVHGGLLGAGCRGVGGSAE 628

>GRIN1_HUMAN (Q7Z2K8) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)|
          Length = 1008

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 1   GRRTSPVCSASTLPPGSRAPCNPTSGRS-QASAPTPPR 111
           G   SP   A+  PPG R   N T   S +ASAP PPR
Sbjct: 772 GAERSPCPEAAAPPPGPRTRDNFTKAPSWEASAPPPPR 809

>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 1   GRRTSPVCSASTLPPGSRAPCNPTSGRSQASAPTPPR 111
           GR++ PV      PP +R P +P+  R QA AP   R
Sbjct: 530 GRQSRPVAGGPGAPPAARPPASPSPQR-QAGAPQATR 565

>LRFN4_MOUSE (Q80XU8) Leucine-rich repeat and fibronectin type-III|
           domain-containing protein 4 precursor
          Length = 636

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -1

Query: 182 PLGRPLRTCARD-EEGRGCEGEAGHLGGVGALACDLPDVGLQGA--RDPGGSVD 30
           P  RP R+C+ D  +  GC G A  LGG  A        GL GA  R  GGS +
Sbjct: 576 PPPRPQRSCSLDLGDTGGCYGYARRLGGAWARRSHSVHGGLLGAGCRGVGGSAE 629

>FOXC1_HUMAN (Q12948) Forkhead box protein C1 (Forkhead-related protein FKHL7)|
           (Forkhead-related transcription factor 3) (FREAC-3)
          Length = 553

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -1

Query: 140 GRGCEGEAGHLGGVGALACDLPDVGLQGARDPGGSVDAEQTG 15
           G G  G AG  GG G   C+L  + L  A + GG +     G
Sbjct: 377 GGGGAGAAGGAGGAGTYHCNLQAMSLYAAGERGGHLQGAPGG 418

>TTP_HUMAN (P26651) Tristetraproline (TTP) (Zinc finger protein 36 homolog)|
           (Zfp-36) (TIS11A protein) (TIS11) (Growth
           factor-inducible nuclear protein NUP475) (G0/G1 switch
           regulatory protein 24)
          Length = 326

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +1

Query: 1   GRRTSPVCSASTLPPGSRAPCNPTSGRSQASAPTPP 108
           GRRTSP       PPG   P   +S  S +S+P PP
Sbjct: 193 GRRTSPP------PPGLAGPSLSSSSFSPSSSPPPP 222

>SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)|
          Length = 705

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 10/47 (21%)
 Frame = +1

Query: 1   GRRTSPVCSASTLPPGSRAPCNPTSGR----------SQASAPTPPR 111
           GR++ PV      PP +R P +P+  R          +  S P PP+
Sbjct: 530 GRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPK 576

>ZDH18_HUMAN (Q9NUE0) Palmitoyltransferase ZDHHC18 (EC 2.3.1.-) (Zinc finger|
           DHHC domain-containing protein 18) (DHHC-18)
          Length = 388

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
 Frame = +1

Query: 4   RRTSPVCSASTLPPGSRAP---CNPTSGRSQA--SAPTPPRW 114
           ++ SP  +     PG+R P    +PT G   A  +AP PPRW
Sbjct: 7   QQISPGAAPLPASPGARRPGPAASPTPGPGPAPPAAPAPPRW 48

>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)|
          Length = 704

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 10/47 (21%)
 Frame = +1

Query: 1   GRRTSPVCSASTLPPGSRAPCNPTSGR----------SQASAPTPPR 111
           GR++ PV      PP +R P +P+  R          +  S P PP+
Sbjct: 528 GRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQASISGPAPPK 574

>ENL2_ARATH (Q9T076) Early nodulin-like protein 2 precursor (Phytocyanin-like|
           protein)
          Length = 349

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 7   RTSPVCSASTLPPGSRAPCNPTSGRSQASAPTPPR 111
           ++S   S +T PPGS AP + +      S P PP+
Sbjct: 188 KSSSAVSPATSPPGSMAPKSGSPVSPTTSPPAPPK 222

>OPN4_HUMAN (Q9UHM6) Melanopsin (Opsin-4)|
          Length = 478

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 40  PPGSRAPCNPTSGRSQASAPTPPRW 114
           P G R P +PT   S  + P PP W
Sbjct: 4   PSGPRVPPSPTQEPSCMATPAPPSW 28

>NIR_BETVE (P38500) Ferredoxin--nitrite reductase, chloroplast precursor (EC|
           1.7.7.1)
          Length = 583

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -1

Query: 155 ARDEEGRGCEGEAGHLGG 102
           ARDE G+ CEG A  LGG
Sbjct: 521 ARDENGKPCEGAAVFLGG 538

>SYN1_BOVIN (P17599) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 1   GRRTSPVCSASTLPPGSRAPCNPTSGRSQASAPTPPR 111
           GR++ PV      PP +R P +P+  R QA  P   R
Sbjct: 530 GRQSRPVAGGPGAPPATRPPASPSPQR-QAGPPQATR 565

>SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)|
          Length = 415

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 1   GRRTSPVCSASTLPPGSRAPCNPTSGRSQASAPTPPR 111
           GR++ PV      PP +R P +P+  R QA  P   R
Sbjct: 258 GRQSRPVAGGPGAPPAARPPASPSPQR-QAGPPQATR 293

>CLIC6_RABIT (Q9N2G5) Chloride intracellular channel 6 (Parchorin)|
          Length = 637

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 152 RDEEGRGCEGEAGHLGGVGALACDLP--DVGLQGARDPGGSVDAEQTGD 12
           R E  R  EG+A      GA    +P   V  +G+ D GGSVDA  + D
Sbjct: 129 RGEAAREAEGQAAAPAAPGAQEEAVPGDSVDAEGSIDAGGSVDAAGSVD 177

>PG34_MYCTU (Q50594) Hypothetical PE-PGRS family protein PE_PGRS34|
          Length = 515

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 17/45 (37%), Positives = 18/45 (40%)
 Frame = -1

Query: 140 GRGCEGEAGHLGGVGALACDLPDVGLQGARDPGGSVDAEQTGDVR 6
           G G  G AG  GG G     L   G  G   P G+ D    GD R
Sbjct: 228 GLGKAGFAGGAGGTGGTGGLLYGNGGNGGNVPSGAADGGAGGDAR 272

>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)|
          Length = 283

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 10  TSPVCSASTLPPGSRAPCNPTSGRSQASAPTPP 108
           T PV + +  PP ++ P +  S +   S PTPP
Sbjct: 164 TPPVYTPNPKPPVTKPPTHTPSPKPPTSKPTPP 196



 Score = 27.7 bits (60), Expect = 8.6
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 10  TSPVCSASTLPPGSRAPCNPTSGRSQASAPTPP 108
           T P  + S  PP ++ P  PT        PTPP
Sbjct: 113 TPPTYTPSPKPPATKPPTYPTPKPPATKPPTPP 145

>NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Silencing|
           mediator of retinoic acid and thyroid hormone receptor)
           (SMRT) (SMRTe) (Thyroid-,
           retinoic-acid-receptor-associated corepressor) (T3
           receptor-associating factor) (TRAC) (CTG repeat p
          Length = 2517

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 8/44 (18%)
 Frame = +1

Query: 1   GRRTSPVCSASTLPPG--------SRAPCNPTSGRSQASAPTPP 108
           G +      A   PPG        SRAP  PT       APTPP
Sbjct: 766 GPKPPATLGADGPPPGPPTPPRRTSRAPIEPTPASEATGAPTPP 809


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,768,688
Number of Sequences: 219361
Number of extensions: 368550
Number of successful extensions: 2150
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2146
length of database: 80,573,946
effective HSP length: 41
effective length of database: 71,580,145
effective search space used: 1717923480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)