ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet56d07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 82 5e-13
2dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic D... 82 5e-13
3emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chro... 50 0.002
4ref|XM_525528.1| PREDICTED: Pan troglodytes similar to positive ... 40 1.7
5gb|U80745.1|HSU80745 Homo sapiens CTG7a mRNA, partial cds 40 1.7
6ref|NM_015889.3| Homo sapiens PC2 (positive cofactor 2, multipro... 40 1.7
7ref|NM_001003891.1| Homo sapiens PC2 (positive cofactor 2, multi... 40 1.7
8emb|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4,... 40 1.7
9gb|BC013985.2| Homo sapiens PC2 (positive cofactor 2, multiprote... 40 1.7
10gb|BC003078.1| Homo sapiens PC2 (positive cofactor 2, multiprote... 40 1.7
11gb|BC017110.1| Homo sapiens PC2 (positive cofactor 2, multiprote... 40 1.7
12emb|CR860021.1| Pongo pygmaeus mRNA; cDNA DKFZp459O0325 (from cl... 40 1.7
13dbj|AK126208.1| Homo sapiens cDNA FLJ44220 fis, clone THYMU30048... 40 1.7
14emb|CR611888.1| full-length cDNA clone CS0DI081YK14 of Placenta ... 40 1.7
15gb|AC128639.13| Papio anubis clone rp41-2d18, complete sequence 40 1.7
16gb|AY895166.1| Gallus gallus BAC bW108010 chemokine-like ligand ... 40 1.7
17gb|AF328769.1|AF328769 Homo sapiens PC2-glutamine-rich-associate... 40 1.7
18gb|AC004033.3| Homo sapiens Chromosome 22q11.2 PAC Clone p_m11 I... 40 1.7
19gb|AC006946.20| Homo sapiens Chromosome 22q11 Pac Clone p109l3 i... 40 1.7
20gb|AC007050.25| Homo sapiens chromosome 22 clone bac32 map 22q11... 40 1.7
21dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.7
22gb|AF056191.1|AF056191 Homo sapiens TPA inducible protein mRNA, ... 40 1.7
23emb|AJ514427.1|ECA514427 Equus caballus mRNA for aquaporin 5 (aq... 40 1.7
24emb|CR456537.1| Homo sapiens PCQAP full length open reading fram... 40 1.7
25gb|AY610211.1| Sus scrofa clone Clu_9762.scr.msk.p1.Contig1, mRN... 40 1.7
26dbj|AK090465.1| Homo sapiens mRNA for FLJ00386 protein 40 1.7
27ref|XM_518941.1| PREDICTED: Pan troglodytes similar to KIAA1950 ... 38 6.5
28gb|DQ224364.1| Crocus vernus 18S ribosomal RNA gene, partial seq... 38 6.5
29gb|DQ224363.1| Crocus vernus 18S ribosomal RNA gene, partial seq... 38 6.5
30ref|XM_424642.1| PREDICTED: Gallus gallus similar to Protocadher... 38 6.5
31ref|XM_428857.1| PREDICTED: Gallus gallus similar to Protocadher... 38 6.5
32ref|XM_424315.1| PREDICTED: Gallus gallus similar to Protocadher... 38 6.5
33ref|XM_424332.1| PREDICTED: Gallus gallus similar to Protocadher... 38 6.5
34ref|XM_423902.1| PREDICTED: Gallus gallus similar to Protocadher... 38 6.5
35ref|XM_423725.1| PREDICTED: Gallus gallus similar to Protocadher... 38 6.5
36ref|XM_427149.1| PREDICTED: Gallus gallus similar to Protocadher... 38 6.5
37ref|XM_423165.1| PREDICTED: Gallus gallus similar to Protocadher... 38 6.5
38ref|XM_427107.1| PREDICTED: Gallus gallus similar to Protocadher... 38 6.5
39ref|XM_423014.1| PREDICTED: Gallus gallus similar to Protocadher... 38 6.5
40gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 38 6.5
41ref|XM_323802.1| Neurospora crassa OR74A hypothetical protein (N... 38 6.5
42ref|XM_950815.1| Neurospora crassa OR74A hypothetical protein (N... 38 6.5
43ref|XM_959560.1| Neurospora crassa OR74A related to n-alkane-ind... 38 6.5
44ref|XM_329220.1| Neurospora crassa OR74A related to n-alkane-ind... 38 6.5
45gb|AC006028.3| Homo sapiens BAC clone GS1-165O14 from 7, complet... 38 6.5
46ref|XM_975741.1| PREDICTED: Mus musculus hypothetical protein LO... 38 6.5
47emb|AJ635357.1| Homo sapiens mRNA for metalloproteinase-like pro... 38 6.5
48gb|AC183798.2| Pan troglodytes BAC clone CH251-424F21 from chrom... 38 6.5
49emb|BX908808.1| Neurospora crassa DNA linkage group IV Cosmid co... 38 6.5
50emb|AL442164.1|NCB2J23 Neurospora crassa DNA linkage group I BAC... 38 6.5
51gb|AC010063.7| Drosophila melanogaster 3L BAC RP98-16A3 (Roswell... 38 6.5
52gb|AC091222.3| Drosophila melanogaster 3L BAC RP98-11G24 (Roswel... 38 6.5
53dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 38 6.5
54dbj|AK092107.1| Homo sapiens cDNA FLJ34788 fis, clone NT2NE2004787 38 6.5
55gb|AC010198.8| Homo sapiens 12p11-37.2-54.4 BAC RP11-77I22 (Rosw... 38 6.5
56ref|NM_133463.1| Homo sapiens archaemetzincin-1 (AMZ1), mRNA 38 6.5
57gb|AC151895.4| Mus musculus BAC clone RP24-323A22 from chromosom... 38 6.5
58gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 38 6.5
59dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.5
60gb|AC123530.4| Mus musculus BAC clone RP24-194D2 from chromosome... 38 6.5
61gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 38 6.5
62gb|AE005111.1| Halobacterium sp. NRC-1 section 142 of 170 of the... 38 6.5
63gb|AC147872.3| Monodelphis domestica clone VMRC6-555H19, complet... 38 6.5
64emb|Z56184.1|HS92F9F H.sapiens CpG island DNA genomic Mse1 fragm... 38 6.5
65gb|AE003473.3| Drosophila melanogaster chromosome 3L, section 7 ... 38 6.5
66gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 38 6.5
67gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 6.5
68emb|AL772425.7|CNS08CA3 Oryza sativa chromosome 12, . BAC OJ1396... 38 6.5
69emb|AL662809.14| Mouse DNA sequence from clone RP23-441I8 on chr... 38 6.5
70gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold 38 6.5
71gb|L28827.1|MUSHDH Mouse Huntington's Disease gene homologue (Hd... 38 6.5
72emb|AL611963.24| Mouse DNA sequence from clone RP23-79J18 on chr... 38 6.5
73dbj|AB075830.1| Homo sapiens mRNA for KIAA1950 protein 38 6.5
74dbj|AB071600.1| Oryza sativa (japonica cultivar-group) gene for ... 38 6.5
75dbj|AB064519.1| Oryza sativa (japonica cultivar-group) OsRS2 mRN... 38 6.5 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 81.8 bits (41), Expect = 5e-13
 Identities = 83/97 (85%)
 Strand = Plus / Plus

                                                                            
Query: 40       aaatggcgctcctcccgctgctcctcgcggccctcatcgtctcctgctccgctcagcagc 99
                |||||||||||||||||||| ||||||||  |||| ||| ||||  | |||| |||||||
Sbjct: 26355420 aaatggcgctcctcccgctggtcctcgcgctcctcgtcgcctccgccgccgcgcagcagc 26355479

                                                     
Query: 100      caccgatgcagccgccgccaacacccaacgcgccgcc 136
                |||||| |||| |||||||  | ||||||||||||||
Sbjct: 26355480 caccgacgcagtcgccgccggctcccaacgcgccgcc 26355516
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>dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:P0491E01
          Length = 136150

 Score = 81.8 bits (41), Expect = 5e-13
 Identities = 83/97 (85%)
 Strand = Plus / Plus

                                                                         
Query: 40    aaatggcgctcctcccgctgctcctcgcggccctcatcgtctcctgctccgctcagcagc 99
             |||||||||||||||||||| ||||||||  |||| ||| ||||  | |||| |||||||
Sbjct: 87772 aaatggcgctcctcccgctggtcctcgcgctcctcgtcgcctccgccgccgcgcagcagc 87831

                                                  
Query: 100   caccgatgcagccgccgccaacacccaacgcgccgcc 136
             |||||| |||| |||||||  | ||||||||||||||
Sbjct: 87832 caccgacgcagtcgccgccggctcccaacgcgccgcc 87868
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>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2
          Length = 339972

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 40    aaatggcgctcctcccgctgctcctcgcg 68
             |||||||||||||||||||| ||||||||
Sbjct: 78564 aaatggcgctcctcccgctggtcctcgcg 78592
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>ref|XM_525528.1| PREDICTED: Pan troglodytes similar to positive cofactor 2,
            glutamine/Q-rich-associated protein isoform b;
            PC2-glutamine-rich-associated protein; TPA inducible
            gene-1; trinucleotide repeat containing 7; TPA inducible
            protein; activator-recruited cofactor, 105-kD; CTG repeat
            p... (LOC470144), mRNA
          Length = 4350

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 92   tcagcagccaccgatgcagc 111
            ||||||||||||||||||||
Sbjct: 2202 tcagcagccaccgatgcagc 2221
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>gb|U80745.1|HSU80745 Homo sapiens CTG7a mRNA, partial cds
          Length = 1048

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 92  tcagcagccaccgatgcagc 111
           ||||||||||||||||||||
Sbjct: 258 tcagcagccaccgatgcagc 277
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>ref|NM_015889.3| Homo sapiens PC2 (positive cofactor 2, multiprotein complex)
           glutamine/Q-rich-associated protein (PCQAP), transcript
           variant 2, mRNA
          Length = 3264

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 92  tcagcagccaccgatgcagc 111
           ||||||||||||||||||||
Sbjct: 890 tcagcagccaccgatgcagc 909
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>ref|NM_001003891.1| Homo sapiens PC2 (positive cofactor 2, multiprotein complex)
           glutamine/Q-rich-associated protein (PCQAP), transcript
           variant 1, mRNA
          Length = 3384

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 92  tcagcagccaccgatgcagc 111
           ||||||||||||||||||||
Sbjct: 890 tcagcagccaccgatgcagc 909
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>emb|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055C08,
              complete sequence
          Length = 145670

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     ctcctcccgctgctcctcgc 67
              ||||||||||||||||||||
Sbjct: 106847 ctcctcccgctgctcctcgc 106828
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>gb|BC013985.2| Homo sapiens PC2 (positive cofactor 2, multiprotein complex)
           glutamine/Q-rich-associated protein, transcript variant
           2, mRNA (cDNA clone MGC:20267 IMAGE:3506327), complete
           cds
          Length = 3227

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 92  tcagcagccaccgatgcagc 111
           ||||||||||||||||||||
Sbjct: 850 tcagcagccaccgatgcagc 869
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>gb|BC003078.1| Homo sapiens PC2 (positive cofactor 2, multiprotein complex)
           glutamine/Q-rich-associated protein, mRNA (cDNA clone
           IMAGE:3504608), partial cds
          Length = 3240

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 92  tcagcagccaccgatgcagc 111
           ||||||||||||||||||||
Sbjct: 868 tcagcagccaccgatgcagc 887
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>gb|BC017110.1| Homo sapiens PC2 (positive cofactor 2, multiprotein complex)
           glutamine/Q-rich-associated protein, mRNA (cDNA clone
           IMAGE:3604453)
          Length = 3067

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 92  tcagcagccaccgatgcagc 111
           ||||||||||||||||||||
Sbjct: 575 tcagcagccaccgatgcagc 594
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>emb|CR860021.1| Pongo pygmaeus mRNA; cDNA DKFZp459O0325 (from clone DKFZp459O0325)
          Length = 3256

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 92  tcagcagccaccgatgcagc 111
           ||||||||||||||||||||
Sbjct: 887 tcagcagccaccgatgcagc 906
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>dbj|AK126208.1| Homo sapiens cDNA FLJ44220 fis, clone THYMU3004866, moderately
            similar to Homo sapiens PC2 (positive cofactor 2,
            multiprotein complex) glutamine/Q-rich-associated protein
            (PCQAP)
          Length = 3622

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 92   tcagcagccaccgatgcagc 111
            ||||||||||||||||||||
Sbjct: 1272 tcagcagccaccgatgcagc 1291
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>emb|CR611888.1| full-length cDNA clone CS0DI081YK14 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 2700

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 92  tcagcagccaccgatgcagc 111
           ||||||||||||||||||||
Sbjct: 362 tcagcagccaccgatgcagc 381
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>gb|AC128639.13| Papio anubis clone rp41-2d18, complete sequence
          Length = 173331

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    tcagcagccaccgatgcagc 111
             ||||||||||||||||||||
Sbjct: 62736 tcagcagccaccgatgcagc 62717
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>gb|AY895166.1| Gallus gallus BAC bW108010 chemokine-like ligand 1, SCYA4, chemokine
             K203, and chemokine ah294 genes, complete cds
          Length = 112034

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 50    cctcccgctgctcctcgcggccct 73
             |||||||||||||||||| |||||
Sbjct: 61861 cctcccgctgctcctcgcagccct 61838
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>gb|AF328769.1|AF328769 Homo sapiens PC2-glutamine-rich-associated protein (PCQAP) mRNA,
           complete cds
          Length = 3170

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 92  tcagcagccaccgatgcagc 111
           ||||||||||||||||||||
Sbjct: 804 tcagcagccaccgatgcagc 823
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>gb|AC004033.3| Homo sapiens Chromosome 22q11.2 PAC Clone p_m11 In BCRL2-GGT Region,
              complete sequence
          Length = 145356

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 92     tcagcagccaccgatgcagc 111
              ||||||||||||||||||||
Sbjct: 103902 tcagcagccaccgatgcagc 103921
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>gb|AC006946.20| Homo sapiens Chromosome 22q11 Pac Clone p109l3 in CES region, complete
              sequence
          Length = 193159

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     gcgctcctcccgctgctcct 64
              ||||||||||||||||||||
Sbjct: 104289 gcgctcctcccgctgctcct 104270
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>gb|AC007050.25| Homo sapiens chromosome 22 clone bac32 map 22q11, complete sequence
          Length = 163908

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    tcagcagccaccgatgcagc 111
             ||||||||||||||||||||
Sbjct: 14680 tcagcagccaccgatgcagc 14699
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 48       ctcctcccgctgctcctcgc 67
                ||||||||||||||||||||
Sbjct: 19325015 ctcctcccgctgctcctcgc 19324996
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>gb|AF056191.1|AF056191 Homo sapiens TPA inducible protein mRNA, complete cds
          Length = 3334

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 92  tcagcagccaccgatgcagc 111
           ||||||||||||||||||||
Sbjct: 896 tcagcagccaccgatgcagc 915
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>emb|AJ514427.1|ECA514427 Equus caballus mRNA for aquaporin 5 (aqp5 gene)
          Length = 727

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 46  cgctcctcccgctgctcctc 65
           ||||||||||||||||||||
Sbjct: 219 cgctcctcccgctgctcctc 200
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>emb|CR456537.1| Homo sapiens PCQAP full length open reading frame (ORF) cDNA clone
           (cDNA clone C22ORF:pGEM.PCQAP.V2)
          Length = 2226

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 92  tcagcagccaccgatgcagc 111
           ||||||||||||||||||||
Sbjct: 626 tcagcagccaccgatgcagc 645
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>gb|AY610211.1| Sus scrofa clone Clu_9762.scr.msk.p1.Contig1, mRNA sequence
          Length = 2291

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 46   cgctcctcccgctgctcctc 65
            ||||||||||||||||||||
Sbjct: 2038 cgctcctcccgctgctcctc 2057
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>dbj|AK090465.1| Homo sapiens mRNA for FLJ00386 protein
          Length = 3349

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 92  tcagcagccaccgatgcagc 111
           ||||||||||||||||||||
Sbjct: 879 tcagcagccaccgatgcagc 898
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>ref|XM_518941.1| PREDICTED: Pan troglodytes similar to KIAA1950 protein (LOC463233),
            mRNA
          Length = 3125

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 54   ccgctgctcctcgcggccc 72
            |||||||||||||||||||
Sbjct: 1607 ccgctgctcctcgcggccc 1625
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>gb|DQ224364.1| Crocus vernus 18S ribosomal RNA gene, partial sequence; internal
           transcribed spacer 1, 5.8S ribosomal RNA gene, and
           internal transcribed spacer 2, complete sequence; and
           26S ribosomal RNA gene, partial sequence
          Length = 695

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 52  tcccgctgctcctcgcggc 70
           |||||||||||||||||||
Sbjct: 87  tcccgctgctcctcgcggc 105
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>gb|DQ224363.1| Crocus vernus 18S ribosomal RNA gene, partial sequence; and
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           internal transcribed spacer 2, and 26S ribosomal RNA
           gene, complete sequence
          Length = 694

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 52  tcccgctgctcctcgcggc 70
           |||||||||||||||||||
Sbjct: 87  tcccgctgctcctcgcggc 105
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>ref|XM_424642.1| PREDICTED: Gallus gallus similar to Protocadherin beta 1 precursor
           (PCDH-beta1) (LOC427044), partial mRNA
          Length = 1152

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 51  ctcccgctgctcctcgcgg 69
           |||||||||||||||||||
Sbjct: 663 ctcccgctgctcctcgcgg 645
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>ref|XM_428857.1| PREDICTED: Gallus gallus similar to Protocadherin beta 15 precursor
           (LOC431306), partial mRNA
          Length = 1452

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 51  ctcccgctgctcctcgcgg 69
           |||||||||||||||||||
Sbjct: 648 ctcccgctgctcctcgcgg 630
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>ref|XM_424315.1| PREDICTED: Gallus gallus similar to Protocadherin beta 1 precursor
           (PCDH-beta1) (LOC426692), partial mRNA
          Length = 1455

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 51  ctcccgctgctcctcgcgg 69
           |||||||||||||||||||
Sbjct: 966 ctcccgctgctcctcgcgg 948
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>ref|XM_424332.1| PREDICTED: Gallus gallus similar to Protocadherin beta 15 precursor
            (PCDH-beta15) (LOC426713), mRNA
          Length = 1848

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 51   ctcccgctgctcctcgcgg 69
            |||||||||||||||||||
Sbjct: 1038 ctcccgctgctcctcgcgg 1020
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>ref|XM_423902.1| PREDICTED: Gallus gallus similar to Protocadherin beta 1 precursor
           (PCDH-beta1) (LOC426239), partial mRNA
          Length = 1344

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 51  ctcccgctgctcctcgcgg 69
           |||||||||||||||||||
Sbjct: 804 ctcccgctgctcctcgcgg 786
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>ref|XM_423725.1| PREDICTED: Gallus gallus similar to Protocadherin beta 15 precursor
           (PCDH-beta15) (LOC426046), mRNA
          Length = 1687

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 51  ctcccgctgctcctcgcgg 69
           |||||||||||||||||||
Sbjct: 876 ctcccgctgctcctcgcgg 858
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>ref|XM_427149.1| PREDICTED: Gallus gallus similar to Protocadherin beta 15 precursor
           (PCDH-beta15) (LOC429594), partial mRNA
          Length = 764

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 51  ctcccgctgctcctcgcgg 69
           |||||||||||||||||||
Sbjct: 379 ctcccgctgctcctcgcgg 361
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>ref|XM_423165.1| PREDICTED: Gallus gallus similar to Protocadherin beta 15 precursor
           (LOC425401), mRNA
          Length = 2341

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 51  ctcccgctgctcctcgcgg 69
           |||||||||||||||||||
Sbjct: 778 ctcccgctgctcctcgcgg 760
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>ref|XM_427107.1| PREDICTED: Gallus gallus similar to Protocadherin beta 1 precursor
           (PCDH-beta1) (LOC429549), partial mRNA
          Length = 1246

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 51  ctcccgctgctcctcgcgg 69
           |||||||||||||||||||
Sbjct: 648 ctcccgctgctcctcgcgg 630
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>ref|XM_423014.1| PREDICTED: Gallus gallus similar to Protocadherin beta 15 precursor
           (PCDH-beta15) (LOC425230), partial mRNA
          Length = 2013

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 51  ctcccgctgctcctcgcgg 69
           |||||||||||||||||||
Sbjct: 813 ctcccgctgctcctcgcgg 795
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 44     ggcgctcctcccgctgctcctcgcggc 70
              ||||| ||| |||||||||||||||||
Sbjct: 102790 ggcgcccctgccgctgctcctcgcggc 102764
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>ref|XM_323802.1| Neurospora crassa OR74A hypothetical protein (NCU04450.1) partial
            mRNA
          Length = 1974

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 71   cctcatcgtctcctgctcc 89
            |||||||||||||||||||
Sbjct: 1914 cctcatcgtctcctgctcc 1896
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>ref|XM_950815.1| Neurospora crassa OR74A hypothetical protein (NCU04450.1) partial
            mRNA
          Length = 1974

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 71   cctcatcgtctcctgctcc 89
            |||||||||||||||||||
Sbjct: 1914 cctcatcgtctcctgctcc 1896
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>ref|XM_959560.1| Neurospora crassa OR74A related to n-alkane-inducible cytochrome P450
            [MIPS] (NCU02031.1) partial mRNA
          Length = 1488

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 7    ctccagagcgccgatcaag 25
            |||||||||||||||||||
Sbjct: 1089 ctccagagcgccgatcaag 1107
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>ref|XM_329220.1| Neurospora crassa OR74A related to n-alkane-inducible cytochrome P450
            [MIPS] (NCU02031.1) partial mRNA
          Length = 1488

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 7    ctccagagcgccgatcaag 25
            |||||||||||||||||||
Sbjct: 1089 ctccagagcgccgatcaag 1107
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>gb|AC006028.3| Homo sapiens BAC clone GS1-165O14 from 7, complete sequence
          Length = 210608

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 54     ccgctgctcctcgcggccc 72
              |||||||||||||||||||
Sbjct: 158549 ccgctgctcctcgcggccc 158531
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>ref|XM_975741.1| PREDICTED: Mus musculus hypothetical protein LOC665266 (LOC665266),
           mRNA
          Length = 423

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 47  gctcctcccgctgctcctc 65
           |||||||||||||||||||
Sbjct: 148 gctcctcccgctgctcctc 130
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>emb|AJ635357.1| Homo sapiens mRNA for metalloproteinase-like protein (AMZ1 gene)
          Length = 1497

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 54  ccgctgctcctcgcggccc 72
           |||||||||||||||||||
Sbjct: 420 ccgctgctcctcgcggccc 438
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>gb|AC183798.2| Pan troglodytes BAC clone CH251-424F21 from chromosome 7, complete
              sequence
          Length = 153775

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 54     ccgctgctcctcgcggccc 72
              |||||||||||||||||||
Sbjct: 120421 ccgctgctcctcgcggccc 120439
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>emb|BX908808.1| Neurospora crassa DNA linkage group IV Cosmid contig G21B4
          Length = 177225

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 71    cctcatcgtctcctgctcc 89
             |||||||||||||||||||
Sbjct: 39965 cctcatcgtctcctgctcc 39947
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>emb|AL442164.1|NCB2J23 Neurospora crassa DNA linkage group I BAC clone B2J23
          Length = 65725

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 7     ctccagagcgccgatcaag 25
             |||||||||||||||||||
Sbjct: 27438 ctccagagcgccgatcaag 27420
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>gb|AC010063.7| Drosophila melanogaster 3L BAC RP98-16A3 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 194006

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 98    gccaccgatgcagccgccg 116
             |||||||||||||||||||
Sbjct: 49825 gccaccgatgcagccgccg 49843
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>gb|AC091222.3| Drosophila melanogaster 3L BAC RP98-11G24 (Roswell Park Cancer
           Institute Drosophila BAC Library) complete sequence
          Length = 144056

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 98  gccaccgatgcagccgccg 116
           |||||||||||||||||||
Sbjct: 107 gccaccgatgcagccgccg 89
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 99      ccaccgatgcagccgccgccaac 121
               ||||||||||| |||||||||||
Sbjct: 2739524 ccaccgatgcaaccgccgccaac 2739546
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>dbj|AK092107.1| Homo sapiens cDNA FLJ34788 fis, clone NT2NE2004787
          Length = 1862

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 54  ccgctgctcctcgcggccc 72
           |||||||||||||||||||
Sbjct: 733 ccgctgctcctcgcggccc 751
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>gb|AC010198.8| Homo sapiens 12p11-37.2-54.4 BAC RP11-77I22 (Roswell Park Cancer
             Institute Human BAC Library) complete sequence
          Length = 199070

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 45    gcgctcctcccgctgctcc 63
             |||||||||||||||||||
Sbjct: 98825 gcgctcctcccgctgctcc 98807
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>ref|NM_133463.1| Homo sapiens archaemetzincin-1 (AMZ1), mRNA
          Length = 4415

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 54  ccgctgctcctcgcggccc 72
           |||||||||||||||||||
Sbjct: 781 ccgctgctcctcgcggccc 799
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>gb|AC151895.4| Mus musculus BAC clone RP24-323A22 from chromosome 10, complete
             sequence
          Length = 224442

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 20    atcaagagtcaccagactg 38
             |||||||||||||||||||
Sbjct: 29555 atcaagagtcaccagactg 29573
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>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII,
              complete sequence
          Length = 1476513

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 45     gcgctcctcccgctgctcc 63
              |||||||||||||||||||
Sbjct: 309943 gcgctcctcccgctgctcc 309925
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 100      caccgatgcagccgccgcc 118
                |||||||||||||||||||
Sbjct: 23590208 caccgatgcagccgccgcc 23590190
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>gb|AC123530.4| Mus musculus BAC clone RP24-194D2 from chromosome 10, complete sequence
          Length = 164420

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 20     atcaagagtcaccagactg 38
              |||||||||||||||||||
Sbjct: 107074 atcaagagtcaccagactg 107092
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 49      tcctcccgctgctcctcgc 67
               |||||||||||||||||||
Sbjct: 3061508 tcctcccgctgctcctcgc 3061526
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>gb|AE005111.1| Halobacterium sp. NRC-1 section 142 of 170 of the complete genome
          Length = 11925

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 43  tggcgctcctcccgctgctcctc 65
           |||||||| ||||||||||||||
Sbjct: 644 tggcgctcgtcccgctgctcctc 622
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>gb|AC147872.3| Monodelphis domestica clone VMRC6-555H19, complete sequence
          Length = 139145

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 27    gtcaccagactgaaaatgg 45
             |||||||||||||||||||
Sbjct: 64049 gtcaccagactgaaaatgg 64067
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>emb|Z56184.1|HS92F9F H.sapiens CpG island DNA genomic Mse1 fragment, clone 92f9,
          forward read cpg92f9.ft1a
          Length = 248

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 45 gcgctcctcccgctgctcc 63
          |||||||||||||||||||
Sbjct: 99 gcgctcctcccgctgctcc 81
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>gb|AE003473.3| Drosophila melanogaster chromosome 3L, section 7 of 83 of the complete
              sequence
          Length = 315108

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 98     gccaccgatgcagccgccg 116
              |||||||||||||||||||
Sbjct: 182070 gccaccgatgcagccgccg 182052
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 99      ccaccgatgcagccgccgccaac 121
               ||||||||||| |||||||||||
Sbjct: 2760061 ccaccgatgcaaccgccgccaac 2760083
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 100      caccgatgcagccgccgcc 118
                |||||||||||||||||||
Sbjct: 23518399 caccgatgcagccgccgcc 23518381
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>emb|AL772425.7|CNS08CA3 Oryza sativa chromosome 12, . BAC OJ1396_C02 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 157690

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 100    caccgatgcagccgccgcc 118
              |||||||||||||||||||
Sbjct: 116202 caccgatgcagccgccgcc 116220
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>emb|AL662809.14| Mouse DNA sequence from clone RP23-441I8 on chromosome 11, complete
             sequence
          Length = 103129

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 94    agcagccaccgatgcagcc 112
             |||||||||||||||||||
Sbjct: 14074 agcagccaccgatgcagcc 14056
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>gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold
          Length = 1833844

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 27      gtcaccagactgaaaatgg 45
               |||||||||||||||||||
Sbjct: 1700376 gtcaccagactgaaaatgg 1700394
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>gb|L28827.1|MUSHDH Mouse Huntington's Disease gene homologue (Hdh) mRNA, complete cds
          Length = 9998

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 93  cagcagccaccgatgcagccgccgcca 119
           ||||||||||||  |||||||||||||
Sbjct: 156 cagcagccaccgccgcagccgccgcca 182
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>emb|AL611963.24| Mouse DNA sequence from clone RP23-79J18 on chromosome 4, complete
              sequence
          Length = 222196

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 47     gctcctcccgctgctcctc 65
              |||||||||||||||||||
Sbjct: 153940 gctcctcccgctgctcctc 153922
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>dbj|AB075830.1| Homo sapiens mRNA for KIAA1950 protein
          Length = 4415

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 54  ccgctgctcctcgcggccc 72
           |||||||||||||||||||
Sbjct: 781 ccgctgctcctcgcggccc 799
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>dbj|AB071600.1| Oryza sativa (japonica cultivar-group) gene for transcription factor
            OsRS2, complete cds, cultivar:Nipponbare
          Length = 6510

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 100  caccgatgcagccgccgcc 118
            |||||||||||||||||||
Sbjct: 4422 caccgatgcagccgccgcc 4440
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>dbj|AB064519.1| Oryza sativa (japonica cultivar-group) OsRS2 mRNA for transcription
           factor rough sheath 2 like protein, complete cds
          Length = 1512

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 100 caccgatgcagccgccgcc 118
           |||||||||||||||||||
Sbjct: 251 caccgatgcagccgccgcc 269


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 925,386
Number of Sequences: 3902068
Number of extensions: 925386
Number of successful extensions: 69811
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69231
Number of HSP's gapped (non-prelim): 580
length of query: 138
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 117
effective length of database: 17,151,101,840
effective search space: 2006678915280
effective search space used: 2006678915280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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