ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet56c09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY108268.1| Zea mays PCO078526 mRNA sequence Length = 1437 Score = 71.9 bits (36), Expect = 9e-10 Identities = 39/40 (97%) Strand = Plus / Plus Query: 103 cagccatgtcgtgctcccacctctccaccgcgtggtcctc 142 ||||||||||||||||||||||||||||||| |||||||| Sbjct: 94 cagccatgtcgtgctcccacctctccaccgcctggtcctc 133 Score = 54.0 bits (27), Expect = 2e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 199 tggtgcggtgctccctccgggacctccgcaaccgcatcgactc 241 |||||||||| |||||||| || ||||||| |||||||||||| Sbjct: 196 tggtgcggtgttccctccgtgagctccgcacccgcatcgactc 238
>ref|XM_478377.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1469 Score = 67.9 bits (34), Expect = 1e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 101 gccagccatgtcgtgctcccacctctccaccgcgtggtcctc 142 |||||||||||||||||| |||||||||||||| |||||||| Sbjct: 43 gccagccatgtcgtgctcgcacctctccaccgcctggtcctc 84
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 67.9 bits (34), Expect = 1e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 101 gccagccatgtcgtgctcccacctctccaccgcgtggtcctc 142 |||||||||||||||||| |||||||||||||| |||||||| Sbjct: 19603838 gccagccatgtcgtgctcgcacctctccaccgcctggtcctc 19603797 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1 aaacccaatccaaaatctttccctcc 26 ||||||||||| |||||||||||||| Sbjct: 19603903 aaacccaatccgaaatctttccctcc 19603878
>dbj|AP005196.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0580A11 Length = 174673 Score = 67.9 bits (34), Expect = 1e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 101 gccagccatgtcgtgctcccacctctccaccgcgtggtcctc 142 |||||||||||||||||| |||||||||||||| |||||||| Sbjct: 147182 gccagccatgtcgtgctcgcacctctccaccgcctggtcctc 147141 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1 aaacccaatccaaaatctttccctcc 26 ||||||||||| |||||||||||||| Sbjct: 147247 aaacccaatccgaaatctttccctcc 147222
>dbj|AP005176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0041J06 Length = 138157 Score = 67.9 bits (34), Expect = 1e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 101 gccagccatgtcgtgctcccacctctccaccgcgtggtcctc 142 |||||||||||||||||| |||||||||||||| |||||||| Sbjct: 42488 gccagccatgtcgtgctcgcacctctccaccgcctggtcctc 42447 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1 aaacccaatccaaaatctttccctcc 26 ||||||||||| |||||||||||||| Sbjct: 42553 aaacccaatccgaaatctttccctcc 42528
>dbj|AK105071.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-C11, full insert sequence Length = 2822 Score = 67.9 bits (34), Expect = 1e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 101 gccagccatgtcgtgctcccacctctccaccgcgtggtcctc 142 |||||||||||||||||| |||||||||||||| |||||||| Sbjct: 1508 gccagccatgtcgtgctcgcacctctccaccgcctggtcctc 1549 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1 aaacccaatccaaaatctttccctcc 26 ||||||||||| |||||||||||||| Sbjct: 1443 aaacccaatccgaaatctttccctcc 1468
>dbj|AK072104.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116B21, full insert sequence Length = 1470 Score = 67.9 bits (34), Expect = 1e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 101 gccagccatgtcgtgctcccacctctccaccgcgtggtcctc 142 |||||||||||||||||| |||||||||||||| |||||||| Sbjct: 43 gccagccatgtcgtgctcgcacctctccaccgcctggtcctc 84
>dbj|AK064835.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F20, full insert sequence Length = 1482 Score = 67.9 bits (34), Expect = 1e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 101 gccagccatgtcgtgctcccacctctccaccgcgtggtcctc 142 |||||||||||||||||| |||||||||||||| |||||||| Sbjct: 148 gccagccatgtcgtgctcgcacctctccaccgcctggtcctc 189 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1 aaacccaatccaaaatctttccctcc 26 ||||||||||| |||||||||||||| Sbjct: 83 aaacccaatccgaaatctttccctcc 108
>ref|XM_525566.1| PREDICTED: Pan troglodytes similar to smoothelin isoform b (LOC470182), mRNA Length = 1584 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Plus Query: 164 cacccgccgccgcgcctccaccggca 189 ||||||||||||| |||||||||||| Sbjct: 384 cacccgccgccgctcctccaccggca 409
>gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0009F15, complete sequence Length = 142289 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Minus Query: 164 cacccgccgccgcgcctccacc 185 |||||||||||||||||||||| Sbjct: 72492 cacccgccgccgcgcctccacc 72471
>dbj|AK128627.1| Homo sapiens cDNA FLJ46786 fis, clone TRACH3028837, moderately similar to Smoothelin Length = 4954 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Plus Query: 164 cacccgccgccgcgcctccaccggca 189 ||||||||||||| |||||||||||| Sbjct: 3466 cacccgccgccgctcctccaccggca 3491
>dbj|AK095930.1| Homo sapiens cDNA FLJ38611 fis, clone HEART2005610, highly similar to Homo sapiens smoothelin large isoform L2 (SMTN) mRNA Length = 2938 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Plus Query: 164 cacccgccgccgcgcctccaccggca 189 ||||||||||||| |||||||||||| Sbjct: 360 cacccgccgccgctcctccaccggca 385
>dbj|AK092684.1| Homo sapiens cDNA FLJ35365 fis, clone SKMUS2000873, highly similar to Smoothelin large isoform L2 Length = 1736 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Plus Query: 164 cacccgccgccgcgcctccaccggca 189 ||||||||||||| |||||||||||| Sbjct: 474 cacccgccgccgctcctccaccggca 499
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Minus Query: 164 cacccgccgccgcgcctccacc 185 |||||||||||||||||||||| Sbjct: 4421129 cacccgccgccgcgcctccacc 4421108 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 ccgccgccgcgcctccaccg 186 |||||||||||||||||||| Sbjct: 162292 ccgccgccgcgcctccaccg 162273
>gb|AC005005.1|AC005005 Homo sapiens PAC clone RP3-412A9 from 22, complete sequence Length = 133893 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Minus Query: 164 cacccgccgccgcgcctccaccggca 189 ||||||||||||| |||||||||||| Sbjct: 84278 cacccgccgccgctcctccaccggca 84253
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Minus Query: 164 cacccgccgccgcgcctccacc 185 |||||||||||||||||||||| Sbjct: 4429823 cacccgccgccgcgcctccacc 4429802 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 ccgccgccgcgcctccaccg 186 |||||||||||||||||||| Sbjct: 162292 ccgccgccgcgcctccaccg 162273
>gb|AC138679.10| Mus musculus chromosome 5, clone RP23-177I4, complete sequence Length = 230184 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 tctttccctccctcccatcct 36 ||||||||||||||||||||| Sbjct: 183496 tctttccctccctcccatcct 183516
>gb|AC007448.14| Homo sapiens chromosome 17, clone RP11-401F2, complete sequence Length = 195558 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Minus Query: 116 ctcccacctctccaccgcgtg 136 ||||||||||||||||||||| Sbjct: 115856 ctcccacctctccaccgcgtg 115836
>gb|AC144365.3| Didelphis virginiana clone LB3-90O15, complete sequence Length = 145168 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 tccaaaatctttccctccctc 29 ||||||||||||||||||||| Sbjct: 54399 tccaaaatctttccctccctc 54379
>gb|AC109198.9| Mus musculus chromosome 15, clone RP23-31G10, complete sequence Length = 207069 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 atctttccctccctcccatcc 35 ||||||||||||||||||||| Sbjct: 87645 atctttccctccctcccatcc 87665
>gb|AC131803.3| Mus musculus BAC clone RP24-549I15 from chromosome 5, complete sequence Length = 168439 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Minus Query: 16 tctttccctccctcccatcct 36 ||||||||||||||||||||| Sbjct: 24930 tctttccctccctcccatcct 24910
>gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold Length = 1751794 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 tccaaaatctttccctccctc 29 ||||||||||||||||||||| Sbjct: 1074704 tccaaaatctttccctccctc 1074684
>emb|AL672242.12| Mouse DNA sequence from clone RP23-83P17 on chromosome 17, complete sequence Length = 222709 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Minus Query: 16 tctttccctccctcccatcct 36 ||||||||||||||||||||| Sbjct: 56619 tctttccctccctcccatcct 56599
>ref|XM_550300.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1389 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 165 acccgccgccgcgcctccaccggc 188 ||||||||||||||| |||||||| Sbjct: 680 acccgccgccgcgccgccaccggc 657
>ref|NM_191592.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1677 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 165 acccgccgccgcgcctccaccggc 188 ||||||||||||||| |||||||| Sbjct: 970 acccgccgccgcgccgccaccggc 947
>gb|AF114171.1| Sorghum bicolor BAC clone 25.M18, complete sequence Length = 183990 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 185 cggcagcagcctggtggtgcggtg 208 |||||||||| ||||||||||||| Sbjct: 108746 cggcagcagcatggtggtgcggtg 108723
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 182 caccggcagcagcctggtggtgcg 205 |||||||||||||| ||||||||| Sbjct: 3381727 caccggcagcagcccggtggtgcg 3381704
>gb|AC123736.8| Mus musculus chromosome 3, clone RP23-478I18, complete sequence Length = 189063 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 tctttccctccctcccatcc 35 |||||||||||||||||||| Sbjct: 39616 tctttccctccctcccatcc 39597
>gb|AC153594.15| Mus musculus 10 BAC RP23-98N14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 208555 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 cctctccaccgcgtggtcct 141 |||||||||||||||||||| Sbjct: 166784 cctctccaccgcgtggtcct 166803
>gb|AY386263.1| Orf virus strain OV-IA82, complete genome Length = 137241 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 166 cccgccgccgcgcctccaccggca 189 ||||||||||||||||| |||||| Sbjct: 92409 cccgccgccgcgcctcctccggca 92386
>emb|AL672032.6| Human DNA sequence from clone RP11-308B5 on chromosome X Contains a novel gene, the 5' end of the PLAC1 gene for placenta-specific 1, a ribosomal protein L21 (RPL21) pseudogene, a ribosomal protein S7 (RPS7) pseudogene and the 3' end of the LOC169090 gene, complete sequence Length = 209317 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 tctttccctccctcccatcc 35 |||||||||||||||||||| Sbjct: 11284 tctttccctccctcccatcc 11265
>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16 Length = 346274 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 gcagcagcctggtggtgcgg 206 |||||||||||||||||||| Sbjct: 39950 gcagcagcctggtggtgcgg 39931
>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14 Length = 348014 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 gcagcagcctggtggtgcgg 206 |||||||||||||||||||| Sbjct: 303828 gcagcagcctggtggtgcgg 303809
>emb|BX640421.1| Bordetella pertussis strain Tohama I, complete genome; segment 11/12 Length = 349726 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 gcagcagcctggtggtgcgg 206 |||||||||||||||||||| Sbjct: 274890 gcagcagcctggtggtgcgg 274871
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 ccgccgccgcgcctccaccg 186 |||||||||||||||||||| Sbjct: 155913 ccgccgccgcgcctccaccg 155894
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 acccgccgccgcgcctccaccggc 188 ||||||||||||||| |||||||| Sbjct: 3835130 acccgccgccgcgccgccaccggc 3835153
>gb|AC157095.9| Mus musculus 6 BAC RP24-350P11 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 177800 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 cctctccaccgcgtggtcct 141 |||||||||||||||||||| Sbjct: 175229 cctctccaccgcgtggtcct 175210
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 172 gccgcgcctccaccggcagcagcc 195 ||||||||||||||||||| |||| Sbjct: 4558276 gccgcgcctccaccggcaggagcc 4558299
>dbj|AP003215.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0089K24 Length = 154137 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 acccgccgccgcgcctccaccggc 188 ||||||||||||||| |||||||| Sbjct: 108672 acccgccgccgcgccgccaccggc 108695
>dbj|AK101660.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057J01, full insert sequence Length = 1975 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 165 acccgccgccgcgcctccaccggc 188 ||||||||||||||| |||||||| Sbjct: 974 acccgccgccgcgccgccaccggc 951
>dbj|AK073313.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033027F03, full insert sequence Length = 1389 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 165 acccgccgccgcgcctccaccggc 188 ||||||||||||||| |||||||| Sbjct: 680 acccgccgccgcgccgccaccggc 657
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 agcacttccacccgccgccg 175 |||||||||||||||||||| Sbjct: 1385501 agcacttccacccgccgccg 1385520
>dbj|AK062282.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-C06, full insert sequence Length = 1677 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 165 acccgccgccgcgcctccaccggc 188 ||||||||||||||| |||||||| Sbjct: 970 acccgccgccgcgccgccaccggc 947
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 ccgccgccgcgcctccaccg 186 |||||||||||||||||||| Sbjct: 155913 ccgccgccgcgcctccaccg 155894
>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 160673 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 ccgccgccgcgcctccaccg 186 |||||||||||||||||||| Sbjct: 142701 ccgccgccgcgcctccaccg 142720
>emb|BX000496.1|CNS08CDM Oryza sativa chromosome 12, . BAC OSJNBa0096E03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 161808 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 ccgccgccgcgcctccaccg 186 |||||||||||||||||||| Sbjct: 107522 ccgccgccgcgcctccaccg 107503 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,058,226 Number of Sequences: 3902068 Number of extensions: 2058226 Number of successful extensions: 62557 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62078 Number of HSP's gapped (non-prelim): 479 length of query: 248 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 226 effective length of database: 17,147,199,772 effective search space: 3875267148472 effective search space used: 3875267148472 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
