ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet53d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PSAF_HORVU (P13192) Photosystem I reaction center subunit III, c... 54 1e-07

>PSAF_HORVU (P13192) Photosystem I reaction center subunit III, chloroplast|
           precursor (Light-harvesting complex I 17 kDa protein)
           (PSI-F)
          Length = 235

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 26/26 (100%), Positives = 26/26 (100%)
 Frame = +3

Query: 96  VSCSASSGDNNNSTATPSLSASIKTF 173
           VSCSASSGDNNNSTATPSLSASIKTF
Sbjct: 29  VSCSASSGDNNNSTATPSLSASIKTF 54


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,702,169
Number of Sequences: 219361
Number of extensions: 233848
Number of successful extensions: 924
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 80,573,946
effective HSP length: 56
effective length of database: 68,289,730
effective search space used: 1638953520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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