ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet53c07 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransglycosylase-like protein (XEA) Length = 1174 Score = 232 bits (117), Expect = 5e-58 Identities = 165/181 (91%) Strand = Plus / Plus Query: 115 gcatggctcgcatggcggtgtcggtgctggcgatcctgctcgcctggtgcgccctggcgg 174 ||||||||||||||| || ||||||||| ||||||||||||||| ||||||||||||| Sbjct: 47 gcatggctcgcatgggggcgtcggtgctttcgatcctgctcgcctcttgcgccctggcgg 106 Query: 175 cggcgagcttcgacaaggagttcgacatcacctggggcgacgggcgtggcaagatcctga 234 |||||||||||||||||||||||||| | |||||||| |||||||| ||||||||||| | Sbjct: 107 cggcgagcttcgacaaggagttcgacgttacctggggtgacgggcgcggcaagatcctca 166 Query: 235 acaatggtcagctcctgacgctggcgctggacaaggtgtccggctccgggttccagtcca 294 |||| || |||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 167 acaacggccagctcctgacgctgggactggacaaggtctccggctccgggttccagtcca 226 Query: 295 a 295 | Sbjct: 227 a 227
>emb|AJ295943.1|FPR295943 Festuca pratensis mRNA for Xet1 protein Length = 1187 Score = 200 bits (101), Expect = 2e-48 Identities = 163/183 (89%), Gaps = 3/183 (1%) Strand = Plus / Plus Query: 116 catggctcgcatggcggtgtcggtgctggcgatcctgctcgcctggtgcgccct---ggc 172 ||||||||||||||||||||||||||||||||||||||| || | || ||| | ||| Sbjct: 123 catggctcgcatggcggtgtcggtgctggcgatcctgctggcgtcttgtgccgttgcggc 182 Query: 173 ggcggcgagcttcgacaaggagttcgacatcacctggggcgacgggcgtggcaagatcct 232 ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| Sbjct: 183 ggcggcgagcttcgacaaggagttcgacatcacgtggggcgacggccgtggaaagatcct 242 Query: 233 gaacaatggtcagctcctgacgctggcgctggacaaggtgtccggctccgggttccagtc 292 |||||||| ||||||||||| |||| |||||||||| ||||| |||||||||||||| Sbjct: 243 caacaatgggcagctcctgaccctggggctggacaagacctccgggtccgggttccagtc 302 Query: 293 caa 295 ||| Sbjct: 303 caa 305
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 99.6 bits (50), Expect = 5e-18 Identities = 92/106 (86%) Strand = Plus / Minus Query: 190 aggagttcgacatcacctggggcgacgggcgtggcaagatcctgaacaatggtcagctcc 249 ||||||||||||||||||||||||| || |||||||||||||| | |||| ||||| | Sbjct: 28774036 aggagttcgacatcacctggggcgatggccgtggcaagatcctcgaggatggccagctgc 28773977 Query: 250 tgacgctggcgctggacaaggtgtccggctccgggttccagtccaa 295 ||||||| ||||||||| | ||||||||| |||||||||||||| Sbjct: 28773976 tgacgctcacgctggacaggacgtccggctcagggttccagtccaa 28773931 Score = 91.7 bits (46), Expect = 1e-15 Identities = 85/98 (86%) Strand = Plus / Plus Query: 198 gacatcacctggggcgacgggcgtggcaagatcctgaacaatggtcagctcctgacgctg 257 |||||||| ||||||||||| || ||||||||||| ||| || ||||||||||||||| Sbjct: 28761419 gacatcacttggggcgacggccgcggcaagatcctcggcaacggccagctcctgacgctg 28761478 Query: 258 gcgctggacaaggtgtccggctccgggttccagtccaa 295 ||||||||| | |||||||||||| ||||||||||| Sbjct: 28761479 tcgctggacaggtcgtccggctccggcttccagtccaa 28761516
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0028E05 Length = 157631 Score = 99.6 bits (50), Expect = 5e-18 Identities = 92/106 (86%) Strand = Plus / Minus Query: 190 aggagttcgacatcacctggggcgacgggcgtggcaagatcctgaacaatggtcagctcc 249 ||||||||||||||||||||||||| || |||||||||||||| | |||| ||||| | Sbjct: 81811 aggagttcgacatcacctggggcgatggccgtggcaagatcctcgaggatggccagctgc 81752 Query: 250 tgacgctggcgctggacaaggtgtccggctccgggttccagtccaa 295 ||||||| ||||||||| | ||||||||| |||||||||||||| Sbjct: 81751 tgacgctcacgctggacaggacgtccggctcagggttccagtccaa 81706 Score = 91.7 bits (46), Expect = 1e-15 Identities = 85/98 (86%) Strand = Plus / Plus Query: 198 gacatcacctggggcgacgggcgtggcaagatcctgaacaatggtcagctcctgacgctg 257 |||||||| ||||||||||| || ||||||||||| ||| || ||||||||||||||| Sbjct: 69194 gacatcacttggggcgacggccgcggcaagatcctcggcaacggccagctcctgacgctg 69253 Query: 258 gcgctggacaaggtgtccggctccgggttccagtccaa 295 ||||||||| | |||||||||||| ||||||||||| Sbjct: 69254 tcgctggacaggtcgtccggctccggcttccagtccaa 69291
>dbj|AK120345.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063H05, full insert sequence Length = 566 Score = 99.6 bits (50), Expect = 5e-18 Identities = 92/106 (86%) Strand = Plus / Plus Query: 190 aggagttcgacatcacctggggcgacgggcgtggcaagatcctgaacaatggtcagctcc 249 ||||||||||||||||||||||||| || |||||||||||||| | |||| ||||| | Sbjct: 196 aggagttcgacatcacctggggcgatggccgtggcaagatcctcgaggatggccagctgc 255 Query: 250 tgacgctggcgctggacaaggtgtccggctccgggttccagtccaa 295 ||||||| ||||||||| | ||||||||| |||||||||||||| Sbjct: 256 tgacgctcacgctggacaggacgtccggctcagggttccagtccaa 301
>dbj|AK105513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-F01, full insert sequence Length = 1253 Score = 99.6 bits (50), Expect = 5e-18 Identities = 92/106 (86%) Strand = Plus / Plus Query: 190 aggagttcgacatcacctggggcgacgggcgtggcaagatcctgaacaatggtcagctcc 249 ||||||||||||||||||||||||| || |||||||||||||| | |||| ||||| | Sbjct: 186 aggagttcgacatcacctggggcgatggccgtggcaagatcctcgaggatggccagctgc 245 Query: 250 tgacgctggcgctggacaaggtgtccggctccgggttccagtccaa 295 ||||||| ||||||||| | ||||||||| |||||||||||||| Sbjct: 246 tgacgctcacgctggacaggacgtccggctcagggttccagtccaa 291
>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0622F03 Length = 170064 Score = 91.7 bits (46), Expect = 1e-15 Identities = 85/98 (86%) Strand = Plus / Plus Query: 198 gacatcacctggggcgacgggcgtggcaagatcctgaacaatggtcagctcctgacgctg 257 |||||||| ||||||||||| || ||||||||||| ||| || ||||||||||||||| Sbjct: 161985 gacatcacttggggcgacggccgcggcaagatcctcggcaacggccagctcctgacgctg 162044 Query: 258 gcgctggacaaggtgtccggctccgggttccagtccaa 295 ||||||||| | |||||||||||| ||||||||||| Sbjct: 162045 tcgctggacaggtcgtccggctccggcttccagtccaa 162082
>dbj|AK105934.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-B05, full insert sequence Length = 1101 Score = 91.7 bits (46), Expect = 1e-15 Identities = 85/98 (86%) Strand = Plus / Plus Query: 198 gacatcacctggggcgacgggcgtggcaagatcctgaacaatggtcagctcctgacgctg 257 |||||||| ||||||||||| || ||||||||||| ||| || ||||||||||||||| Sbjct: 185 gacatcacttggggcgacggccgcggcaagatcctcggcaacggccagctcctgacgctg 244 Query: 258 gcgctggacaaggtgtccggctccgggttccagtccaa 295 ||||||||| | |||||||||||| ||||||||||| Sbjct: 245 tcgctggacaggtcgtccggctccggcttccagtccaa 282
>gb|AY103775.1| Zea mays PCO076979 mRNA sequence Length = 1495 Score = 77.8 bits (39), Expect = 2e-11 Identities = 102/123 (82%) Strand = Plus / Plus Query: 171 gcggcggcgagcttcgacaaggagttcgacatcacctggggcgacgggcgtggcaagatc 230 ||||||| ||||| ||| ||||| | |||||||| |||||||||||||| |||||| || Sbjct: 207 gcggcgggcagcttggaccaggagctggacatcacgtggggcgacgggcggggcaaggtc 266 Query: 231 ctgaacaatggtcagctcctgacgctggcgctggacaaggtgtccggctccgggttccag 290 || |||| || | ||| ||||||||| |||||||| ||||||||||||||||||| Sbjct: 267 cttgacaacgggcggctgctgacgctgtcgctggaccgcacgtccggctccgggttccag 326 Query: 291 tcc 293 ||| Sbjct: 327 tcc 329
>gb|AY105365.1| Zea mays PCO092487 mRNA sequence Length = 1253 Score = 75.8 bits (38), Expect = 7e-11 Identities = 83/98 (84%) Strand = Plus / Plus Query: 198 gacatcacctggggcgacgggcgtggcaagatcctgaacaatggtcagctcctgacgctg 257 |||||||||||||||||||| || ||||||||||| |||| || ||||||||||||||| Sbjct: 198 gacatcacctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctg 257 Query: 258 gcgctggacaaggtgtccggctccgggttccagtccaa 295 | |||||| | |||||||| || ||||||||||| Sbjct: 258 tccatggacaggtcctccggctcgggcttccagtccaa 295
>gb|U15964.1|ZMU15964 Zea mays xyloglucan endo-transglycosylase homolog gene, complete cds Length = 1827 Score = 75.8 bits (38), Expect = 7e-11 Identities = 83/98 (84%) Strand = Plus / Plus Query: 198 gacatcacctggggcgacgggcgtggcaagatcctgaacaatggtcagctcctgacgctg 257 |||||||||||||||||||| || ||||||||||| |||| || ||||||||||||||| Sbjct: 88 gacatcacctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctg 147 Query: 258 gcgctggacaaggtgtccggctccgggttccagtccaa 295 | |||||| | |||||||| || ||||||||||| Sbjct: 148 tccatggacaggtcctccggctcgggcttccagtccaa 185
>gb|U15781.1|ZMU15781 Zea mays xyloglucan endo-transglycosylase homolog mRNA, complete cds Length = 1221 Score = 75.8 bits (38), Expect = 7e-11 Identities = 83/98 (84%) Strand = Plus / Plus Query: 198 gacatcacctggggcgacgggcgtggcaagatcctgaacaatggtcagctcctgacgctg 257 |||||||||||||||||||| || ||||||||||| |||| || ||||||||||||||| Sbjct: 205 gacatcacctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctg 264 Query: 258 gcgctggacaaggtgtccggctccgggttccagtccaa 295 | |||||| | |||||||| || ||||||||||| Sbjct: 265 tccatggacaggtcctccggctcgggcttccagtccaa 302
>dbj|AB196977.1| Sagittaria pygmaea SpXTH4 mRNA for xyloglucan endotransglucosylase/hydrolase, complete cds Length = 1181 Score = 54.0 bits (27), Expect = 3e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 180 agcttcgacaaggagttcgacatcacctggggcgacgggcgtggcaagatcctgaacaat 239 |||||| |||| || ||||||||||||||||| || || || || |||||||| ||||| Sbjct: 316 agcttcaacaacgatttcgacatcacctggggtgatggccgggggaagatcctaaacaac 375 Query: 240 ggtcagctcct 250 || |||||||| Sbjct: 376 ggccagctcct 386
>gb|AY103891.1| Zea mays PCO065722 mRNA sequence Length = 1280 Score = 48.1 bits (24), Expect = 0.016 Identities = 24/24 (100%) Strand = Plus / Plus Query: 272 gtccggctccgggttccagtccaa 295 |||||||||||||||||||||||| Sbjct: 291 gtccggctccgggttccagtccaa 314
>ref|XM_473793.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 966 Score = 46.1 bits (23), Expect = 0.063 Identities = 23/23 (100%) Strand = Plus / Plus Query: 273 tccggctccgggttccagtccaa 295 ||||||||||||||||||||||| Sbjct: 211 tccggctccgggttccagtccaa 233
>emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015N08, complete sequence Length = 129037 Score = 46.1 bits (23), Expect = 0.063 Identities = 23/23 (100%) Strand = Plus / Minus Query: 273 tccggctccgggttccagtccaa 295 ||||||||||||||||||||||| Sbjct: 32994 tccggctccgggttccagtccaa 32972
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 46.1 bits (23), Expect = 0.063 Identities = 23/23 (100%) Strand = Plus / Minus Query: 273 tccggctccgggttccagtccaa 295 ||||||||||||||||||||||| Sbjct: 30557286 tccggctccgggttccagtccaa 30557264
>dbj|AK059203.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-A11, full insert sequence Length = 1234 Score = 46.1 bits (23), Expect = 0.063 Identities = 23/23 (100%) Strand = Plus / Plus Query: 273 tccggctccgggttccagtccaa 295 ||||||||||||||||||||||| Sbjct: 279 tccggctccgggttccagtccaa 301
>gb|AY528719.1| Homo sapiens estrogen-related receptor gamma (ESRRG) gene, complete cds Length = 590284 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 20 ttccagcttttcatccttctca 41 |||||||||||||||||||||| Sbjct: 29251 ttccagcttttcatccttctca 29272
>gb|AC096634.2| Homo sapiens chromosome 1 clone RP11-66M7, complete sequence Length = 163926 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 20 ttccagcttttcatccttctca 41 |||||||||||||||||||||| Sbjct: 92371 ttccagcttttcatccttctca 92350
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 125 catggcggtgtcggtgctggcg 146 |||||||||||||||||||||| Sbjct: 2218712 catggcggtgtcggtgctggcg 2218691
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 42.1 bits (21), Expect = 0.98 Identities = 24/25 (96%) Strand = Plus / Plus Query: 254 gctggcgctggacaaggtgtccggc 278 ||||||||||||||||||| ||||| Sbjct: 1311448 gctggcgctggacaaggtgcccggc 1311472
>gb|AC153624.20| Mus musculus 6 BAC RP23-117P3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 224115 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 tatttgtcttgtgacttgtg 67 |||||||||||||||||||| Sbjct: 221597 tatttgtcttgtgacttgtg 221616
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 3.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 131 ggtgtcggtgctggcgatcctgctcgcc 158 |||| ||||| ||||||||||||||||| Sbjct: 3145732 ggtgccggtgatggcgatcctgctcgcc 3145705
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 3.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 131 ggtgtcggtgctggcgatcctgctcgcc 158 |||| ||||| ||||||||||||||||| Sbjct: 1655427 ggtgccggtgatggcgatcctgctcgcc 1655454
>gb|AC133508.3| Mus musculus BAC clone RP23-383K24 from chromosome 3, complete sequence Length = 192136 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 caagagcccttccagctttt 30 |||||||||||||||||||| Sbjct: 115657 caagagcccttccagctttt 115638
>gb|AE009201.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 227 of 256 of the complete sequence Length = 11399 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 175 cggcgagcttcgacaaggagttcg 198 ||||||||||||||||||| |||| Sbjct: 4271 cggcgagcttcgacaaggatttcg 4294
>gb|AY460341.1| Oncopeltus fasciatus hunchback mRNA, complete cds Length = 2071 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 cgacatcacctggggcgacg 216 |||||||||||||||||||| Sbjct: 723 cgacatcacctggggcgacg 742
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 249 ctgacgctggcgctggacaaggtg 272 |||||||||||||||| ||||||| Sbjct: 195103 ctgacgctggcgctggccaaggtg 195126
>gb|AC122345.4| Mus musculus BAC clone RP23-366P9 from chromosome 6, complete sequence Length = 199923 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 tatttgtcttgtgacttgtg 67 |||||||||||||||||||| Sbjct: 66091 tatttgtcttgtgacttgtg 66110
>gb|AC121984.3| Mus musculus BAC clone RP24-292L23 from chromosome 3, complete sequence Length = 145348 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 cttttcatccttctcatcaa 45 |||||||||||||||||||| Sbjct: 112181 cttttcatccttctcatcaa 112162
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 3.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 131 ggtgtcggtgctggcgatcctgctcgcc 158 |||| ||||| ||||||||||||||||| Sbjct: 1542370 ggtgccggtgatggcgatcctgctcgcc 1542397
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 175 cggcgagcttcgacaaggagttcg 198 ||||||||||||||||||| |||| Sbjct: 2519732 cggcgagcttcgacaaggatttcg 2519755
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 cgatcctgctcgcctggtgc 164 |||||||||||||||||||| Sbjct: 1726715 cgatcctgctcgcctggtgc 1726734
>gb|AY129331.1| Mycobacteriophage CJW1, complete genome Length = 75931 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gtgctggcgatcctgctcgc 157 |||||||||||||||||||| Sbjct: 796 gtgctggcgatcctgctcgc 815
>gb|AF232237.1|AF232237 Agrobacterium tumefaciens SAICAR synthetase (purC) gene, partial cds; and TetR family bacterial regulatory protein (ameR), membrane fusion protein (ameA), multidrug efflux transporter RND family protein (ameB), and outer membrane protein (ameC) genes, complete cds Length = 7277 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 175 cggcgagcttcgacaaggagttcg 198 ||||||||||||||||||| |||| Sbjct: 119 cggcgagcttcgacaaggatttcg 142
>dbj|AB196976.1| Sagittaria pygmaea SpXTH3 mRNA for xyloglucan endotransglucosylase/hydrolase, complete cds Length = 1273 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 tggggcgacgggcgtggcaagatc 230 ||||||||||| |||||||||||| Sbjct: 257 tggggcgacggccgtggcaagatc 280
>gb|AF165214.1|AF165214 Bacteriophage D3, complete genome Length = 56425 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 ggtgctggcgatcctgctcg 156 |||||||||||||||||||| Sbjct: 54849 ggtgctggcgatcctgctcg 54868
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 tgctggcgatcctgctcgcc 158 |||||||||||||||||||| Sbjct: 925869 tgctggcgatcctgctcgcc 925888
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 ctgacgctggcgctggacaa 268 |||||||||||||||||||| Sbjct: 1832811 ctgacgctggcgctggacaa 1832792
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 gctggcgatcctgctcgcct 159 |||||||||||||||||||| Sbjct: 5519571 gctggcgatcctgctcgcct 5519590
>gb|AC108437.14| Mus musculus chromosome 13, clone RP23-207N7, complete sequence Length = 194800 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 tgaacaatggtcagctcctg 251 |||||||||||||||||||| Sbjct: 38279 tgaacaatggtcagctcctg 38298
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 3.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 131 ggtgtcggtgctggcgatcctgctcgcc 158 |||| ||||| ||||||||||||||||| Sbjct: 3230785 ggtgccggtgatggcgatcctgctcgcc 3230758
>gb|AC005828.1|AC005828 Homo sapiens chromosome 17, clone hRPK.269_G_24, complete sequence Length = 163685 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 cccttccagcttttcatcct 36 |||||||||||||||||||| Sbjct: 111620 cccttccagcttttcatcct 111639
>gb|AC145743.4| Mus musculus BAC clone RP24-171K11 from 3, complete sequence Length = 174136 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 cttttcatccttctcatcaa 45 |||||||||||||||||||| Sbjct: 126267 cttttcatccttctcatcaa 126248 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,355,912 Number of Sequences: 3902068 Number of extensions: 2355912 Number of successful extensions: 47482 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46791 Number of HSP's gapped (non-prelim): 687 length of query: 295 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 273 effective length of database: 17,147,199,772 effective search space: 4681185537756 effective search space used: 4681185537756 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
