>PSAH_HORVU (P20143) Photosystem I reaction center subunit VI, chloroplast|
           precursor (PSI-H) (Light-harvesting complex I 11 kDa
           protein)
          Length = 143

 Score =  152 bits (385), Expect = 2e-37
 Identities = 82/121 (67%), Positives = 82/121 (67%)
 Frame = +2

Query: 53  MASLVAVQPAAVKGLSGSSISGRKLXXXXXXXXXXXXXXXXXXXXXXXKYGEKSVYFDLD 232
           MASLVAVQPAAVKGLSGSSISGRKL                       KYGEKSVYFDLD
Sbjct: 1   MASLVAVQPAAVKGLSGSSISGRKLAVRPSSAAVSRSTRRARGAAVVAKYGEKSVYFDLD 60

Query: 233 DIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFT*RXXXXXXXXXXXXXXVAYVSASA 412
           DIANTTGQWDLYGSDA SPYNGLQSKFFNTFAAPFT R              VAYVSASA
Sbjct: 61  DIANTTGQWDLYGSDAPSPYNGLQSKFFNTFAAPFTKRGLLLKFLLIGGGSLVAYVSASA 120

Query: 413 S 415
           S
Sbjct: 121 S 121

>PSAH_ORYSA (P22181) Photosystem I reaction center subunit VI, chloroplast|
           precursor (PSI-H) (Light-harvesting complex I 11 kDa
           protein) (GOS5 protein)
          Length = 142

 Score =  130 bits (328), Expect = 9e-31
 Identities = 74/121 (61%), Positives = 76/121 (62%)
 Frame = +2

Query: 53  MASLVAVQPAAVKGLSGSSISGRKLXXXXXXXXXXXXXXXXXXXXXXXKYGEKSVYFDLD 232
           MASLVAVQP AVKGL+GSSISGRKL                       KYGEKSVYFDL+
Sbjct: 1   MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRAAVVA-KYGEKSVYFDLE 59

Query: 233 DIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFT*RXXXXXXXXXXXXXXVAYVSASA 412
           DI NTTGQWDLY SDA SPYN LQSKFF TFA PFT R              VAYVSASA
Sbjct: 60  DIGNTTGQWDLYASDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASA 119

Query: 413 S 415
           S
Sbjct: 120 S 120

>PSAH_MAIZE (O65101) Photosystem I reaction center subunit VI, chloroplast|
           precursor (PSI-H) (Light-harvesting complex I 11 kDa
           protein)
          Length = 142

 Score =  127 bits (318), Expect = 1e-29
 Identities = 72/123 (58%), Positives = 78/123 (63%), Gaps = 2/123 (1%)
 Frame = +2

Query: 53  MASL--VAVQPAAVKGLSGSSISGRKLXXXXXXXXXXXXXXXXXXXXXXXKYGEKSVYFD 226
           MASL  V+V+P A+KGL+GSSISGRKL                       KYG+KSVYFD
Sbjct: 1   MASLAAVSVKPVAIKGLAGSSISGRKLAVARPSARSIRRPRAAAVVA---KYGDKSVYFD 57

Query: 227 LDDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFT*RXXXXXXXXXXXXXXVAYVSA 406
           LDDI NTTGQWDLYGSDA SPYN LQSKFF TFAAPFT R              +AYVSA
Sbjct: 58  LDDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLLLGGGSLLAYVSA 117

Query: 407 SAS 415
           SAS
Sbjct: 118 SAS 120

>PSAH_SPIOL (P22179) Photosystem I reaction center subunit VI, chloroplast|
           precursor (PSI-H) (Light-harvesting complex I 11 kDa
           protein)
          Length = 144

 Score =  119 bits (299), Expect = 2e-27
 Identities = 64/121 (52%), Positives = 75/121 (61%)
 Frame = +2

Query: 50  AMASLVAVQPAAVKGLSGSSISGRKLXXXXXXXXXXXXXXXXXXXXXXXKYGEKSVYFDL 229
           ++A+L AVQP  +KGL+GSSI+G KL                       KYG+KSVYFDL
Sbjct: 3   SLATLAAVQPTTLKGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVA--KYGDKSVYFDL 60

Query: 230 DDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFT*RXXXXXXXXXXXXXXVAYVSAS 409
           +DIANTTGQWD+YGSDA SPYN LQSKFF TFAAPFT R              + YVSA+
Sbjct: 61  EDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSAN 120

Query: 410 A 412
           A
Sbjct: 121 A 121

>PSAH_BRARA (O04006) Photosystem I reaction center subunit VI, chloroplast|
           precursor (PSI-H) (Light-harvesting complex I 11 kDa
           protein)
          Length = 145

 Score =  114 bits (285), Expect = 9e-26
 Identities = 63/123 (51%), Positives = 75/123 (60%), Gaps = 1/123 (0%)
 Frame = +2

Query: 50  AMASLVAVQP-AAVKGLSGSSISGRKLXXXXXXXXXXXXXXXXXXXXXXXKYGEKSVYFD 226
           + A++ AVQP +AVKGL GSS++G KL                       KYG+KSVYFD
Sbjct: 3   SFATIAAVQPYSAVKGLGGSSLTGAKLFIKPSRQSFKPKSTRAGAVVA--KYGDKSVYFD 60

Query: 227 LDDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFT*RXXXXXXXXXXXXXXVAYVSA 406
           L+D+ NTTGQWDLYGSDA SPYN LQSKFF TFAAPFT R              + YVSA
Sbjct: 61  LEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 407 SAS 415
           S++
Sbjct: 121 SST 123

>PSAH2_ARATH (Q9SUI6) Photosystem I reaction center subunit VI-2, chloroplast|
           precursor (PSI-H1)
          Length = 145

 Score =  114 bits (284), Expect = 1e-25
 Identities = 62/123 (50%), Positives = 75/123 (60%), Gaps = 1/123 (0%)
 Frame = +2

Query: 50  AMASLVAVQP-AAVKGLSGSSISGRKLXXXXXXXXXXXXXXXXXXXXXXXKYGEKSVYFD 226
           + A++ AVQP AAVKGL GSS++G KL                       KYG+KSVYFD
Sbjct: 3   SFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVA--KYGDKSVYFD 60

Query: 227 LDDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFT*RXXXXXXXXXXXXXXVAYVSA 406
           L+D+ NTTGQWD+YGSDA SPYN LQSKFF TFAAPFT R              + YVSA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 407 SAS 415
           +++
Sbjct: 121 NST 123

>PSAH1_ARATH (Q9SUI7) Photosystem I reaction center subunit VI-1, chloroplast|
           precursor (PSI-H1)
          Length = 145

 Score =  111 bits (277), Expect = 8e-25
 Identities = 60/123 (48%), Positives = 76/123 (61%), Gaps = 1/123 (0%)
 Frame = +2

Query: 50  AMASLVAVQP-AAVKGLSGSSISGRKLXXXXXXXXXXXXXXXXXXXXXXXKYGEKSVYFD 226
           ++A++ AV+P AA+KGL GSS++G KL                       KYG+KSVYFD
Sbjct: 3   SLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVA--KYGDKSVYFD 60

Query: 227 LDDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFT*RXXXXXXXXXXXXXXVAYVSA 406
           L+D+ NTTGQWD+YGSDA SPYN LQSKFF TFAAPFT R              + YVSA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 407 SAS 415
           +++
Sbjct: 121 TST 123

>PSAH_PEA (P20121) Photosystem I reaction center subunit VI (PSI-H)|
           (Light-harvesting complex I 11 kDa protein) (Fragment)
          Length = 36

 Score = 69.7 bits (169), Expect = 3e-12
 Identities = 30/36 (83%), Positives = 33/36 (91%)
 Frame = +2

Query: 197 KYGEKSVYFDLDDIANTTGQWDLYGSDAASPYNGLQ 304
           KYG+KSVYFDL+DI NTTGQWDLYGSDA SPY+ LQ
Sbjct: 1   KYGDKSVYFDLEDIGNTTGQWDLYGSDAPSPYSXLQ 36

>PSAH_CHLRE (P13352) Photosystem I reaction center subunit VI, chloroplast|
           precursor (PSI-H) (Light-harvesting complex I 11 kDa
           protein) (P28 protein)
          Length = 130

 Score = 55.1 bits (131), Expect = 7e-08
 Identities = 24/40 (60%), Positives = 27/40 (67%)
 Frame = +2

Query: 197 KYGEKSVYFDLDDIANTTGQWDLYGSDAASPYNGLQSKFF 316
           KYGE S YFDL D+ NTTG WD+YG D    Y   Q+KFF
Sbjct: 31  KYGENSRYFDLQDMENTTGSWDMYGVDEKKRYPDNQAKFF 70

>PSAH_CUCSA (P42050) Photosystem I reaction center subunit VI, chloroplast|
           (PSI-H) (Photosystem I 7.6 kDa protein) (PS I subunit
           9B) (Fragment)
          Length = 24

 Score = 33.1 bits (74), Expect = 0.27
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +2

Query: 200 YGEKSVYFDLDDIANTTGQWDLY 268
           Y +KSVYFDL+D  NT GQ   Y
Sbjct: 2   YXDKSVYFDLEDKGNTXGQXXXY 24

>GP33_BPSP1 (P06226) Gene 33 protein|
          Length = 101

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 224 DLDDIANTTGQWDLYGSDAASPYNGLQSKF 313
           +L+ + N T  +D+Y S+A   + GL++KF
Sbjct: 7   ELEKVRNHTEDYDVYNSEAERTFRGLKAKF 36

>YBGQ_ECOLI (P75750) Hypothetical outer membrane usher protein ybgQ precursor|
          Length = 815

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 242 NTTGQWDLYGSDAASPYNGLQSKFFNTFAA 331
           ++ G+WD+ G+ AAS Y+ + S +  +F A
Sbjct: 614 SSAGEWDISGTYAASDYSSVSSSWSGSFTA 643


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,985,072
Number of Sequences: 219361
Number of extensions: 349537
Number of successful extensions: 1220
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)