ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet53c01 |
|---|---|
| Clone Library Name | barley_pub |
>EPC1_MOUSE (Q8C9X6) Enhancer of polycomb homolog 1| Length = 813 Score = 40.0 bits (92), Expect = 0.002 Identities = 21/67 (31%), Positives = 43/67 (64%) Frame = +3 Query: 3 NPYNVFRPREKAHRLHTRRMQRRENNIQSFEKLRLVRRNLDQAKALMGALIKREETKREV 182 +PY FR R + ++ TR+ R+N+ S+EK+ +RR+L +A ++ + +RE++KRE+ Sbjct: 206 DPYVAFRRRTE--KMQTRK--NRKNDEASYEKMLKLRRDLSRAVTILEMIKRREKSKREL 261 Query: 183 MECEVNL 203 + + + Sbjct: 262 LHLTLEI 268
>EPC1_HUMAN (Q9H2F5) Enhancer of polycomb homolog 1| Length = 836 Score = 40.0 bits (92), Expect = 0.002 Identities = 21/67 (31%), Positives = 43/67 (64%) Frame = +3 Query: 3 NPYNVFRPREKAHRLHTRRMQRRENNIQSFEKLRLVRRNLDQAKALMGALIKREETKREV 182 +PY FR R + ++ TR+ R+N+ S+EK+ +RR+L +A ++ + +RE++KRE+ Sbjct: 206 DPYVAFRRRTE--KMQTRK--NRKNDEASYEKMLKLRRDLSRAVTILEMIKRREKSKREL 261 Query: 183 MECEVNL 203 + + + Sbjct: 262 LHLTLEI 268
>EPL1_KLULA (Q6CIN8) Enhancer of polycomb-like protein 1| Length = 806 Score = 38.5 bits (88), Expect = 0.004 Identities = 26/75 (34%), Positives = 40/75 (53%) Frame = +3 Query: 3 NPYNVFRPREKAHRLHTRRMQRRENNIQSFEKLRLVRRNLDQAKALMGALIKREETKREV 182 +PY FR RE TRR+ ++Q+ +KLRL+ + L+ K L + KRE EV Sbjct: 276 DPYVCFRRRELRQPRKTRRI-----DVQNSQKLRLLCQQLEYTKDLALTVAKRERAVLEV 330 Query: 183 MECEVNLQRVQMQYK 227 +E E + + + Q K Sbjct: 331 LENEKFVFQARAQLK 345
>EPL1_SCHPO (Q9UU94) Enhancer of polycomb-like protein 1| Length = 557 Score = 37.4 bits (85), Expect = 0.010 Identities = 20/62 (32%), Positives = 37/62 (59%) Frame = +3 Query: 3 NPYNVFRPREKAHRLHTRRMQRRENNIQSFEKLRLVRRNLDQAKALMGALIKREETKREV 182 +PY FR RE TRR ++ QS+++LR +R++++ + L+ + KRE+ K + Sbjct: 229 DPYVCFRRREIRQARKTRR-----SDAQSYDRLRRLRQSMETSLQLLEQVYKREQKKLQA 283 Query: 183 ME 188 +E Sbjct: 284 LE 285
>EPL1_CANGA (Q6FLZ0) Enhancer of polycomb-like protein 1| Length = 821 Score = 34.3 bits (77), Expect = 0.084 Identities = 20/67 (29%), Positives = 38/67 (56%) Frame = +3 Query: 3 NPYNVFRPREKAHRLHTRRMQRRENNIQSFEKLRLVRRNLDQAKALMGALIKREETKREV 182 +PY FR RE H TRR+ +I + +KLR++ + L AK + + +RE+ ++ Sbjct: 309 DPYVCFRRRELRHPRKTRRV-----DILNSQKLRILLKELRHAKDMSLLVAQREQINLQL 363 Query: 183 MECEVNL 203 +E ++ + Sbjct: 364 IEDDLKI 370
>CING_HUMAN (Q9P2M7) Cingulin| Length = 1197 Score = 33.5 bits (75), Expect = 0.14 Identities = 16/55 (29%), Positives = 33/55 (60%) Frame = +3 Query: 57 RMQRRENNIQSFEKLRLVRRNLDQAKALMGALIKREETKREVMECEVNLQRVQMQ 221 RM++ E + EK+ +++R L+QA+A G + E K+E++ + L+ +Q + Sbjct: 587 RMEKEEMEEELGEKIEVLQRELEQARASAGDTRQVEVLKKELLRTQEELKELQAE 641
>EPL1_YEAST (P43572) Enhancer of polycomb-like protein 1| Length = 832 Score = 33.1 bits (74), Expect = 0.19 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Frame = +3 Query: 3 NPYNVFRPREKAHRLHTRRMQRRENNIQSFEKLRLVRRNLDQAKALMGALIKREETKREV 182 +PY FR RE H TRR+ +I + ++LR + + L AK L + KRE Sbjct: 307 DPYVCFRRREVRHPRKTRRI-----DILNSQRLRALHQELKNAKDLALLVAKRENVSLNW 361 Query: 183 MECEVNL--QRVQMQ 221 + E+ + QRV+++ Sbjct: 362 INDELKIFDQRVKIK 376
>CING_MOUSE (P59242) Cingulin| Length = 1191 Score = 33.1 bits (74), Expect = 0.19 Identities = 16/59 (27%), Positives = 36/59 (61%) Frame = +3 Query: 57 RMQRRENNIQSFEKLRLVRRNLDQAKALMGALIKREETKREVMECEVNLQRVQMQYKHE 233 RM++ E + EK+ +++R+L+QA+A + EE K+E+ + L+ +Q + +++ Sbjct: 581 RMEKEEMEEELGEKMEVLQRDLEQARASTRDTHQVEELKKELRRTQGELKELQAEQQNQ 639
>EPL1_ASHGO (Q752Q3) Enhancer of polycomb-like protein 1| Length = 742 Score = 32.7 bits (73), Expect = 0.24 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 9/90 (10%) Frame = +3 Query: 3 NPYNVFRPREKAHRLHTRRMQRRENNIQSFEKLRLVRRNLDQAKALMGALIKREETKREV 182 +PY FR RE TRR+ + Q+ +KLRL+ + L K L + KRE+ ++ Sbjct: 279 DPYFCFRRREVRQTRKTRRV-----DTQNSQKLRLLYQQLQYTKELALLVAKREKMSMDM 333 Query: 183 ---------MECEVNLQRVQMQYKHEAQLV 245 + C++ + + K E +L+ Sbjct: 334 LLRDREIFQLRCDIKTVKRDLGIKGEDELL 363
>CCD41_RAT (Q66H89) Coiled-coil domain-containing protein 41| Length = 692 Score = 32.3 bits (72), Expect = 0.32 Identities = 19/55 (34%), Positives = 29/55 (52%) Frame = +3 Query: 30 EKAHRLHTRRMQRRENNIQSFEKLRLVRRNLDQAKALMGALIKREETKREVMECE 194 E+ H+LH R R E Q+ EKL+ + K+L +KR + K EV+E + Sbjct: 528 EEKHKLHERITDREEKYNQAKEKLQRAATAQKKRKSLHENKLKRLQEKVEVLEAK 582
>CCD41_MOUSE (Q9D5R3) Coiled-coil domain-containing protein 41| Length = 692 Score = 32.3 bits (72), Expect = 0.32 Identities = 19/55 (34%), Positives = 29/55 (52%) Frame = +3 Query: 30 EKAHRLHTRRMQRRENNIQSFEKLRLVRRNLDQAKALMGALIKREETKREVMECE 194 E+ H+LH R R E Q+ EKL+ + K+L +KR + K EV+E + Sbjct: 528 EEKHKLHERITDREEKYNQAKEKLQRAATAQKKRKSLHENKLKRLQEKVEVLEAK 582
>IF2_CORJK (Q4JV51) Translation initiation factor IF-2| Length = 922 Score = 32.0 bits (71), Expect = 0.42 Identities = 22/59 (37%), Positives = 27/59 (45%) Frame = +2 Query: 26 KRKGPSPSYKKDAKTRK*YPVV*KTPPGTAQFGPSKGINGGSD*EGRDKAGGHGM*GQP 202 K+ GP P K R+ P + + P AQ PSK N G GR + G HG G P Sbjct: 210 KKAGPKPGGAKQGGGRRPSPAMMPSHPNPAQM-PSKSDNFGG---GRGRGGRHGGPGGP 264
>CCD41_HUMAN (Q9Y592) Coiled-coil domain-containing protein 41 (NY-REN-58| antigen) Length = 693 Score = 31.6 bits (70), Expect = 0.54 Identities = 19/55 (34%), Positives = 29/55 (52%) Frame = +3 Query: 30 EKAHRLHTRRMQRRENNIQSFEKLRLVRRNLDQAKALMGALIKREETKREVMECE 194 E+ H+LH R R E Q+ EKL+ + K+L +KR + K EV+E + Sbjct: 529 EEKHKLHERITDREEKYNQAKEKLQRAAIAQKKRKSLHENKLKRLQEKVEVLEAK 583
>BRD1_HUMAN (O95696) Bromodomain-containing protein 1 (BR140-like protein)| Length = 1058 Score = 30.8 bits (68), Expect = 0.93 Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 6/64 (9%) Frame = +3 Query: 54 RRMQRRENNIQ---SFEKLRL---VRRNLDQAKALMGALIKREETKREVMECEVNLQRVQ 215 R Q+REN+ + + EKL+ +R +L++A+ L+ L KRE+ KRE +V +++V Sbjct: 504 RSSQQRENDEEMKAAKEKLKYWQRLRHDLERARLLIELLRKREKLKRE----QVKVEQVA 559 Query: 216 MQYK 227 M+ + Sbjct: 560 MELR 563
>RFCS_PYRAB (Q9V2G4) Replication factor C small subunit (RFC small subunit)| (Clamp loader small subunit) (PabRFC small subunit) [Contains: Pab RFC-1 intein; Pab RFC-2 intein] Length = 1437 Score = 29.6 bits (65), Expect = 2.1 Identities = 16/73 (21%), Positives = 34/73 (46%) Frame = +3 Query: 9 YNVFRPREKAHRLHTRRMQRRENNIQSFEKLRLVRRNLDQAKALMGALIKREETKREVME 188 YN E+ H L + + + + +K +++RR L+ + L KRE E++ Sbjct: 766 YNFLEKIEREHNLKPLKEAKTFRELITKDKEKILRRALELRAEIENGLTKREAEILELIS 825 Query: 189 CEVNLQRVQMQYK 227 + + R +++ K Sbjct: 826 ADTWIPRAELEKK 838
>ALM1_SCHPO (Q9UTK5) Abnormal long morphology protein 1 (Sp8)| Length = 1727 Score = 28.9 bits (63), Expect = 3.5 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%) Frame = +3 Query: 105 LVRRNLDQAKALMGALIKREETKREV--MECEVNLQRVQMQYKHEAQLVDDGTTLS 266 LV + L ++ A+ K E + +V +EC+V +Q+ +QY+ + ++ TLS Sbjct: 531 LVNKELANFSSIKEAVSKTLELREKVRALECDVEIQKQTVQYQISNAVKENSNTLS 586
>RAD50_MOUSE (P70388) DNA repair protein RAD50 (EC 3.6.-.-) (mRad50)| Length = 1312 Score = 28.9 bits (63), Expect = 3.5 Identities = 16/83 (19%), Positives = 41/83 (49%), Gaps = 2/83 (2%) Frame = +3 Query: 27 REKAHRLHTRRMQRRENNIQSFEK-LRLVRRNLDQAKALMGALIKREETKREVMECEVNL 203 R+ L + + N +QS + ++ ++ ++++ + L+G ++ EE+ + + + Sbjct: 736 RQSIIDLKEKEIPELRNRLQSVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIM 795 Query: 204 QRVQMQYKH-EAQLVDDGTTLSG 269 +R QM+ K E ++ L G Sbjct: 796 ERFQMELKDVERKIAQQAAKLQG 818
>CLPB_PROMA (Q7VBL0) Chaperone clpB| Length = 864 Score = 28.9 bits (63), Expect = 3.5 Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 4/56 (7%) Frame = +3 Query: 66 RRENNIQSFEKLRLVRRNLDQAKALMGALIKREETKREVME----CEVNLQRVQMQ 221 +RE+N+ S EKL + L++ K+ +L K+ + ++E + + +++VQ+Q Sbjct: 431 KRESNLASQEKLNAIDNGLNELKSKQSSLNKQWQEEKESINTLSFLKEEIEKVQLQ 486
>KI21A_MOUSE (Q9QXL2) Kinesin family member 21A| Length = 1672 Score = 28.9 bits (63), Expect = 3.5 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 9/77 (11%) Frame = +3 Query: 42 RLHTRRMQRRENNIQSFEKLRLVRRNLDQAKALMGALIKREETKREVMECEV-------- 197 RL T + Q E + K+R + DQ +G++ E K + ++CE Sbjct: 672 RLQTLKKQYEEKLMMLQHKIRDTQLERDQVLQNLGSVESYSEEKAKKVKCEYEKKLHAMN 731 Query: 198 -NLQRVQMQYKHEAQLV 245 LQR+Q K A+L+ Sbjct: 732 KELQRLQTAQKEHARLL 748
>UXUA_VIBVY (Q7MBZ9) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)| Length = 395 Score = 28.5 bits (62), Expect = 4.6 Identities = 18/74 (24%), Positives = 38/74 (51%) Frame = +3 Query: 30 EKAHRLHTRRMQRRENNIQSFEKLRLVRRNLDQAKALMGALIKREETKREVMECEVNLQR 209 E+ + H R +R E+N +F + + ++D +M A++ E+ + EV + + Sbjct: 292 ERIYFTHLRSTKREESNPMTFHEAAHLDGDVDMYNVVM-AILDEEQRRAEVGDHRL---- 346 Query: 210 VQMQYKHEAQLVDD 251 + M+ H Q++DD Sbjct: 347 IPMRPDHGHQMLDD 360
>UXUA_VIBVU (Q8D562) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)| Length = 395 Score = 28.5 bits (62), Expect = 4.6 Identities = 18/74 (24%), Positives = 38/74 (51%) Frame = +3 Query: 30 EKAHRLHTRRMQRRENNIQSFEKLRLVRRNLDQAKALMGALIKREETKREVMECEVNLQR 209 E+ + H R +R E+N +F + + ++D +M A++ E+ + EV + + Sbjct: 292 ERIYFTHLRSTKREESNPMTFHEAAHLDGDVDMYNVVM-AILDEEQRRAEVGDHRL---- 346 Query: 210 VQMQYKHEAQLVDD 251 + M+ H Q++DD Sbjct: 347 IPMRPDHGHQMLDD 360
>UXUA_VIBPA (Q87FH9) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)| Length = 395 Score = 28.5 bits (62), Expect = 4.6 Identities = 18/74 (24%), Positives = 38/74 (51%) Frame = +3 Query: 30 EKAHRLHTRRMQRRENNIQSFEKLRLVRRNLDQAKALMGALIKREETKREVMECEVNLQR 209 E+ + H R +R E+N +F + + ++D +M A++ E+ + EV + + Sbjct: 292 ERIYFTHLRSTKREESNPMTFHEAAHLDGDVDMYNVVM-AILDEEQRRAEVGDHRL---- 346 Query: 210 VQMQYKHEAQLVDD 251 + M+ H Q++DD Sbjct: 347 IPMRPDHGHQMLDD 360
>RAD50_RAT (Q9JIL8) DNA repair protein RAD50 (EC 3.6.-.-)| Length = 1312 Score = 28.5 bits (62), Expect = 4.6 Identities = 16/83 (19%), Positives = 41/83 (49%), Gaps = 2/83 (2%) Frame = +3 Query: 27 REKAHRLHTRRMQRRENNIQSFEK-LRLVRRNLDQAKALMGALIKREETKREVMECEVNL 203 R+ L + + N +QS + ++ ++ ++++ + L+G ++ EE+ + + + Sbjct: 736 RQSIIDLKEKEIPELRNRLQSVNRDIQRLKNDIEEQETLLGTVMPEEESAKVCLTDVTIM 795 Query: 204 QRVQMQYKH-EAQLVDDGTTLSG 269 +R QM+ K E ++ L G Sbjct: 796 ERFQMELKDVERKIAQQAAKLQG 818
>APC7_MOUSE (Q9WVM3) Anaphase-promoting complex subunit 7 (APC7) (Cyclosome| subunit 7) (Prediabetic NOD sera-reactive autoantigen) Length = 565 Score = 28.1 bits (61), Expect = 6.0 Identities = 16/50 (32%), Positives = 25/50 (50%) Frame = +3 Query: 45 LHTRRMQRRENNIQSFEKLRLVRRNLDQAKALMGALIKREETKREVMECE 194 +HT R N I S EK L+R N+D +L + ++K V++ E Sbjct: 212 VHTGDNSRAINTICSLEKKSLLRDNVDLLGSLADLYFRAGDSKNSVLKFE 261
>EOMES_HUMAN (O95936) Eomesodermin homolog| Length = 686 Score = 28.1 bits (61), Expect = 6.0 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = +2 Query: 101 PPGTAQFGPSKGINGGSD*EGRDKAGGHG 187 PPG AQFGP G G+ G GG G Sbjct: 202 PPGRAQFGPGAGAGSGA---GGINGGGGG 227
>DDX23_PONPY (Q5RC67) Probable ATP-dependent RNA helicase DDX23 (EC 3.6.1.-)| (DEAD box protein 23) Length = 820 Score = 28.1 bits (61), Expect = 6.0 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 7/57 (12%) Frame = +3 Query: 24 PREKAHRLHTRRMQRRENNIQSFEKLRLVRRNLDQAKAL-------MGALIKREETK 173 P+E+ R RM+R N + E + +R D++K L +G + KR T+ Sbjct: 209 PQERERRERRERMERETNGNEDEEGRQKIREEKDKSKELHAIKERYLGGIKKRRRTR 265
>DDX23_HUMAN (Q9BUQ8) Probable ATP-dependent RNA helicase DDX23 (EC 3.6.1.-)| (DEAD box protein 23) (100 kDa U5 snRNP-specific protein) (U5-100kD) (PRP28 homolog) Length = 820 Score = 28.1 bits (61), Expect = 6.0 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 7/57 (12%) Frame = +3 Query: 24 PREKAHRLHTRRMQRRENNIQSFEKLRLVRRNLDQAKAL-------MGALIKREETK 173 P+E+ R RM+R N + E + +R D++K L +G + KR T+ Sbjct: 209 PQERERRERRERMERETNGNEDEEGRQKIREEKDKSKELHAIKERYLGGIKKRRRTR 265
>POR_CHLRE (Q39617) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 397 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/34 (32%), Positives = 17/34 (50%) Frame = -1 Query: 131 CLVQIAPYQAEFFKRLDIIFSSLHPSCMKAMGLF 30 C++ + F I F+SL+P C+ GLF Sbjct: 278 CMMTVRQMHQRFHDATGITFASLYPGCIAETGLF 311
>FA10_BOVIN (P00743) Coagulation factor X precursor (EC 3.4.21.6) (Stuart| factor) [Contains: Factor X light chain; Factor X heavy chain; Activated factor Xa heavy chain] Length = 492 Score = 28.1 bits (61), Expect = 6.0 Identities = 21/72 (29%), Positives = 36/72 (50%) Frame = +3 Query: 12 NVFRPREKAHRLHTRRMQRRENNIQSFEKLRLVRRNLDQAKALMGALIKREETKREVMEC 191 +VF PR++AHR+ +R +R + ++ ++ L R L++A +L E REV E Sbjct: 23 SVFLPRDQAHRV-LQRARRANSFLEEVKQGNLERECLEEACSL--------EEAREVFED 73 Query: 192 EVNLQRVQMQYK 227 +YK Sbjct: 74 AEQTDEFWSKYK 85
>HTPG_WOLPM (P61189) Chaperone protein htpG (Heat shock protein htpG) (High| temperature protein G) Length = 635 Score = 27.7 bits (60), Expect = 7.9 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +1 Query: 16 YSDQEKRPIAFIQEGCKDEKIISSRLKNSAWYGAIWTKQRH 138 YSD P+ FI E K EK+ S AIWTK ++ Sbjct: 208 YSDHINFPVEFIDEEGKSEKLNSK--------AAIWTKPKN 240
>RAD50_HUMAN (Q92878) DNA repair protein RAD50 (EC 3.6.-.-) (hRAD50)| Length = 1312 Score = 27.7 bits (60), Expect = 7.9 Identities = 15/83 (18%), Positives = 41/83 (49%), Gaps = 2/83 (2%) Frame = +3 Query: 27 REKAHRLHTRRMQRRENNIQSFEK-LRLVRRNLDQAKALMGALIKREETKREVMECEVNL 203 R+ L + + N +Q+ + ++ ++ ++++ + L+G ++ EE+ + + + Sbjct: 736 RQSIIDLKEKEIPELRNKLQNVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIM 795 Query: 204 QRVQMQYKH-EAQLVDDGTTLSG 269 +R QM+ K E ++ L G Sbjct: 796 ERFQMELKDVERKIAQQAAKLQG 818 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,834,634 Number of Sequences: 219361 Number of extensions: 769047 Number of successful extensions: 2251 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 2197 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2250 length of database: 80,573,946 effective HSP length: 70 effective length of database: 65,218,676 effective search space used: 1565248224 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
