| Clone Name | baet53c01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF443599.1| Zea mays enhancer of polycomb-like protein (epc101) mRNA, complete cds Length = 1897 Score = 260 bits (131), Expect = 2e-66 Identities = 227/259 (87%) Strand = Plus / Plus Query: 1 caaacccatataatgtattcagaccaagagaaaaggcccatcgccttcatacaagaagga 60 |||| ||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 1027 caaatccatacaatgtcttcagaccaagagaaaaggctcatcgtcttcatacaagaagga 1086 Query: 61 tgcaaagacgagaaaataatatccagtcgtttgaaaaactccgcctggtacggcgcaatt 120 |||||||| | ||||| |||||||| || || |||||||||||| |||| || ||||| | Sbjct: 1087 tgcaaagaagggaaaacaatatccaatcattcgaaaaactccgcttggtgcgacgcaact 1146 Query: 121 tggaccaagcaaaggcattaatgggggctctgattaagagggaagagacaaagcgggagg 180 |||| |||||||| ||| |||||| ||| ||||||||||||| |||||||||||||||| Sbjct: 1147 tggagcaagcaaaagcactaatggatgctttgattaagagggaggagacaaagcgggagg 1206 Query: 181 tcatggaatgtgaggtcaaccttcagcgcgttcagatgcaatataagcatgaggcccagc 240 |||||| || | || ||||| ||||| ||||||||| ||||||||||||||||||||| Sbjct: 1207 ccatggagtgccaagttaacctgcagcgtgttcagatgaaatataagcatgaggcccagc 1266 Query: 241 ttgttgatgatgggactac 259 ||||||| ||||||||||| Sbjct: 1267 ttgttgaggatgggactac 1285
>dbj|AK072349.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050K09, full insert sequence Length = 3922 Score = 218 bits (110), Expect = 7e-54 Identities = 197/226 (87%) Strand = Plus / Plus Query: 59 gatgcaaagacgagaaaataatatccagtcgtttgaaaaactccgcctggtacggcgcaa 118 ||||||||| |||||||||||||| || || || |||||||| ||| ||||||||||||| Sbjct: 2853 gatgcaaaggcgagaaaataatattcaatcattcgaaaaacttcgcatggtacggcgcaa 2912 Query: 119 tttggaccaagcaaaggcattaatgggggctctgattaagagggaagagacaaagcggga 178 |||||||| ||||||||| | |||| ||| || ||||||||||||||||||| ||||| Sbjct: 2913 cttggaccaggcaaaggcacttatggatgctttggttaagagggaagagacaaaacggga 2972 Query: 179 ggtcatggaatgtgaggtcaaccttcagcgcgttcagatgcaatataagcatgaggccca 238 || ||||||||| ||||||||||||| ||| |||||||| ||||||||||||| ||||| Sbjct: 2973 ggccatggaatgcgaggtcaaccttcgacgcattcagatgaaatataagcatgaagccca 3032 Query: 239 gcttgttgatgatgggactactctatcagggttccagcaagcttct 284 |||||||||||| |||||| | || ||||| |||||||||| |||| Sbjct: 3033 gcttgttgatgaagggactgcactgtcaggcttccagcaagtttct 3078 Score = 85.7 bits (43), Expect = 7e-14 Identities = 55/59 (93%) Strand = Plus / Plus Query: 1 caaacccatataatgtattcagaccaagagaaaaggcccatcgccttcatacaagaagg 59 ||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||| Sbjct: 2635 caaacccttataatgtattcagaccaagagagaaggcacatcgacttcatacaagaagg 2693
>ref|XM_481755.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1362 Score = 153 bits (77), Expect = 4e-34 Identities = 230/281 (81%) Strand = Plus / Plus Query: 1 caaacccatataatgtattcagaccaagagaaaaggcccatcgccttcatacaagaagga 60 |||| ||||| ||||| ||||||||||| || ||||| |||| ||||| ||||| |||| Sbjct: 647 caaatccatacaatgtgttcagaccaagggagaaggcttatcgtcttcacacaaggagga 706 Query: 61 tgcaaagacgagaaaataatatccagtcgtttgaaaaactccgcctggtacggcgcaatt 120 |||||||||||||||||| | |||| || || || |||||||| |||| ||||||||| Sbjct: 707 tgcaaagacgagaaaatagtgtccaatcattcgacaaactccgtgtggtccggcgcaatc 766 Query: 121 tggaccaagcaaaggcattaatgggggctctgattaagagggaagagacaaagcgggagg 180 | || || || |||||| ||||||| || |||||||||||||||||| ||| || ||| Sbjct: 767 tagagcaggctaaggcactaatgggcgcattgattaagagggaagagagaaaacgtgaga 826 Query: 181 tcatggaatgtgaggtcaaccttcagcgcgttcagatgcaatataagcatgaggcccagc 240 ||||| |||||||| |||||| || | |||||| ||| ||||||||||| |||| Sbjct: 827 ctatggagtgtgaggttcaccttcgacgtatccagatgagatacaagcatgaggcacagc 886 Query: 241 ttgttgatgatgggactactctatcagggttccagcaagct 281 || |||||||||||| | |||||||||| ||||||||||| Sbjct: 887 ttattgatgatgggattgctctatcaggcctccagcaagct 927
>dbj|AK110998.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-E08, full insert sequence Length = 2232 Score = 153 bits (77), Expect = 4e-34 Identities = 230/281 (81%) Strand = Plus / Plus Query: 1 caaacccatataatgtattcagaccaagagaaaaggcccatcgccttcatacaagaagga 60 |||| ||||| ||||| ||||||||||| || ||||| |||| ||||| ||||| |||| Sbjct: 945 caaatccatacaatgtgttcagaccaagggagaaggcttatcgtcttcacacaaggagga 1004 Query: 61 tgcaaagacgagaaaataatatccagtcgtttgaaaaactccgcctggtacggcgcaatt 120 |||||||||||||||||| | |||| || || || |||||||| |||| ||||||||| Sbjct: 1005 tgcaaagacgagaaaatagtgtccaatcattcgacaaactccgtgtggtccggcgcaatc 1064 Query: 121 tggaccaagcaaaggcattaatgggggctctgattaagagggaagagacaaagcgggagg 180 | || || || |||||| ||||||| || |||||||||||||||||| ||| || ||| Sbjct: 1065 tagagcaggctaaggcactaatgggcgcattgattaagagggaagagagaaaacgtgaga 1124 Query: 181 tcatggaatgtgaggtcaaccttcagcgcgttcagatgcaatataagcatgaggcccagc 240 ||||| |||||||| |||||| || | |||||| ||| ||||||||||| |||| Sbjct: 1125 ctatggagtgtgaggttcaccttcgacgtatccagatgagatacaagcatgaggcacagc 1184 Query: 241 ttgttgatgatgggactactctatcagggttccagcaagct 281 || |||||||||||| | |||||||||| ||||||||||| Sbjct: 1185 ttattgatgatgggattgctctatcaggcctccagcaagct 1225
>dbj|AK073476.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046G02, full insert sequence Length = 2258 Score = 153 bits (77), Expect = 4e-34 Identities = 230/281 (81%) Strand = Plus / Plus Query: 1 caaacccatataatgtattcagaccaagagaaaaggcccatcgccttcatacaagaagga 60 |||| ||||| ||||| ||||||||||| || ||||| |||| ||||| ||||| |||| Sbjct: 971 caaatccatacaatgtgttcagaccaagggagaaggcttatcgtcttcacacaaggagga 1030 Query: 61 tgcaaagacgagaaaataatatccagtcgtttgaaaaactccgcctggtacggcgcaatt 120 |||||||||||||||||| | |||| || || || |||||||| |||| ||||||||| Sbjct: 1031 tgcaaagacgagaaaatagtgtccaatcattcgacaaactccgtgtggtccggcgcaatc 1090 Query: 121 tggaccaagcaaaggcattaatgggggctctgattaagagggaagagacaaagcgggagg 180 | || || || |||||| ||||||| || |||||||||||||||||| ||| || ||| Sbjct: 1091 tagagcaggctaaggcactaatgggcgcattgattaagagggaagagagaaaacgtgaga 1150 Query: 181 tcatggaatgtgaggtcaaccttcagcgcgttcagatgcaatataagcatgaggcccagc 240 ||||| |||||||| |||||| || | |||||| ||| ||||||||||| |||| Sbjct: 1151 ctatggagtgtgaggttcaccttcgacgtatccagatgagatacaagcatgaggcacagc 1210 Query: 241 ttgttgatgatgggactactctatcagggttccagcaagct 281 || |||||||||||| | |||||||||| ||||||||||| Sbjct: 1211 ttattgatgatgggattgctctatcaggcctccagcaagct 1251
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 85.7 bits (43), Expect = 7e-14 Identities = 55/59 (93%) Strand = Plus / Minus Query: 1 caaacccatataatgtattcagaccaagagaaaaggcccatcgccttcatacaagaagg 59 ||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||| Sbjct: 6201233 caaacccttataatgtattcagaccaagagagaaggcacatcgacttcatacaagaagg 6201175 Score = 85.7 bits (43), Expect = 7e-14 Identities = 64/71 (90%) Strand = Plus / Minus Query: 157 agagggaagagacaaagcgggaggtcatggaatgtgaggtcaaccttcagcgcgttcaga 216 |||||||||||||||| ||||||| ||||||||| ||||||||||||| ||| |||||| Sbjct: 6199866 agagggaagagacaaaacgggaggccatggaatgcgaggtcaaccttcgacgcattcaga 6199807 Query: 217 tgcaatataag 227 || |||||||| Sbjct: 6199806 tgaaatataag 6199796 Score = 61.9 bits (31), Expect = 1e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 226 agcatgaggcccagcttgttgatgatgggactactctatcagggttccagcaagcttct 284 ||||||| ||||||||||||||||| |||||| | || ||||| |||||||||| |||| Sbjct: 6199261 agcatgaagcccagcttgttgatgaagggactgcactgtcaggcttccagcaagtttct 6199203 Score = 48.1 bits (24), Expect = 0.015 Identities = 45/52 (86%) Strand = Plus / Minus Query: 59 gatgcaaagacgagaaaataatatccagtcgtttgaaaaactccgcctggta 110 ||||||||| |||||||||||||| || || || |||||||| ||| ||||| Sbjct: 6201015 gatgcaaaggcgagaaaataatattcaatcattcgaaaaacttcgcatggta 6200964 Score = 46.1 bits (23), Expect = 0.060 Identities = 29/31 (93%) Strand = Plus / Minus Query: 107 ggtacggcgcaatttggaccaagcaaaggca 137 |||||||||||| |||||||| ||||||||| Sbjct: 6200007 ggtacggcgcaacttggaccaggcaaaggca 6199977
>dbj|AP005818.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0009H03 Length = 151685 Score = 85.7 bits (43), Expect = 7e-14 Identities = 55/59 (93%) Strand = Plus / Minus Query: 1 caaacccatataatgtattcagaccaagagaaaaggcccatcgccttcatacaagaagg 59 ||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||| Sbjct: 89133 caaacccttataatgtattcagaccaagagagaaggcacatcgacttcatacaagaagg 89075 Score = 85.7 bits (43), Expect = 7e-14 Identities = 64/71 (90%) Strand = Plus / Minus Query: 157 agagggaagagacaaagcgggaggtcatggaatgtgaggtcaaccttcagcgcgttcaga 216 |||||||||||||||| ||||||| ||||||||| ||||||||||||| ||| |||||| Sbjct: 87766 agagggaagagacaaaacgggaggccatggaatgcgaggtcaaccttcgacgcattcaga 87707 Query: 217 tgcaatataag 227 || |||||||| Sbjct: 87706 tgaaatataag 87696 Score = 61.9 bits (31), Expect = 1e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 226 agcatgaggcccagcttgttgatgatgggactactctatcagggttccagcaagcttct 284 ||||||| ||||||||||||||||| |||||| | || ||||| |||||||||| |||| Sbjct: 87161 agcatgaagcccagcttgttgatgaagggactgcactgtcaggcttccagcaagtttct 87103 Score = 48.1 bits (24), Expect = 0.015 Identities = 45/52 (86%) Strand = Plus / Minus Query: 59 gatgcaaagacgagaaaataatatccagtcgtttgaaaaactccgcctggta 110 ||||||||| |||||||||||||| || || || |||||||| ||| ||||| Sbjct: 88915 gatgcaaaggcgagaaaataatattcaatcattcgaaaaacttcgcatggta 88864 Score = 46.1 bits (23), Expect = 0.060 Identities = 29/31 (93%) Strand = Plus / Minus Query: 107 ggtacggcgcaatttggaccaagcaaaggca 137 |||||||||||| |||||||| ||||||||| Sbjct: 87907 ggtacggcgcaacttggaccaggcaaaggca 87877
>dbj|AP005562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1190_B07 Length = 140200 Score = 85.7 bits (43), Expect = 7e-14 Identities = 55/59 (93%) Strand = Plus / Minus Query: 1 caaacccatataatgtattcagaccaagagaaaaggcccatcgccttcatacaagaagg 59 ||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||| Sbjct: 46516 caaacccttataatgtattcagaccaagagagaaggcacatcgacttcatacaagaagg 46458 Score = 85.7 bits (43), Expect = 7e-14 Identities = 64/71 (90%) Strand = Plus / Minus Query: 157 agagggaagagacaaagcgggaggtcatggaatgtgaggtcaaccttcagcgcgttcaga 216 |||||||||||||||| ||||||| ||||||||| ||||||||||||| ||| |||||| Sbjct: 45149 agagggaagagacaaaacgggaggccatggaatgcgaggtcaaccttcgacgcattcaga 45090 Query: 217 tgcaatataag 227 || |||||||| Sbjct: 45089 tgaaatataag 45079 Score = 61.9 bits (31), Expect = 1e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 226 agcatgaggcccagcttgttgatgatgggactactctatcagggttccagcaagcttct 284 ||||||| ||||||||||||||||| |||||| | || ||||| |||||||||| |||| Sbjct: 44544 agcatgaagcccagcttgttgatgaagggactgcactgtcaggcttccagcaagtttct 44486 Score = 48.1 bits (24), Expect = 0.015 Identities = 45/52 (86%) Strand = Plus / Minus Query: 59 gatgcaaagacgagaaaataatatccagtcgtttgaaaaactccgcctggta 110 ||||||||| |||||||||||||| || || || |||||||| ||| ||||| Sbjct: 46298 gatgcaaaggcgagaaaataatattcaatcattcgaaaaacttcgcatggta 46247 Score = 46.1 bits (23), Expect = 0.060 Identities = 29/31 (93%) Strand = Plus / Minus Query: 107 ggtacggcgcaatttggaccaagcaaaggca 137 |||||||||||| |||||||| ||||||||| Sbjct: 45290 ggtacggcgcaacttggaccaggcaaaggca 45260
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 63.9 bits (32), Expect = 3e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 226 agcatgaggcccagcttgttgatgatgggactactctatcagggttccagcaagct 281 |||||||||| |||||| |||||||||||| | |||||||||| ||||||||||| Sbjct: 15251508 agcatgaggcacagcttattgatgatgggattgctctatcaggcctccagcaagct 15251453 Score = 42.1 bits (21), Expect = 0.94 Identities = 39/45 (86%) Strand = Plus / Minus Query: 59 gatgcaaagacgagaaaataatatccagtcgtttgaaaaactccg 103 |||||||||||||||||||| | |||| || || || |||||||| Sbjct: 15254057 gatgcaaagacgagaaaatagtgtccaatcattcgacaaactccg 15254013
>dbj|AP005491.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0062G05 Length = 152802 Score = 63.9 bits (32), Expect = 3e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 226 agcatgaggcccagcttgttgatgatgggactactctatcagggttccagcaagct 281 |||||||||| |||||| |||||||||||| | |||||||||| ||||||||||| Sbjct: 37139 agcatgaggcacagcttattgatgatgggattgctctatcaggcctccagcaagct 37084 Score = 42.1 bits (21), Expect = 0.94 Identities = 39/45 (86%) Strand = Plus / Minus Query: 59 gatgcaaagacgagaaaataatatccagtcgtttgaaaaactccg 103 |||||||||||||||||||| | |||| || || || |||||||| Sbjct: 39688 gatgcaaagacgagaaaatagtgtccaatcattcgacaaactccg 39644
>dbj|AP004574.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0702G08 Length = 144596 Score = 63.9 bits (32), Expect = 3e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 226 agcatgaggcccagcttgttgatgatgggactactctatcagggttccagcaagct 281 |||||||||| |||||| |||||||||||| | |||||||||| ||||||||||| Sbjct: 99333 agcatgaggcacagcttattgatgatgggattgctctatcaggcctccagcaagct 99278 Score = 42.1 bits (21), Expect = 0.94 Identities = 39/45 (86%) Strand = Plus / Minus Query: 59 gatgcaaagacgagaaaataatatccagtcgtttgaaaaactccg 103 |||||||||||||||||||| | |||| || || || |||||||| Sbjct: 101882 gatgcaaagacgagaaaatagtgtccaatcattcgacaaactccg 101838
>gb|BT013602.1| Lycopersicon esculentum clone 132369R, mRNA sequence Length = 2172 Score = 48.1 bits (24), Expect = 0.015 Identities = 75/92 (81%) Strand = Plus / Plus Query: 6 ccatataatgtattcagaccaagagaaaaggcccatcgccttcatacaagaaggatgcaa 65 |||||||||||||| || ||||| || ||||| || | ||||| ||||| ||||||||| Sbjct: 942 ccatataatgtatttaggccaagggagaaggctcacagacttcacacaaggaggatgcaa 1001 Query: 66 agacgagaaaataatatccagtcgtttgaaaa 97 || | ||||| ||| | ||||| |||||||| Sbjct: 1002 aggagggaaaacaatgtgcagtcatttgaaaa 1033
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 232 aggcccagcttgttgatgatgg 253 |||||||||||||||||||||| Sbjct: 1144334 aggcccagcttgttgatgatgg 1144355
>emb|AL355840.2|CNS05TCV Human chromosome 14 DNA sequence BAC R-382E15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 179937 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Minus Query: 5 cccatataatgtattcagacca 26 |||||||||||||||||||||| Sbjct: 99358 cccatataatgtattcagacca 99337
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 42.1 bits (21), Expect = 0.94 Identities = 21/21 (100%) Strand = Plus / Minus Query: 231 gaggcccagcttgttgatgat 251 ||||||||||||||||||||| Sbjct: 4376870 gaggcccagcttgttgatgat 4376850
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 aggcccagcttgttgatgat 251 |||||||||||||||||||| Sbjct: 1003698 aggcccagcttgttgatgat 1003717
>emb|AL034559.4|PFMAL3P7 Plasmodium falciparum MAL3P7, complete sequence Length = 253305 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 acgagaaaataatatccagt 87 |||||||||||||||||||| Sbjct: 135170 acgagaaaataatatccagt 135189
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 aggcccagcttgttgatgat 251 |||||||||||||||||||| Sbjct: 841011 aggcccagcttgttgatgat 840992
>emb|AJ343007.1|HSA343007 Homo sapiens genomic sequence surrounding NotI site, clone NL1-CP14R Length = 682 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 aagcaaaggcattaatgggg 146 |||||||||||||||||||| Sbjct: 322 aagcaaaggcattaatgggg 303 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,490,437 Number of Sequences: 3902068 Number of extensions: 2490437 Number of successful extensions: 37842 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37723 Number of HSP's gapped (non-prelim): 116 length of query: 284 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 262 effective length of database: 17,147,199,772 effective search space: 4492566340264 effective search space used: 4492566340264 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)