ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet53b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 42 0.29
2gb|AC105744.8| Oryza sativa (japonica cultivar-group) chromosome... 40 1.2
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.2
4gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 1.2
5gb|BT017338.1| Zea mays clone EL01N0321D06.c mRNA sequence 38 4.6
6emb|AL627275.1| Salmonella enterica serovar Typhi (Salmonella ty... 38 4.6
7gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 38 4.6
8emb|AJ492618.1|MRU492618 Mitragyna rubrostipulata ITS1, 5.8S rRN... 38 4.6
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.6
10dbj|AP006070.2| Oryza sativa (japonica cultivar-group) genomic D... 38 4.6
11gb|AY105144.1| Zea mays PCO097109 mRNA sequence 38 4.6
12gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 38 4.6

>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 50      ggactcgccccccatgccgccgtcg 74
               |||||||| ||||||||||||||||
Sbjct: 1298565 ggactcgcgccccatgccgccgtcg 1298589



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>gb|AC105744.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0009C07, complete sequence
          Length = 124266

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    gcatcgcgccgccgccacat 43
             ||||||||||||||||||||
Sbjct: 32242 gcatcgcgccgccgccacat 32223



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 24      gcatcgcgccgccgccacat 43
               ||||||||||||||||||||
Sbjct: 5749157 gcatcgcgccgccgccacat 5749176



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 24      gcatcgcgccgccgccacat 43
               ||||||||||||||||||||
Sbjct: 5750344 gcatcgcgccgccgccacat 5750363



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>gb|BT017338.1| Zea mays clone EL01N0321D06.c mRNA sequence
          Length = 620

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 65  gccgccgtcgtccaagccg 83
           |||||||||||||||||||
Sbjct: 83  gccgccgtcgtccaagccg 101



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>emb|AL627275.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
             complete chromosome; segment 11/20
          Length = 145050

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 53    ctcgccccccatgccgccgtcgt 75
             ||||||||||||||||| |||||
Sbjct: 53013 ctcgccccccatgccgctgtcgt 53035



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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 21      atcgcatcgcgccgccgcc 39
               |||||||||||||||||||
Sbjct: 1223241 atcgcatcgcgccgccgcc 1223259



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>emb|AJ492618.1|MRU492618 Mitragyna rubrostipulata ITS1, 5.8S rRNA gene and ITS2, clone MIT11
          Length = 608

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 23  cgcatcgcgccgccgccac 41
           |||||||||||||||||||
Sbjct: 390 cgcatcgcgccgccgccac 408



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 19       taatcgcatcgcgccgccg 37
                |||||||||||||||||||
Sbjct: 22193700 taatcgcatcgcgccgccg 22193682



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>dbj|AP006070.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1342F01
          Length = 153287

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 19    taatcgcatcgcgccgccg 37
             |||||||||||||||||||
Sbjct: 89544 taatcgcatcgcgccgccg 89526



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>gb|AY105144.1| Zea mays PCO097109 mRNA sequence
          Length = 682

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 65  gccgccgtcgtccaagccg 83
           |||||||||||||||||||
Sbjct: 164 gccgccgtcgtccaagccg 182



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>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 53     ctcgccccccatgccgccgtcgt 75
              ||||||||||||||||| |||||
Sbjct: 394836 ctcgccccccatgccgctgtcgt 394814


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 588,428
Number of Sequences: 3902068
Number of extensions: 588428
Number of successful extensions: 41122
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40633
Number of HSP's gapped (non-prelim): 489
length of query: 103
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 82
effective length of database: 17,151,101,840
effective search space: 1406390350880
effective search space used: 1406390350880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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