Clone Information

BLAST Search Result

Clone Name	baet52h12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	TRIPC_HUMAN (Q14669) Thyroid receptor-interacting protein 12 (TR...	52	4e-07
2	UPL2_ARATH (Q8H0T4) E3 ubiquitin protein ligase UPL2 (EC 6.3.2.-...	48	7e-06
3	UPL1_ARATH (Q8GY23) E3 ubiquitin protein ligase UPL1 (EC 6.3.2.-...	48	7e-06
4	HECD1_HUMAN (Q9ULT8) E3 ubiquitin-protein ligase HECTD1 (HECT do...	47	9e-06
5	TOM1_NEUCR (Q9P4Z1) E3 ubiquitin protein ligase TOM1-like protei...	46	2e-05
6	HUWE1_RAT (P51593) HECT, UBA and WWE domain-containing protein 1...	44	1e-04
7	HUWE1_MOUSE (Q7TMY8) HECT, UBA and WWE domain-containing protein...	44	1e-04
8	HUWE1_HUMAN (Q7Z6Z7) HECT, UBA and WWE domain-containing protein...	44	1e-04
9	PTR1_SCHPO (O13834) E3 ubiquitin protein ligase ptr1 (EC 6.3.2.-...	44	1e-04
10	ITCH_HUMAN (Q96J02) Itchy homolog E3 ubiquitin protein ligase (E...	42	3e-04
11	ITCH_MOUSE (Q8C863) Itchy E3 ubiquitin protein ligase (EC 6.3.2.-)	42	3e-04
12	NEDD4_DROME (Q9VVI3) E3 ubiquitin-protein ligase Nedd-4 (EC 6.3....	41	9e-04
13	NED4L_PONPY (Q5RBF2) E3 ubiquitin-protein ligase NEDD4-like prot...	40	0.002
14	NED4L_MOUSE (Q8CFI0) E3 ubiquitin-protein ligase NEDD4-like prot...	40	0.002
15	NED4L_HUMAN (Q96PU5) E3 ubiquitin-protein ligase NEDD4-like prot...	40	0.002
16	WWP1_HUMAN (Q9H0M0) NEDD4-like E3 ubiquitin-protein ligase WWP1 ...	39	0.002
17	WWP1_MOUSE (Q8BZZ3) NEDD4-like E3 ubiquitin-protein ligase WWP1 ...	39	0.002
18	WWP2_MOUSE (Q9DBH0) NEDD4-like E3 ubiquitin-protein ligase WWP2 ...	39	0.003
19	WWP2_HUMAN (O00308) NEDD4-like E3 ubiquitin-protein ligase WWP2 ...	39	0.003
20	PUB1_SCHPO (Q92462) E3 ubiquitin--protein ligase pub1 (EC 6.3.2.-)	39	0.003
21	NEDD4_HUMAN (P46934) E3 ubiquitin-protein ligase NEDD4 (EC 6.3.2.-)	39	0.004
22	SUDX_DROME (Q9Y0H4) E3 ubiquitin-protein ligase suppressor of de...	38	0.006
23	NEDD4_RAT (Q62940) E3 ubiquitin-protein ligase NEDD4 (EC 6.3.2.-)	38	0.007
24	NEDD4_MOUSE (P46935) E3 ubiquitin-protein ligase NEDD4 (EC 6.3.2...	38	0.007
25	PUB3_SCHPO (O14326) E3 ubiquitin--protein ligase pub3 (EC 6.3.2.-)	37	0.009
26	SMUF1_XENLA (Q9PUN2) Smad ubiquitination regulatory factor 1 (EC...	37	0.012
27	SMUF1_MOUSE (Q9CUN6) Smad ubiquitination regulatory factor 1 (EC...	37	0.012
28	SMUF1_HUMAN (Q9HCE7) Smad ubiquitination regulatory factor 1 (EC...	37	0.012
29	PUB2_SCHPO (Q9UTG2) E3 ubiquitin--protein ligase pub2 (EC 6.3.2.-)	35	0.047
30	SMUF1_DROME (Q9V853) E3 ubiquitin-protein ligase Smurf1 (EC 6.3....	35	0.047
31	SMUF2_HUMAN (Q9HAU4) Smad ubiquitination regulatory factor 2 (EC...	35	0.062
32	RSP5_YEAST (P39940) E3 ubiquitin--protein ligase RSP5 (EC 6.3.2.-)	33	0.14
33	UFD4_YEAST (P33202) Ubiquitin fusion degradation protein 4 (UB f...	33	0.14
34	HUL4_ASHGO (Q757T0) Probable ubiquitin-protein ligase HUL4 (EC 6...	33	0.23
35	HYD_DROME (P51592) Ubiquitin--protein ligase hyd (EC 6.3.2.-) (P...	32	0.31
36	UBE3C_MOUSE (Q80U95) Ubiquitin-protein ligase E3C (EC 6.3.2.-)	30	1.2
37	UBE3C_HUMAN (Q15386) Ubiquitin-protein ligase E3C (EC 6.3.2.-)	30	1.2
38	IWS1A_XENLA (Q6DE96) IWS1-like protein A	30	1.5
39	RPOA_EAVBU (P19811) Replicase polyprotein 1ab (ORF1ab polyprotei...	29	3.4
40	MSC3_YEAST (Q05812) Meiotic sister-chromatid recombination prote...	29	3.4
41	HUL4_YEAST (P40985) Probable ubiquitin-protein ligase HUL4 (EC 6...	28	4.4
42	EDD1_MOUSE (Q80TP3) Ubiquitin-protein ligase EDD1 (EC 6.3.2.-) (...	28	4.4
43	EDD1_HUMAN (O95071) Ubiquitin-protein ligase EDD1 (EC 6.3.2.-) (...	28	4.4
44	PTH_THET8 (Q5SHZ2) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)	28	4.4
45	PTH_THET2 (Q72IA8) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)	28	4.4
46	EDD1_RAT (Q62671) Ubiquitin-protein ligase EDD1 (EC 6.3.2.-) (Hy...	28	4.4
47	YM8F_YEAST (Q03508) Hypothetical 54.1 kDa protein in TPS3-IPP2 i...	28	7.5
48	ARHG1_RAT (Q9Z1I6) Rho guanine nucleotide exchange factor 1 (Lbc...	27	9.8
49	ARP4_NEUCR (Q7SHR0) Actin-like protein arp-4	27	9.8
50	OCLN_XENLA (Q9PUN1) Occludin	27	9.8
51	ZAN_PIG (Q28983) Zonadhesin precursor	27	9.8
52	ARHG1_MOUSE (Q61210) Rho guanine nucleotide exchange factor 1 (L...	27	9.8
53	ARHG1_HUMAN (Q92888) Rho guanine nucleotide exchange factor 1 (p...	27	9.8

>TRIPC_HUMAN (Q14669) Thyroid receptor-interacting protein 12 (TRIP12)|
          Length = 1992

 Score = 52.0 bits (123), Expect = 4e-07
 Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
 Frame = +3

Query: 69   SEDARNLIQAPLGLFPRPWPSNVDTSEGSRFLKVVEYFRLVGRVVAKVLQDGRLLDLPLS 248
            S++    IQ   GLF  P+     T++ +   KV   FR +G+++AK + D RL+DLPL 
Sbjct: 1663 SQEGTKYIQNLQGLFALPFGR---TAKPAHIAKVKMKFRFLGKLMAKAIMDFRLVDLPLG 1719

Query: 249  TAFYKLILGQEL-----DLFDI 299
              FYK +L QE      DLFDI
Sbjct: 1720 LPFYKWMLRQETSLTSHDLFDI 1741

to top

>UPL2_ARATH (Q8H0T4) E3 ubiquitin protein ligase UPL2 (EC 6.3.2.-)|
            (Ubiquitin-protein ligase 2)
          Length = 3658

 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 23/49 (46%), Positives = 34/49 (69%)
 Frame = +3

Query: 171  VEYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFDAE 317
            + YF+ VGR+VAK L DG+LLD+  + +FYK ILG ++   DI + D +
Sbjct: 3382 LSYFKFVGRMVAKALFDGQLLDVYFTRSFYKHILGVKVTYHDIEAVDPD 3430

to top

>UPL1_ARATH (Q8GY23) E3 ubiquitin protein ligase UPL1 (EC 6.3.2.-)|
            (Ubiquitin-protein ligase 1)
          Length = 3684

 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 23/49 (46%), Positives = 34/49 (69%)
 Frame = +3

Query: 171  VEYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFDAE 317
            + YF+ VGR+VAK L DG+LLD+  + +FYK ILG ++   DI + D +
Sbjct: 3405 LSYFKFVGRMVAKALFDGQLLDVYFTRSFYKHILGVKVTYHDIEAVDPD 3453

to top

>HECD1_HUMAN (Q9ULT8) E3 ubiquitin-protein ligase HECTD1 (HECT domain-containing|
            protein 1) (E3 ligase for inhibin receptor) (EULIR)
          Length = 2612

 Score = 47.4 bits (111), Expect = 9e-06
 Identities = 23/60 (38%), Positives = 36/60 (60%)
 Frame = +3

Query: 90   IQAPLGLFPRPWPSNVDTSEGSRFLKVVEYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLI 269
            +Q   GLF  P+P + D  E     ++ + F  +G  +AK +QD RL+DLP+S  F+KL+
Sbjct: 2222 VQRSCGLFTAPFPQDSDELE-----RITKLFHFLGIFLAKCIQDNRLVDLPISKPFFKLM 2276

to top

>TOM1_NEUCR (Q9P4Z1) E3 ubiquitin protein ligase TOM1-like protein (EC 6.3.2.-)|
          Length = 4065

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 20/47 (42%), Positives = 32/47 (68%)
 Frame = +3

Query: 177  YFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFDAE 317
            +F+ +GR++ K L +GRLL+   S A YK ILG+ + + D+ SFD +
Sbjct: 3798 FFKFIGRIIGKALYEGRLLECYFSRAVYKRILGKPVSVKDMESFDPD 3844

to top

>HUWE1_RAT (P51593) HECT, UBA and WWE domain-containing protein 1 (EC 6.3.2.-)|
           (E3 ubiquitin protein ligase URE-B1) (Upstream
           regulatory element-binding protein 1) (Fragment)
          Length = 322

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 21/47 (44%), Positives = 31/47 (65%)
 Frame = +3

Query: 171 VEYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFD 311
           + YF+ VGR+VAK + D RLL+   + +FYK ILG+ +   D+ S D
Sbjct: 52  LSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESED 98

to top

>HUWE1_MOUSE (Q7TMY8) HECT, UBA and WWE domain-containing protein 1 (EC 6.3.2.-)|
            (E3 ubiquitin protein ligase URE-B1) (E3Histone)
          Length = 4377

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 21/47 (44%), Positives = 31/47 (65%)
 Frame = +3

Query: 171  VEYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFD 311
            + YF+ VGR+VAK + D RLL+   + +FYK ILG+ +   D+ S D
Sbjct: 4107 LSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESED 4153

to top

>HUWE1_HUMAN (Q7Z6Z7) HECT, UBA and WWE domain-containing protein 1 (EC 6.3.2.-)|
            (E3 ubiquitin protein ligase URE-B1) (Mcl-1 ubiquitin
            ligase E3) (Mule) (ARF-binding protein 1) (ARF-BP1)
          Length = 4374

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 21/47 (44%), Positives = 31/47 (65%)
 Frame = +3

Query: 171  VEYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFD 311
            + YF+ VGR+VAK + D RLL+   + +FYK ILG+ +   D+ S D
Sbjct: 4104 LSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESED 4150

to top

>PTR1_SCHPO (O13834) E3 ubiquitin protein ligase ptr1 (EC 6.3.2.-) (Poly(A)+ RNA|
            transport protein 1)
          Length = 3227

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 20/49 (40%), Positives = 30/49 (61%)
 Frame = +3

Query: 171  VEYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFDAE 317
            + +F+  GR++ K L DGRLLD   S A YK +L + + + DI S D +
Sbjct: 2958 LSFFKFTGRIIGKALYDGRLLDCHFSRAVYKHMLHRSVSVKDIESLDPD 3006

to top

>ITCH_HUMAN (Q96J02) Itchy homolog E3 ubiquitin protein ligase (EC 6.3.2.-)|
           (Itch) (Atrophin-1-interacting protein 4) (AIP4)
           (NFE2-associated polypeptide 1) (NAPP1)
          Length = 903

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 20/49 (40%), Positives = 29/49 (59%)
 Frame = +3

Query: 171 VEYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFDAE 317
           ++YFR +GR +A  L  G+ +D   S  FYK IL + + L D+ S D E
Sbjct: 635 LKYFRFIGRFIAMALFHGKFIDTGFSLPFYKRILNKPVGLKDLESIDPE 683

to top

>ITCH_MOUSE (Q8C863) Itchy E3 ubiquitin protein ligase (EC 6.3.2.-)|
          Length = 864

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 20/49 (40%), Positives = 29/49 (59%)
 Frame = +3

Query: 171 VEYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFDAE 317
           ++YFR +GR +A  L  G+ +D   S  FYK IL + + L D+ S D E
Sbjct: 596 LKYFRFIGRFIAMALFHGKFIDTGFSLPFYKRILNKPVGLKDLESIDPE 644

to top

>NEDD4_DROME (Q9VVI3) E3 ubiquitin-protein ligase Nedd-4 (EC 6.3.2.-) (DNedd4)|
          Length = 1007

 Score = 40.8 bits (94), Expect = 9e-04
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = +3

Query: 171 VEYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFDAE 317
           + YF+ +GR+    +  G+LLD      FYK++L + +DL D+ S D E
Sbjct: 739 LSYFKFIGRIAGMAVYHGKLLDAFFIRPFYKMMLQKPIDLKDMESVDTE 787

to top

>NED4L_PONPY (Q5RBF2) E3 ubiquitin-protein ligase NEDD4-like protein (EC|
           6.3.2.-)
          Length = 959

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 19/49 (38%), Positives = 30/49 (61%)
 Frame = +3

Query: 171 VEYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFDAE 317
           + YF  +GRV    +  G+LLD      FYK++LG+++ L D+ S D+E
Sbjct: 691 LSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSE 739

to top

>NED4L_MOUSE (Q8CFI0) E3 ubiquitin-protein ligase NEDD4-like protein (EC|
           6.3.2.-) (Nedd4-2) (NEDD4.2)
          Length = 1004

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 19/49 (38%), Positives = 30/49 (61%)
 Frame = +3

Query: 171 VEYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFDAE 317
           + YF  +GRV    +  G+LLD      FYK++LG+++ L D+ S D+E
Sbjct: 736 LSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSE 784

to top

>NED4L_HUMAN (Q96PU5) E3 ubiquitin-protein ligase NEDD4-like protein (EC|
           6.3.2.-) (Nedd4-2) (NEDD4.2)
          Length = 975

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 19/49 (38%), Positives = 30/49 (61%)
 Frame = +3

Query: 171 VEYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFDAE 317
           + YF  +GRV    +  G+LLD      FYK++LG+++ L D+ S D+E
Sbjct: 707 LSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSE 755

to top

>WWP1_HUMAN (Q9H0M0) NEDD4-like E3 ubiquitin-protein ligase WWP1 (EC 6.3.2.-)|
           (WW domain-containing protein 1) (Atropin-1-interacting
           protein 5) (AIP5)
          Length = 922

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 18/49 (36%), Positives = 28/49 (57%)
 Frame = +3

Query: 171 VEYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFDAE 317
           + YF  +GR +A  L  G+ +D   S  FYK +L ++L + D+ S D E
Sbjct: 654 LSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTE 702

to top

>WWP1_MOUSE (Q8BZZ3) NEDD4-like E3 ubiquitin-protein ligase WWP1 (EC 6.3.2.-)|
           (WW domain-containing protein 1)
          Length = 918

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 18/49 (36%), Positives = 28/49 (57%)
 Frame = +3

Query: 171 VEYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFDAE 317
           + YF  +GR +A  L  G+ +D   S  FYK +L ++L + D+ S D E
Sbjct: 650 LSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTE 698

to top

>WWP2_MOUSE (Q9DBH0) NEDD4-like E3 ubiquitin-protein ligase WWP2 (EC 6.3.2.-)|
           (WW domain-containing protein 2)
          Length = 870

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +3

Query: 177 YFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFDAE 317
           YFR +GR +A  L  G+ +D   +  FYK +L +   L D+ S D E
Sbjct: 604 YFRFIGRFIAMALYHGKFIDTGFTLPFYKRMLNKRPTLKDLESIDPE 650

to top

>WWP2_HUMAN (O00308) NEDD4-like E3 ubiquitin-protein ligase WWP2 (EC 6.3.2.-)|
           (WW domain-containing protein 2) (Atrophin-1-interacting
           protein 2) (AIP2)
          Length = 870

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +3

Query: 177 YFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFDAE 317
           YFR +GR +A  L  G+ +D   +  FYK +L +   L D+ S D E
Sbjct: 604 YFRFIGRFIAMALYHGKFIDTGFTLPFYKRMLNKRPTLKDLESIDPE 650

to top

>PUB1_SCHPO (Q92462) E3 ubiquitin--protein ligase pub1 (EC 6.3.2.-)|
          Length = 767

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +3

Query: 171 VEYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFDAE 317
           + YF+ +GRV+   +   R +D     +FYK+IL +++ L D+ S DAE
Sbjct: 500 LNYFKFIGRVIGLAIFHRRFVDAFFVVSFYKMILQKKVTLQDMESMDAE 548

to top

>NEDD4_HUMAN (P46934) E3 ubiquitin-protein ligase NEDD4 (EC 6.3.2.-)|
          Length = 1000

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = +3

Query: 171 VEYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFDAE 317
           + YF+ +GRV    +  G+LLD      FYK++L + + L D+ S D+E
Sbjct: 732 LSYFKFIGRVAGMAVYHGKLLDGFFIRPFYKMMLHKPITLHDMESVDSE 780

to top

>SUDX_DROME (Q9Y0H4) E3 ubiquitin-protein ligase suppressor of deltex (EC|
           6.3.2.-)
          Length = 949

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = +3

Query: 171 VEYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFDAE 317
           ++YF+ +GR +A  L  GR +    +  FYK +L ++L + DI + D E
Sbjct: 681 LQYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLTIKDIETIDPE 729

to top

>NEDD4_RAT (Q62940) E3 ubiquitin-protein ligase NEDD4 (EC 6.3.2.-)|
          Length = 887

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = +3

Query: 171 VEYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFDAE 317
           + YF+ +GRV    +  G+LLD      FYK++L + + L D+ S D+E
Sbjct: 619 LSYFKFIGRVAGMAVYHGKLLDGFFIRPFYKMMLQKLITLHDMESVDSE 667

to top

>NEDD4_MOUSE (P46935) E3 ubiquitin-protein ligase NEDD4 (EC 6.3.2.-) (Neural|
           precursor cell expressed developmentally down-regulated
           protein 4)
          Length = 887

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = +3

Query: 171 VEYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFDAE 317
           + YF+ +GRV    +  G+LLD      FYK++L + + L D+ S D+E
Sbjct: 619 LSYFKFIGRVAGMAVYHGKLLDGFFIRPFYKMMLQKLITLHDMESVDSE 667

to top

>PUB3_SCHPO (O14326) E3 ubiquitin--protein ligase pub3 (EC 6.3.2.-)|
          Length = 786

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 18/49 (36%), Positives = 28/49 (57%)
 Frame = +3

Query: 171 VEYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFDAE 317
           + YFR +GRV+   +   R LD     + YK +L +++ L D+ S DAE
Sbjct: 519 LNYFRFIGRVIGLAIFHRRFLDAFFVVSLYKKLLRKKVSLADMESIDAE 567

to top

>SMUF1_XENLA (Q9PUN2) Smad ubiquitination regulatory factor 1 (EC 6.3.2.-)|
           (Ubiquitin--protein ligase SMURF1) (Smad-specific E3
           ubiquitin ligase) (xSMURF1)
          Length = 731

 Score = 37.0 bits (84), Expect = 0.012
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +3

Query: 171 VEYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFDAEL 320
           + YF  VGR++   +  G  ++   +  FYK +LG+ + L D+ S D EL
Sbjct: 460 LSYFHFVGRIMGLAVFHGHYINGGFTVPFYKQLLGKPIQLSDLESVDPEL 509

to top

>SMUF1_MOUSE (Q9CUN6) Smad ubiquitination regulatory factor 1 (EC 6.3.2.-)|
           (Ubiquitin--protein ligase SMURF1) (Smad-specific E3
           ubiquitin ligase 1)
          Length = 731

 Score = 37.0 bits (84), Expect = 0.012
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +3

Query: 171 VEYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFDAEL 320
           + YF  VGR++   +  G  ++   +  FYK +LG+ + L D+ S D EL
Sbjct: 460 LSYFHFVGRIMGLAVFHGHYINGGFTVPFYKQLLGKPIQLSDLESVDPEL 509

to top

>SMUF1_HUMAN (Q9HCE7) Smad ubiquitination regulatory factor 1 (EC 6.3.2.-)|
           (Ubiquitin--protein ligase SMURF1) (Smad-specific E3
           ubiquitin ligase 1) (hSMURF1)
          Length = 757

 Score = 37.0 bits (84), Expect = 0.012
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +3

Query: 171 VEYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFDAEL 320
           + YF  VGR++   +  G  ++   +  FYK +LG+ + L D+ S D EL
Sbjct: 486 LSYFHFVGRIMGLAVFHGHYINGGFTVPFYKQLLGKPIQLSDLESVDPEL 535

to top

>PUB2_SCHPO (Q9UTG2) E3 ubiquitin--protein ligase pub2 (EC 6.3.2.-)|
          Length = 671

 Score = 35.0 bits (79), Expect = 0.047
 Identities = 19/45 (42%), Positives = 24/45 (53%)
 Frame = +3

Query: 177 YFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFD 311
           YFR VGRV+   +   R LD+     FYK IL + L L D+   D
Sbjct: 406 YFRFVGRVMGLAIYHRRYLDVQFVLPFYKRILQKPLCLEDVKDVD 450

to top

>SMUF1_DROME (Q9V853) E3 ubiquitin-protein ligase Smurf1 (EC 6.3.2.-) (Smad|
           ubiquitination regulatory factor 1 homolog) (DSmurf)
           (Lethal with a checkpoint kinase protein)
          Length = 1061

 Score = 35.0 bits (79), Expect = 0.047
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +3

Query: 171 VEYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFDAEL 320
           + YF  VGR +   +  G  LD   +T FYK +L + + L DI   D +L
Sbjct: 789 LSYFHFVGRTLGIAVFHGHCLDGGFTTPFYKQLLNKPITLGDIEGVDPDL 838

to top

>SMUF2_HUMAN (Q9HAU4) Smad ubiquitination regulatory factor 2 (EC 6.3.2.-)|
           (Ubiquitin--protein ligase SMURF2) (Smad-specific E3
           ubiquitin ligase 2) (hSMURF2)
          Length = 748

 Score = 34.7 bits (78), Expect = 0.062
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +3

Query: 171 VEYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFDAEL 320
           + YF  VGR++   +  G  +D   +  FYK +LG+ + L D+   D +L
Sbjct: 480 LSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKSITLDDMELVDPDL 529

to top

>RSP5_YEAST (P39940) E3 ubiquitin--protein ligase RSP5 (EC 6.3.2.-)|
          Length = 809

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = +3

Query: 171 VEYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFDAEL 320
           + YF+ +GRVV   +   R LD     A YK++L +++ L D+   DAE+
Sbjct: 542 LNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRKKVVLQDMEGVDAEV 591

to top

>UFD4_YEAST (P33202) Ubiquitin fusion degradation protein 4 (UB fusion protein 4)|
          Length = 1483

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = +3

Query: 108  LFPRPWPSNVDTSEGSRFLKVVEYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLI 269
            LFP P       +  S   KV+E F  +G  VA+ L D R+LD   S  F++L+
Sbjct: 1186 LFPEP------LNPFSNNEKVIELFGYLGTFVARSLLDNRILDFRFSKVFFELL 1233

to top

>HUL4_ASHGO (Q757T0) Probable ubiquitin-protein ligase HUL4 (EC 6.3.2.-) (HECT|
           ubiquitin ligase 4)
          Length = 839

 Score = 32.7 bits (73), Expect = 0.23
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 174 EYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFDAELG 323
           E + L G V+   + +  +LDL    AFYK I G+ L + D +    E G
Sbjct: 570 ELYYLFGVVLGLAIYNSTILDLKFPRAFYKKICGEVLSVNDFLELYPETG 619

to top

>HYD_DROME (P51592) Ubiquitin--protein ligase hyd (EC 6.3.2.-) (Protein|
            hyperplastic discs)
          Length = 2885

 Score = 32.3 bits (72), Expect = 0.31
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +3

Query: 147  EGSRFLKVVEYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFDAEL 320
            +G    + +  FR +GR++   L    LL L L     K ILG+++   D+  FD  L
Sbjct: 2604 QGFASFERINAFRNIGRLIGLCLLQNELLPLFLQRHVLKYILGRKIKFHDLAFFDPAL 2661

to top

>UBE3C_MOUSE (Q80U95) Ubiquitin-protein ligase E3C (EC 6.3.2.-)|
          Length = 1083

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +3

Query: 177 YFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILG--QELDLFDIISFDAEL 320
           ++  +GR++ K L +  L++LP +  F   +LG   ++D+  + S D E+
Sbjct: 817 HYYFLGRMLGKALYENMLVELPFAGFFLSKLLGTSADVDIHHLASLDPEV 866

to top

>UBE3C_HUMAN (Q15386) Ubiquitin-protein ligase E3C (EC 6.3.2.-)|
          Length = 1083

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +3

Query: 177 YFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILG--QELDLFDIISFDAEL 320
           ++  +GR++ K L +  L++LP +  F   +LG   ++D+  + S D E+
Sbjct: 817 HYYFLGRMLGKALYENMLVELPFAGFFLSKLLGTSADVDIHHLASLDPEV 866

to top

>IWS1A_XENLA (Q6DE96) IWS1-like protein A|
          Length = 836

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +3

Query: 3   DKNGVIHA--DSDDDLPAPQELNSSEDARNL 89
           D+  V H+  DS+DD+P  Q+ N SED R++
Sbjct: 131 DEEPVRHSASDSEDDVPRKQQANDSEDERHI 161

to top

>RPOA_EAVBU (P19811) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:|
            Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1
            papain-like cysteine proteinase (EC 3.4.22.-) (PCP); Nsp2
            cysteine proteinase (EC 3.4.22.-) (CP2) (CP);
            Nonstructural protein
          Length = 3175

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
 Frame = +3

Query: 111  FPRPWPSN-------VDTSEGSRFLKVVEYFRLVGRVVAKVLQDGRL 230
            FPRP   N       V TSEG  F+  V YF  V   +A++L  GR+
Sbjct: 2585 FPRPGSGNITVRLPQVGTSEGETFVDEVAYFSPVD--LARILTQGRV 2629

to top

>MSC3_YEAST (Q05812) Meiotic sister-chromatid recombination protein 3|
          Length = 728

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = -1

Query: 301 IMSNKSSSCPSISL*NAVDKGKSKSRPSCKTFATTRPTKRKYSTTLRNLLPSEVSTLEGQ 122
           +  N   S P+ S    + +G + ++PS      T P      + L+  + S  ++  GQ
Sbjct: 575 VTRNAEESFPAAS----ISEGVTTAKPSSNEGVMTNPVVTDSPSPLQQQIDSTTASSNGQ 630

Query: 121 GRGNNPRGA 95
            +GN P  A
Sbjct: 631 SQGNVPTSA 639

to top

>HUL4_YEAST (P40985) Probable ubiquitin-protein ligase HUL4 (EC 6.3.2.-) (HECT|
           ubiquitin ligase 4)
          Length = 892

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +3

Query: 126 PSNVDTSEGSRFLKVVEYFRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFD 296
           P N D S+G      +E + L G V+   + +  +LDL    A YK +  + L   D
Sbjct: 599 PPNFDKSKGKN--SQLELYYLFGVVMGLAIFNSTILDLQFPKALYKKLCSEPLSFED 653

to top

>EDD1_MOUSE (Q80TP3) Ubiquitin-protein ligase EDD1 (EC 6.3.2.-) (Hyperplastic|
            discs protein homolog)
          Length = 2792

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 180  FRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFD 311
            FR +GR++   L    L  + L+    K++LG++++  D   FD
Sbjct: 2522 FRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFD 2565

to top

>EDD1_HUMAN (O95071) Ubiquitin-protein ligase EDD1 (EC 6.3.2.-) (Hyperplastic|
            discs protein homolog) (hHYD) (Progestin-induced protein)
          Length = 2799

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 180  FRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFD 311
            FR +GR++   L    L  + L+    K++LG++++  D   FD
Sbjct: 2529 FRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFD 2572

to top

>PTH_THET8 (Q5SHZ2) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)|
          Length = 183

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 12/66 (18%)
 Frame = +3

Query: 102 LGLFPRP-WPSNVDTSEGSRFLKVVEYFRLVGRVVAKVLQDGRL-----------LDLPL 245
           LGL  RP   + V  +EG  FLK + Y+ L GR VA + +  ++           +DLPL
Sbjct: 29  LGLSFRPRGEALVAEAEGGLFLKPLTYYNLTGRAVAPLARFYKIPPERILVVHDEMDLPL 88

Query: 246 STAFYK 263
               +K
Sbjct: 89  GRIRFK 94

to top

>PTH_THET2 (Q72IA8) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)|
          Length = 183

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 12/66 (18%)
 Frame = +3

Query: 102 LGLFPRP-WPSNVDTSEGSRFLKVVEYFRLVGRVVAKVLQDGRL-----------LDLPL 245
           LGL  RP   + V  +EG  FLK + Y+ L GR VA + +  ++           +DLPL
Sbjct: 29  LGLSFRPRGEALVAEAEGGLFLKPLTYYNLTGRAVAPLARFYKIPPERILVVHDEMDLPL 88

Query: 246 STAFYK 263
               +K
Sbjct: 89  GRIRFK 94

to top

>EDD1_RAT (Q62671) Ubiquitin-protein ligase EDD1 (EC 6.3.2.-) (Hyperplastic|
           discs protein homolog) (100 kDa protein) (Fragment)
          Length = 920

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 180 FRLVGRVVAKVLQDGRLLDLPLSTAFYKLILGQELDLFDIISFD 311
           FR +GR++   L    L  + L+    K++LG++++  D   FD
Sbjct: 650 FRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFD 693

to top

>YM8F_YEAST (Q03508) Hypothetical 54.1 kDa protein in TPS3-IPP2 intergenic|
           region
          Length = 461

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = -1

Query: 208 FATTRPTKRKYSTTLRNLLPSEVSTLEGQGRGNNP 104
           FAT  PT++ Y+  L NLL S  STL   G  N P
Sbjct: 57  FATPGPTEQLYTRELLNLLTS--STLPNGGWWNEP 89

to top

>ARHG1_RAT (Q9Z1I6) Rho guanine nucleotide exchange factor 1 (Lbc's second|
           cousin)
          Length = 919

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -2

Query: 129 KAKGEEIIQEELVSDSGHLRMS*VLEEL 46
           + K +E+I E LV+++ H+RM  VL +L
Sbjct: 412 QVKRQEVISELLVTEAAHVRMLRVLHDL 439

to top

>ARP4_NEUCR (Q7SHR0) Actin-like protein arp-4|
          Length = 469

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = +3

Query: 18  IHADSDDDLPAPQELNSSEDARNLIQAPLGLFP-----RPWPS 131
           I+   D D+P   + N++EDA + ++ PL   P      PW S
Sbjct: 115 INISDDGDVPMEDDGNNNEDATDALEKPLAENPLLMTEAPWNS 157

to top

>OCLN_XENLA (Q9PUN1) Occludin|
          Length = 493

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
 Frame = +3

Query: 6   KNGVIHADSDDDLP-------APQELNSSEDARNLIQAPLGLFPRPWPSNVDTSEG 152
           +N + H  ++++LP       +P+  +SS DA      P     +P  S++DT+EG
Sbjct: 316 QNNISHPIAEEELPLKEDYGMSPRHYSSSSDATTKKAPPKKRPGKPRRSDLDTNEG 371

to top

>ZAN_PIG (Q28983) Zonadhesin precursor|
          Length = 2476

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 226 RPSCKTFATTRPTKRKYSTTLRNLLPSEVSTL 131
           R +  T  TT PT+R  + T+R   P+E +T+
Sbjct: 601 RTTTPTIRTTTPTERTTTPTIRTTTPTERTTI 632

to top

>ARHG1_MOUSE (Q61210) Rho guanine nucleotide exchange factor 1 (Lymphoid blast|
           crisis-like 2) (Lbc's second cousin)
          Length = 920

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -2

Query: 129 KAKGEEIIQEELVSDSGHLRMS*VLEEL 46
           + K +E+I E LV+++ H+RM  VL +L
Sbjct: 413 QVKRQEVISELLVTEAAHVRMLRVLHDL 440

to top

>ARHG1_HUMAN (Q92888) Rho guanine nucleotide exchange factor 1 (p115-RhoGEF)|
           (p115RhoGEF) (115 kDa guanine nucleotide exchange
           factor) (Sub1.5)
          Length = 912

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -2

Query: 129 KAKGEEIIQEELVSDSGHLRMS*VLEEL 46
           + K +E+I E LV+++ H+RM  VL +L
Sbjct: 414 QVKRQEVISELLVTEAAHVRMLRVLHDL 441


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,425,755
Number of Sequences: 219361
Number of extensions: 756234
Number of successful extensions: 2333
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 2265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2331
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result