| Clone Name | baet52h01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK106043.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-E03, full insert sequence Length = 1617 Score = 145 bits (73), Expect = 1e-31 Identities = 174/207 (84%), Gaps = 3/207 (1%) Strand = Plus / Plus Query: 100 ctccatggataggctcgtcgcagccggcattcttgccttcctactgatcgcgtcggtagg 159 |||||||||||||||| |||| | || | |||| |||||| ||||||| || ||||| Sbjct: 71 ctccatggataggctcctcgc---ctgcctccttggcttcctgttgatcgcttcagtagg 127 Query: 160 aagccatgcagctcgtgctccggggcaatactgggagtctgctcttcccaacactcccat 219 ||||||||| ||||| |||||| |||||||||| | || |||||||||||| ||||||| Sbjct: 128 aagccatgccgctcggactccggagcaatactggaaatcagctcttcccaactctcccat 187 Query: 220 gccaagctccctctctcaactcctcgacacgcaagccggaggcacgtcggtgaacgtcgg 279 || ||||| |||||||| || ||| ||| || |||||||||||||||||||||||| Sbjct: 188 cccgagctcgctctctcagcttctcagcactgcaggcggaggcacgtcggtgaacgtcgg 247 Query: 280 ctcgggcggcgtccatgtcgacgcggg 306 | |||||||||||||||||||||||| Sbjct: 248 cgggggcggcgtccatgtcgacgcggg 274
>dbj|AK065358.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013011A15, full insert sequence Length = 1618 Score = 145 bits (73), Expect = 1e-31 Identities = 174/207 (84%), Gaps = 3/207 (1%) Strand = Plus / Plus Query: 100 ctccatggataggctcgtcgcagccggcattcttgccttcctactgatcgcgtcggtagg 159 |||||||||||||||| |||| | || | |||| |||||| ||||||| || ||||| Sbjct: 72 ctccatggataggctcctcgc---ctgcctccttggcttcctgttgatcgcttcagtagg 128 Query: 160 aagccatgcagctcgtgctccggggcaatactgggagtctgctcttcccaacactcccat 219 ||||||||| ||||| |||||| |||||||||| | || |||||||||||| ||||||| Sbjct: 129 aagccatgccgctcggactccggagcaatactggaaatcagctcttcccaactctcccat 188 Query: 220 gccaagctccctctctcaactcctcgacacgcaagccggaggcacgtcggtgaacgtcgg 279 || ||||| |||||||| || ||| ||| || |||||||||||||||||||||||| Sbjct: 189 cccgagctcgctctctcagcttctcagcactgcaggcggaggcacgtcggtgaacgtcgg 248 Query: 280 ctcgggcggcgtccatgtcgacgcggg 306 | |||||||||||||||||||||||| Sbjct: 249 cgggggcggcgtccatgtcgacgcggg 275
>dbj|AK059056.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-F04, full insert sequence Length = 1616 Score = 145 bits (73), Expect = 1e-31 Identities = 174/207 (84%), Gaps = 3/207 (1%) Strand = Plus / Plus Query: 100 ctccatggataggctcgtcgcagccggcattcttgccttcctactgatcgcgtcggtagg 159 |||||||||||||||| |||| | || | |||| |||||| ||||||| || ||||| Sbjct: 63 ctccatggataggctcctcgc---ctgcctccttggcttcctgttgatcgcttcagtagg 119 Query: 160 aagccatgcagctcgtgctccggggcaatactgggagtctgctcttcccaacactcccat 219 ||||||||| ||||| |||||| |||||||||| | || |||||||||||| ||||||| Sbjct: 120 aagccatgccgctcggactccggagcaatactggaaatcagctcttcccaactctcccat 179 Query: 220 gccaagctccctctctcaactcctcgacacgcaagccggaggcacgtcggtgaacgtcgg 279 || ||||| |||||||| || ||| ||| || |||||||||||||||||||||||| Sbjct: 180 cccgagctcgctctctcagcttctcagcactgcaggcggaggcacgtcggtgaacgtcgg 239 Query: 280 ctcgggcggcgtccatgtcgacgcggg 306 | |||||||||||||||||||||||| Sbjct: 240 cgggggcggcgtccatgtcgacgcggg 266
>ref|NM_191551.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1290 Score = 143 bits (72), Expect = 4e-31 Identities = 150/176 (85%) Strand = Plus / Plus Query: 131 cttgccttcctactgatcgcgtcggtaggaagccatgcagctcgtgctccggggcaatac 190 |||| |||||| ||||||| || |||||||||||||| ||||| |||||| ||||||| Sbjct: 25 cttggcttcctgttgatcgcttcagtaggaagccatgccgctcggactccggagcaatac 84 Query: 191 tgggagtctgctcttcccaacactcccatgccaagctccctctctcaactcctcgacacg 250 ||| | || |||||||||||| ||||||| || ||||| |||||||| || ||| ||| Sbjct: 85 tggaaatcagctcttcccaactctcccatcccgagctcgctctctcagcttctcagcact 144 Query: 251 caagccggaggcacgtcggtgaacgtcggctcgggcggcgtccatgtcgacgcggg 306 || ||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 145 gcaggcggaggcacgtcggtgaacgtcggcgggggcggcgtccatgtcgacgcggg 200
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 85.7 bits (43), Expect = 8e-14 Identities = 49/51 (96%) Strand = Plus / Plus Query: 256 cggaggcacgtcggtgaacgtcggctcgggcggcgtccatgtcgacgcggg 306 ||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 30584378 cggaggcacgtcggtgaacgtcggcgggggcggcgtccatgtcgacgcggg 30584428 Score = 81.8 bits (41), Expect = 1e-12 Identities = 80/93 (86%) Strand = Plus / Plus Query: 145 gatcgcgtcggtaggaagccatgcagctcgtgctccggggcaatactgggagtctgctct 204 |||||| || |||||||||||||| ||||| |||||| |||||||||| | || ||||| Sbjct: 30583798 gatcgcttcagtaggaagccatgccgctcggactccggagcaatactggaaatcagctct 30583857 Query: 205 tcccaacactcccatgccaagctccctctctca 237 ||||||| ||||||| || ||||| |||||||| Sbjct: 30583858 tcccaactctcccatcccgagctcgctctctca 30583890
>dbj|AP003309.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0036G09 Length = 124118 Score = 85.7 bits (43), Expect = 8e-14 Identities = 49/51 (96%) Strand = Plus / Plus Query: 256 cggaggcacgtcggtgaacgtcggctcgggcggcgtccatgtcgacgcggg 306 ||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 66982 cggaggcacgtcggtgaacgtcggcgggggcggcgtccatgtcgacgcggg 67032 Score = 81.8 bits (41), Expect = 1e-12 Identities = 80/93 (86%) Strand = Plus / Plus Query: 145 gatcgcgtcggtaggaagccatgcagctcgtgctccggggcaatactgggagtctgctct 204 |||||| || |||||||||||||| ||||| |||||| |||||||||| | || ||||| Sbjct: 66402 gatcgcttcagtaggaagccatgccgctcggactccggagcaatactggaaatcagctct 66461 Query: 205 tcccaacactcccatgccaagctccctctctca 237 ||||||| ||||||| || ||||| |||||||| Sbjct: 66462 tcccaactctcccatcccgagctcgctctctca 66494
>dbj|AP003560.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1060H01 Length = 157987 Score = 85.7 bits (43), Expect = 8e-14 Identities = 49/51 (96%) Strand = Plus / Plus Query: 256 cggaggcacgtcggtgaacgtcggctcgggcggcgtccatgtcgacgcggg 306 ||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 26655 cggaggcacgtcggtgaacgtcggcgggggcggcgtccatgtcgacgcggg 26705 Score = 81.8 bits (41), Expect = 1e-12 Identities = 80/93 (86%) Strand = Plus / Plus Query: 145 gatcgcgtcggtaggaagccatgcagctcgtgctccggggcaatactgggagtctgctct 204 |||||| || |||||||||||||| ||||| |||||| |||||||||| | || ||||| Sbjct: 26075 gatcgcttcagtaggaagccatgccgctcggactccggagcaatactggaaatcagctct 26134 Query: 205 tcccaacactcccatgccaagctccctctctca 237 ||||||| ||||||| || ||||| |||||||| Sbjct: 26135 tcccaactctcccatcccgagctcgctctctca 26167
>emb|AL691513.13| Mouse DNA sequence from clone RP23-451C8 on chromosome X, complete sequence Length = 121936 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 82 gctgccctctgccctgccctcc 103 |||||||||||||||||||||| Sbjct: 19015 gctgccctctgccctgccctcc 19036
>gb|AC157903.3| Mus musculus chromosome 18, clone RP23-341E18, complete sequence Length = 198984 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 87 cctctgccctgccctccatgg 107 ||||||||||||||||||||| Sbjct: 89203 cctctgccctgccctccatgg 89223
>gb|AC134581.5| Mus musculus BAC clone RP24-90L20 from chromosome 8, complete sequence Length = 201483 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 tcctcattgctgccctctgcc 94 ||||||||||||||||||||| Sbjct: 104523 tcctcattgctgccctctgcc 104503
>gb|AC163394.4| Mus musculus chromosome 15, clone RP24-241D13, complete sequence Length = 154751 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 216 ccatgccaagctccctctctc 236 ||||||||||||||||||||| Sbjct: 77707 ccatgccaagctccctctctc 77727
>gb|AC102847.3| Mus musculus, clone RP24-406I1, complete sequence Length = 146259 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 216 ccatgccaagctccctctctc 236 ||||||||||||||||||||| Sbjct: 10116 ccatgccaagctccctctctc 10136
>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29 Length = 303550 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 287 ggcgtccatgtcgacgcgggccatg 311 ||||||||||||| ||||||||||| Sbjct: 275597 ggcgtccatgtcggcgcgggccatg 275621
>gb|AC145332.48| Felis catus clone rp86-207p24, complete sequence Length = 165072 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 84 tgccctctgccctgccctcca 104 ||||||||||||||||||||| Sbjct: 52191 tgccctctgccctgccctcca 52171
>gb|AC103808.2| Homo sapiens chromosome 18, clone RP11-94B19, complete sequence Length = 152722 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 84 tgccctctgccctgccctcca 104 ||||||||||||||||||||| Sbjct: 22839 tgccctctgccctgccctcca 22859
>dbj|AK022038.1| Homo sapiens cDNA FLJ11976 fis, clone HEMBB1001253 Length = 3174 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 tgctgccctctgccctgccct 101 ||||||||||||||||||||| Sbjct: 187 tgctgccctctgccctgccct 167
>gb|AC102162.6| Mus musculus chromosome 18, clone RP23-419P4, complete sequence Length = 194165 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 87 cctctgccctgccctccatgg 107 ||||||||||||||||||||| Sbjct: 97329 cctctgccctgccctccatgg 97309
>gb|AC165090.3| Mus musculus BAC clone RP23-95H4 from chromosome 8, complete sequence Length = 252334 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 ggggcaatactgggagtctg 200 |||||||||||||||||||| Sbjct: 156303 ggggcaatactgggagtctg 156322
>emb|AL162417.23| Human DNA sequence from clone RP11-326L24 on chromosome 9q34.13-34.3 Contains the GTF3C5 gene for general transcription factor IIIC polypeptide 5 63kDa, the CEL gene for carboxyl ester lipase (bile salt-stimulated lipase), the CELP gene for carboxyl ester lipase pseudogene, the RALGDS gene for ral guanine nucleotide dissociation stimulator, the gene for Forssman glycolipid synthetase (FS), three novel genes and six CpG islands, complete sequence Length = 152863 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 tgctgccctctgccctgccc 100 |||||||||||||||||||| Sbjct: 119706 tgctgccctctgccctgccc 119725
>emb|BX640424.1| Bordetella parapertussis strain 12822, complete genome; segment 2/14 Length = 349146 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 gctgccctctgccctgccctccat 105 ||||||||| |||||||||||||| Sbjct: 328111 gctgccctcggccctgccctccat 328088
>gb|AC107623.2| Homo sapiens chromosome 3 clone RP11-648C16, complete sequence Length = 176901 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 tgccgtcagcttcctcattg 82 |||||||||||||||||||| Sbjct: 73263 tgccgtcagcttcctcattg 73244
>gb|AC096970.2| Homo sapiens chromosome 3 clone RP11-321A23, complete sequence Length = 171297 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 tgccgtcagcttcctcattg 82 |||||||||||||||||||| Sbjct: 5190 tgccgtcagcttcctcattg 5209
>gb|AC024560.26| Homo sapiens 3 BAC RP11-496H1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 164595 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 ctgccctctgccctgccctc 102 |||||||||||||||||||| Sbjct: 124562 ctgccctctgccctgccctc 124543
>gb|AC024937.21| Homo sapiens 3 BAC RP11-480A16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 157198 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 ctgccctctgccctgccctc 102 |||||||||||||||||||| Sbjct: 60287 ctgccctctgccctgccctc 60306 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 ctgccctctgccctgccctc 102 |||||||||||||||||||| Sbjct: 771 ctgccctctgccctgccctc 790
>gb|AC124944.8| Homo sapiens 3 BAC RP11-352G9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 121914 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 ctgccctctgccctgccctc 102 |||||||||||||||||||| Sbjct: 1275 ctgccctctgccctgccctc 1256
>gb|AF333038.2| Streptomyces viridochromogenes Avilamycin A biosynthetic gene cluster, complete sequence Length = 59816 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 ggtgaacgtcggctcgggcg 287 |||||||||||||||||||| Sbjct: 42394 ggtgaacgtcggctcgggcg 42413
>gb|AC002319.1|AC002319 Homo sapiens chromosome 9q34, clone 70C11, complete sequence Length = 46305 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 tgctgccctctgccctgccc 100 |||||||||||||||||||| Sbjct: 44281 tgctgccctctgccctgccc 44262
>gb|AC131680.4| Mus musculus BAC clone RP23-346F8 from 8, complete sequence Length = 198162 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 ggggcaatactgggagtctg 200 |||||||||||||||||||| Sbjct: 160771 ggggcaatactgggagtctg 160752
>gb|AC001643.1|AC001643 Genomic sequence from Human 9q34, complete sequence Length = 40203 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 tgctgccctctgccctgccc 100 |||||||||||||||||||| Sbjct: 20582 tgctgccctctgccctgccc 20601 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,315,801 Number of Sequences: 3902068 Number of extensions: 2315801 Number of successful extensions: 51819 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51733 Number of HSP's gapped (non-prelim): 79 length of query: 330 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 308 effective length of database: 17,147,199,772 effective search space: 5281337529776 effective search space used: 5281337529776 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)