ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet52g12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479621.1| Oryza sativa (japonica cultivar-group), mRNA 117 2e-23
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 117 2e-23
3dbj|AP005199.3| Oryza sativa (japonica cultivar-group) genomic D... 117 2e-23
4dbj|AK061013.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 2e-23
5tpe|BN000645.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 117 2e-23
6emb|BX470078.6| Zebrafish DNA sequence from clone DKEYP-8C4 in l... 46 0.057
7emb|BX294169.10| Zebrafish DNA sequence from clone DKEY-151N15 i... 46 0.057
8gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete g... 42 0.90
9gb|AC129195.3| Mus musculus BAC clone RP24-150H14 from chromosom... 42 0.90
10ref|XM_544403.2| PREDICTED: Canis familiaris similar to Iroquois... 42 0.90
11gb|AC117500.13| Homo sapiens 12 BAC RP11-495K9 (Roswell Park Can... 42 0.90
12gb|AC150314.5| Mus musculus BAC clone RP23-269O24 from chromosom... 40 3.5
13emb|AL590103.12| Human DNA sequence from clone RP11-132G19 on ch... 40 3.5
14emb|AL392111.12| Human DNA sequence from clone RP11-487I5 on chr... 40 3.5
15gb|AC153894.8| Mus musculus 6 BAC RP23-118E20 (Roswell Park Canc... 40 3.5
16gb|AC158239.2| Mus musculus BAC clone RP23-48A24 from chromosome... 40 3.5
17emb|AL445799.1|CNS07EDD Homo sapiens (human) Human Heparan Sulfa... 40 3.5
18gb|AC140787.4| Mus musculus BAC clone RP23-411H17 from 10, compl... 40 3.5
19emb|AL627314.6| Mouse DNA sequence from clone RP23-354H24 on chr... 40 3.5 
>ref|XM_479621.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 993

 Score =  117 bits (59), Expect = 2e-23
 Identities = 113/131 (86%)
 Strand = Plus / Plus

                                                                       
Query: 142 gagagctgcccgagggcggagcagatcgtcaaggagcaggtgaggagcctgtacgaggag 201
           ||||| ||||||||||||||| || | || | |||| ||||| |||| ||||||||||||
Sbjct: 106 gagaggtgcccgagggcggaggaggtggtgagggaggaggtgcggaggctgtacgaggag 165

                                                                       
Query: 202 cacggcaacacggccgtgtcgtggctccgggccctcttccacgactgcaccgtcaagtcc 261
           |||||||||||||| ||||||||| |  |||| ||||||||||||||||  ||| | |||
Sbjct: 166 cacggcaacacggcggtgtcgtggttgagggcactcttccacgactgcatggtctactcc 225

                      
Query: 262 tgcgacgcctc 272
           |||||||||||
Sbjct: 226 tgcgacgcctc 236
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  117 bits (59), Expect = 2e-23
 Identities = 113/131 (86%)
 Strand = Plus / Minus

                                                                            
Query: 142      gagagctgcccgagggcggagcagatcgtcaaggagcaggtgaggagcctgtacgaggag 201
                ||||| ||||||||||||||| || | || | |||| ||||| |||| ||||||||||||
Sbjct: 29508793 gagaggtgcccgagggcggaggaggtggtgagggaggaggtgcggaggctgtacgaggag 29508734

                                                                            
Query: 202      cacggcaacacggccgtgtcgtggctccgggccctcttccacgactgcaccgtcaagtcc 261
                |||||||||||||| ||||||||| |  |||| ||||||||||||||||  ||| | |||
Sbjct: 29508733 cacggcaacacggcggtgtcgtggttgagggcactcttccacgactgcatggtctactcc 29508674

                           
Query: 262      tgcgacgcctc 272
                |||||||||||
Sbjct: 29508673 tgcgacgcctc 29508663
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>dbj|AP005199.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0627E10
          Length = 163388

 Score =  117 bits (59), Expect = 2e-23
 Identities = 113/131 (86%)
 Strand = Plus / Minus

                                                                         
Query: 142   gagagctgcccgagggcggagcagatcgtcaaggagcaggtgaggagcctgtacgaggag 201
             ||||| ||||||||||||||| || | || | |||| ||||| |||| ||||||||||||
Sbjct: 35465 gagaggtgcccgagggcggaggaggtggtgagggaggaggtgcggaggctgtacgaggag 35406

                                                                         
Query: 202   cacggcaacacggccgtgtcgtggctccgggccctcttccacgactgcaccgtcaagtcc 261
             |||||||||||||| ||||||||| |  |||| ||||||||||||||||  ||| | |||
Sbjct: 35405 cacggcaacacggcggtgtcgtggttgagggcactcttccacgactgcatggtctactcc 35346

                        
Query: 262   tgcgacgcctc 272
             |||||||||||
Sbjct: 35345 tgcgacgcctc 35335
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>dbj|AK061013.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-B06, full
           insert sequence
          Length = 1084

 Score =  117 bits (59), Expect = 2e-23
 Identities = 113/131 (86%)
 Strand = Plus / Plus

                                                                       
Query: 142 gagagctgcccgagggcggagcagatcgtcaaggagcaggtgaggagcctgtacgaggag 201
           ||||| ||||||||||||||| || | || | |||| ||||| |||| ||||||||||||
Sbjct: 3   gagaggtgcccgagggcggaggaggtggtgagggaggaggtgcggaggctgtacgaggag 62

                                                                       
Query: 202 cacggcaacacggccgtgtcgtggctccgggccctcttccacgactgcaccgtcaagtcc 261
           |||||||||||||| ||||||||| |  |||| ||||||||||||||||  ||| | |||
Sbjct: 63  cacggcaacacggcggtgtcgtggttgagggcactcttccacgactgcatggtctactcc 122

                      
Query: 262 tgcgacgcctc 272
           |||||||||||
Sbjct: 123 tgcgacgcctc 133
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>tpe|BN000645.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx116 gene
           for class III peroxidase 116 precursor, exon 1
          Length = 993

 Score =  117 bits (59), Expect = 2e-23
 Identities = 113/131 (86%)
 Strand = Plus / Plus

                                                                       
Query: 142 gagagctgcccgagggcggagcagatcgtcaaggagcaggtgaggagcctgtacgaggag 201
           ||||| ||||||||||||||| || | || | |||| ||||| |||| ||||||||||||
Sbjct: 106 gagaggtgcccgagggcggaggaggtggtgagggaggaggtgcggaggctgtacgaggag 165

                                                                       
Query: 202 cacggcaacacggccgtgtcgtggctccgggccctcttccacgactgcaccgtcaagtcc 261
           |||||||||||||| ||||||||| |  |||| ||||||||||||||||  ||| | |||
Sbjct: 166 cacggcaacacggcggtgtcgtggttgagggcactcttccacgactgcatggtctactcc 225

                      
Query: 262 tgcgacgcctc 272
           |||||||||||
Sbjct: 226 tgcgacgcctc 236
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>emb|BX470078.6| Zebrafish DNA sequence from clone DKEYP-8C4 in linkage group 5,
             complete sequence
          Length = 184333

 Score = 46.1 bits (23), Expect = 0.057
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 58    gcactgctgctcctgtgctgctg 80
             |||||||||||||||||||||||
Sbjct: 15468 gcactgctgctcctgtgctgctg 15490
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>emb|BX294169.10| Zebrafish DNA sequence from clone DKEY-151N15 in linkage group 5,
             complete sequence
          Length = 73230

 Score = 46.1 bits (23), Expect = 0.057
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 58    gcactgctgctcctgtgctgctg 80
             |||||||||||||||||||||||
Sbjct: 24863 gcactgctgctcctgtgctgctg 24885
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>gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete genome
          Length = 2314078

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 87     tggttggaatgctgccgcttc 107
              |||||||||||||||||||||
Sbjct: 703601 tggttggaatgctgccgcttc 703621
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>gb|AC129195.3| Mus musculus BAC clone RP24-150H14 from chromosome 1, complete
            sequence
          Length = 152726

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 68   tcctgtgctgctgcttcactg 88
            |||||||||||||||||||||
Sbjct: 8960 tcctgtgctgctgcttcactg 8940
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>ref|XM_544403.2| PREDICTED: Canis familiaris similar to Iroquois related homeobox 3
            (LOC487277), mRNA
          Length = 2198

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 149  gcccgagggcggagcagatcg 169
            |||||||||||||||||||||
Sbjct: 1944 gcccgagggcggagcagatcg 1964
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>gb|AC117500.13| Homo sapiens 12 BAC RP11-495K9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 180995

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 21    gatgggtctgagctcaagcct 41
             |||||||||||||||||||||
Sbjct: 60679 gatgggtctgagctcaagcct 60659
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>gb|AC150314.5| Mus musculus BAC clone RP23-269O24 from chromosome 10, complete
             sequence
          Length = 243006

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 20    agatgggtctgagctcaagcctgg 43
             |||||||||||| |||||||||||
Sbjct: 16168 agatgggtctgatctcaagcctgg 16145
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>emb|AL590103.12| Human DNA sequence from clone RP11-132G19 on chromosome 1 Contains a
              novel gene, the 3' end of the HSPG2 gene for  heparan
              sulfate proteoglycan 2 (perlecan), the 5' end of the  USP31
              gene for ubiquitin specific protease 31 and a CpG island,
              complete sequence
          Length = 175162

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 171    caaggagcaggtgaggagcc 190
              ||||||||||||||||||||
Sbjct: 164868 caaggagcaggtgaggagcc 164849
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>emb|AL392111.12| Human DNA sequence from clone RP11-487I5 on chromosome 10 Contains the
             DUSP13 gene for dual specificity phosphatase 13 (BEDP,
             TMDP, FLJ32450), the gene for a novel protein (FLJ25082),
             the 5' end fo the VDAC2 gene for voltage-dependent anion
             channel 2, a peptidylprolyl isomerase A (cyclophilin
             A)(PPIA)(CYPA, CYPH) pseudogene, a ribosomal protein S26
             (RPS26) pseudogene and two CpG islands, complete sequence
          Length = 159365

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    gctgctcctgtgctgctgct 82
             ||||||||||||||||||||
Sbjct: 31617 gctgctcctgtgctgctgct 31636
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>gb|AC153894.8| Mus musculus 6 BAC RP23-118E20 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 216116

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 37     agcctggtgccagtggcgtctgca 60
              ||||||||||||||||| ||||||
Sbjct: 130164 agcctggtgccagtggcctctgca 130187
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>gb|AC158239.2| Mus musculus BAC clone RP23-48A24 from chromosome 10, complete sequence
          Length = 256496

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 20    agatgggtctgagctcaagcctgg 43
             |||||||||||| |||||||||||
Sbjct: 72063 agatgggtctgatctcaagcctgg 72086
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>emb|AL445799.1|CNS07EDD Homo sapiens (human) Human Heparan Sulfate Proteoglycan (HSPG2)
           gene, exons 8 and 9
          Length = 594

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 171 caaggagcaggtgaggagcc 190
           ||||||||||||||||||||
Sbjct: 28  caaggagcaggtgaggagcc 47
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>gb|AC140787.4| Mus musculus BAC clone RP23-411H17 from 10, complete sequence
          Length = 217336

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 20     agatgggtctgagctcaagcctgg 43
              |||||||||||| |||||||||||
Sbjct: 131966 agatgggtctgatctcaagcctgg 131989
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>emb|AL627314.6| Mouse DNA sequence from clone RP23-354H24 on chromosome 4, complete
              sequence
          Length = 196461

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 218    tgtcgtggctccgggccctcttcc 241
              |||||||||||||| |||||||||
Sbjct: 187779 tgtcgtggctccggaccctcttcc 187756


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,054,821
Number of Sequences: 3902068
Number of extensions: 2054821
Number of successful extensions: 40166
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40124
Number of HSP's gapped (non-prelim): 42
length of query: 272
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 250
effective length of database: 17,147,199,772
effective search space: 4286799943000
effective search space used: 4286799943000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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