ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet52g09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransgly... 248 6e-63
2emb|AJ295943.1|FPR295943 Festuca pratensis mRNA for Xet1 protein 123 2e-25
3gb|AY105365.1| Zea mays PCO092487 mRNA sequence 68 1e-08
4gb|U15964.1|ZMU15964 Zea mays xyloglucan endo-transglycosylase h... 68 1e-08
5gb|U15781.1|ZMU15781 Zea mays xyloglucan endo-transglycosylase h... 68 1e-08
6dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 62 8e-07
7dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic D... 62 8e-07
8dbj|AK120345.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 8e-07
9dbj|AK105513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 8e-07
10dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
11dbj|AK105934.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
12dbj|AB196977.1| Sagittaria pygmaea SpXTH4 mRNA for xyloglucan en... 48 0.012
13gb|AC130671.7| Mus musculus chromosome 15, clone RP24-90K19, com... 44 0.18
14gb|AC107232.4| Mus musculus chromosome 15, clone RP23-144B2, com... 44 0.18
15gb|AC120988.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.72
16gb|AC007858.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.72
17dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.72
18gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 2.9
19gb|AE009201.1| Agrobacterium tumefaciens str. C58 circular chrom... 40 2.9
20gb|AC115863.17| Mus musculus chromosome 9, clone RP24-295J1, com... 40 2.9
21emb|CR382386.8| Zebrafish DNA sequence from clone DKEY-111O10 in... 40 2.9
22emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 2.9
23emb|AL158206.8| Human DNA sequence from clone RP11-363E7 on chro... 40 2.9
24emb|AJ421977.1|SMA421977 Stenotrophomonas maltophilia partial pa... 40 2.9
25emb|AJ421975.1|SMA421975 Stenotrophomonas maltophilia partial pa... 40 2.9
26emb|AJ421974.1|SMA421974 Stenotrophomonas maltophilia partial pa... 40 2.9
27emb|AJ421973.1|SMA421973 Stenotrophomonas maltophilia partial pa... 40 2.9
28gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 2.9
29gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 40 2.9
30gb|AE012271.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 2.9
31gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 40 2.9
32gb|AC134763.4| Rattus norvegicus BAC CH230-221M14 (Children's H... 40 2.9
33emb|BX248323.8| Zebrafish DNA sequence from clone CH211-199J6, c... 40 2.9
34gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 2.9
35gb|AF232237.1|AF232237 Agrobacterium tumefaciens SAICAR syntheta... 40 2.9
36emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 2.9
37emb|BX908393.10| Zebrafish DNA sequence from clone CH211-180H19 ... 40 2.9
38gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 2.9
39gb|AC135861.5| Mus musculus BAC clone RP23-179J18 from 6, comple... 40 2.9
40gb|AC131660.4| Mus musculus BAC clone RP23-241P13 from 9, comple... 40 2.9
41gb|AC170806.2| Mus musculus BAC clone RP24-363P6 from chromosome... 40 2.9 
>emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
           (XEA)
          Length = 1174

 Score =  248 bits (125), Expect = 6e-63
 Identities = 149/157 (94%)
 Strand = Plus / Plus

                                                                       
Query: 68  aacgcatggctcgcatggcggtctcggtgctttcgatcctcctcgccacttgcgccctgg 127
           |||||||||||||||||| ||  ||||||||||||||||| |||||| ||||||||||||
Sbjct: 44  aacgcatggctcgcatgggggcgtcggtgctttcgatcctgctcgcctcttgcgccctgg 103

                                                                       
Query: 128 cggcggcgagcttcgacaaggagttcgacgttacctggggtgacgggcgcggcaagatcc 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 cggcggcgagcttcgacaaggagttcgacgttacctggggtgacgggcgcggcaagatcc 163

                                                
Query: 188 tcaacaatggccagctgctgacgctgggcctggacaa 224
           ||||||| |||||||| ||||||||||| ||||||||
Sbjct: 164 tcaacaacggccagctcctgacgctgggactggacaa 200
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>emb|AJ295943.1|FPR295943 Festuca pratensis mRNA for Xet1 protein
          Length = 1187

 Score =  123 bits (62), Expect = 2e-25
 Identities = 133/156 (85%), Gaps = 3/156 (1%)
 Strand = Plus / Plus

                                                                       
Query: 72  catggctcgcatggcggtctcggtgctttcgatcctcctcgccacttgcgccct---ggc 128
           |||||||||||||||||| ||||||||  ||||||| || ||  |||| ||| |   |||
Sbjct: 123 catggctcgcatggcggtgtcggtgctggcgatcctgctggcgtcttgtgccgttgcggc 182

                                                                       
Query: 129 ggcggcgagcttcgacaaggagttcgacgttacctggggtgacgggcgcggcaagatcct 188
           |||||||||||||||||||||||||||| | || ||||| ||||| || || ||||||||
Sbjct: 183 ggcggcgagcttcgacaaggagttcgacatcacgtggggcgacggccgtggaaagatcct 242

                                               
Query: 189 caacaatggccagctgctgacgctgggcctggacaa 224
           ||||||||| ||||| ||||| ||||| ||||||||
Sbjct: 243 caacaatgggcagctcctgaccctggggctggacaa 278
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>gb|AY105365.1| Zea mays PCO092487 mRNA sequence
          Length = 1253

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 49/54 (90%)
 Strand = Plus / Plus

                                                                 
Query: 160 acctggggtgacgggcgcggcaagatcctcaacaatggccagctgctgacgctg 213
           |||||||| ||||| ||||||||||||||| |||| |||||||| |||||||||
Sbjct: 204 acctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctg 257
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>gb|U15964.1|ZMU15964 Zea mays xyloglucan endo-transglycosylase homolog gene, complete
           cds
          Length = 1827

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 49/54 (90%)
 Strand = Plus / Plus

                                                                 
Query: 160 acctggggtgacgggcgcggcaagatcctcaacaatggccagctgctgacgctg 213
           |||||||| ||||| ||||||||||||||| |||| |||||||| |||||||||
Sbjct: 94  acctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctg 147
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>gb|U15781.1|ZMU15781 Zea mays xyloglucan endo-transglycosylase homolog mRNA, complete
           cds
          Length = 1221

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 49/54 (90%)
 Strand = Plus / Plus

                                                                 
Query: 160 acctggggtgacgggcgcggcaagatcctcaacaatggccagctgctgacgctg 213
           |||||||| ||||| ||||||||||||||| |||| |||||||| |||||||||
Sbjct: 211 acctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctg 264
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                            
Query: 146      aggagttcgacgttacctggggtgacgggcgcggcaagatcctcaacaatggccagctgc 205
                ||||||||||| | |||||||| || || || |||||||||||| |  ||||||||||||
Sbjct: 28774036 aggagttcgacatcacctggggcgatggccgtggcaagatcctcgaggatggccagctgc 28773977

                       
Query: 206      tgacgct 212
                |||||||
Sbjct: 28773976 tgacgct 28773970



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                   
Query: 163      tggggtgacgggcgcggcaagatcctcaacaatggccagctgctgacgctg 213
                ||||| ||||| |||||||||||||||  ||| |||||||| |||||||||
Sbjct: 28761428 tggggcgacggccgcggcaagatcctcggcaacggccagctcctgacgctg 28761478
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>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0028E05
          Length = 157631

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                         
Query: 146   aggagttcgacgttacctggggtgacgggcgcggcaagatcctcaacaatggccagctgc 205
             ||||||||||| | |||||||| || || || |||||||||||| |  ||||||||||||
Sbjct: 81811 aggagttcgacatcacctggggcgatggccgtggcaagatcctcgaggatggccagctgc 81752

                    
Query: 206   tgacgct 212
             |||||||
Sbjct: 81751 tgacgct 81745



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                
Query: 163   tggggtgacgggcgcggcaagatcctcaacaatggccagctgctgacgctg 213
             ||||| ||||| |||||||||||||||  ||| |||||||| |||||||||
Sbjct: 69203 tggggcgacggccgcggcaagatcctcggcaacggccagctcctgacgctg 69253
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>dbj|AK120345.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063H05, full
           insert sequence
          Length = 566

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                       
Query: 146 aggagttcgacgttacctggggtgacgggcgcggcaagatcctcaacaatggccagctgc 205
           ||||||||||| | |||||||| || || || |||||||||||| |  ||||||||||||
Sbjct: 196 aggagttcgacatcacctggggcgatggccgtggcaagatcctcgaggatggccagctgc 255

                  
Query: 206 tgacgct 212
           |||||||
Sbjct: 256 tgacgct 262
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>dbj|AK105513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-F01, full
           insert sequence
          Length = 1253

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                       
Query: 146 aggagttcgacgttacctggggtgacgggcgcggcaagatcctcaacaatggccagctgc 205
           ||||||||||| | |||||||| || || || |||||||||||| |  ||||||||||||
Sbjct: 186 aggagttcgacatcacctggggcgatggccgtggcaagatcctcgaggatggccagctgc 245

                  
Query: 206 tgacgct 212
           |||||||
Sbjct: 246 tgacgct 252
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>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0622F03
          Length = 170064

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                 
Query: 163    tggggtgacgggcgcggcaagatcctcaacaatggccagctgctgacgctg 213
              ||||| ||||| |||||||||||||||  ||| |||||||| |||||||||
Sbjct: 161994 tggggcgacggccgcggcaagatcctcggcaacggccagctcctgacgctg 162044
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>dbj|AK105934.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-B05, full
           insert sequence
          Length = 1101

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                              
Query: 163 tggggtgacgggcgcggcaagatcctcaacaatggccagctgctgacgctg 213
           ||||| ||||| |||||||||||||||  ||| |||||||| |||||||||
Sbjct: 194 tggggcgacggccgcggcaagatcctcggcaacggccagctcctgacgctg 244
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>dbj|AB196977.1| Sagittaria pygmaea SpXTH4 mRNA for xyloglucan
           endotransglucosylase/hydrolase, complete cds
          Length = 1181

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                       
Query: 136 agcttcgacaaggagttcgacgttacctggggtgacgggcgcggcaagatcctcaacaat 195
           |||||| |||| || |||||| | ||||||||||| || || || |||||||| ||||| 
Sbjct: 316 agcttcaacaacgatttcgacatcacctggggtgatggccgggggaagatcctaaacaac 375

                   
Query: 196 ggccagct 203
           ||||||||
Sbjct: 376 ggccagct 383
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>gb|AC130671.7| Mus musculus chromosome 15, clone RP24-90K19, complete sequence
          Length = 205646

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 1     acacagacacaatcttccttcc 22
             ||||||||||||||||||||||
Sbjct: 55051 acacagacacaatcttccttcc 55030
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>gb|AC107232.4| Mus musculus chromosome 15, clone RP23-144B2, complete sequence
          Length = 204292

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 1    acacagacacaatcttccttcc 22
            ||||||||||||||||||||||
Sbjct: 5240 acacagacacaatcttccttcc 5261
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>gb|AC120988.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0017N18, complete sequence
          Length = 156643

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 14    cttccttccatccatccagct 34
             |||||||||||||||||||||
Sbjct: 43085 cttccttccatccatccagct 43105
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>gb|AC007858.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone BAC 10A19I,
             complete sequence
          Length = 99587

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 14    cttccttccatccatccagct 34
             |||||||||||||||||||||
Sbjct: 30357 cttccttccatccatccagct 30377
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 14       cttccttccatccatccagct 34
                |||||||||||||||||||||
Sbjct: 28615293 cttccttccatccatccagct 28615313
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 174    gcgcggcaagatcctcaaca 193
              ||||||||||||||||||||
Sbjct: 578416 gcgcggcaagatcctcaaca 578435
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>gb|AE009201.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 227
            of 256 of the complete sequence
          Length = 11399

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 131  cggcgagcttcgacaaggagttcg 154
            ||||||||||||||||||| ||||
Sbjct: 4271 cggcgagcttcgacaaggatttcg 4294
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>gb|AC115863.17| Mus musculus chromosome 9, clone RP24-295J1, complete sequence
          Length = 174095

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    cttccttccatccatccagc 33
             ||||||||||||||||||||
Sbjct: 62928 cttccttccatccatccagc 62947
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>emb|CR382386.8| Zebrafish DNA sequence from clone DKEY-111O10 in linkage group 14,
             complete sequence
          Length = 162528

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    atcttccttccatccatcca 31
             ||||||||||||||||||||
Sbjct: 26365 atcttccttccatccatcca 26346
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 174     gcgcggcaagatcctcaaca 193
               ||||||||||||||||||||
Sbjct: 1970047 gcgcggcaagatcctcaaca 1970028
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>emb|AL158206.8| Human DNA sequence from clone RP11-363E7 on chromosome 9 Contains the
             3' end of a novel gene, possible ortholog of mouse cancer
             related gene-liver 1 (CRG-L1), a tmicortubule-associated
             protein pseudogene, the 3' end of the SLC24A2 gene for
             solute carrier family 24 (sodium/potassium/calcium
             exchanger) member 2 (NCKX2) and 2 CpG islands, complete
             sequence
          Length = 163542

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 2     cacagacacaatcttccttccatc 25
             |||||||||| |||||||||||||
Sbjct: 63550 cacagacacagtcttccttccatc 63573
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>emb|AJ421977.1|SMA421977 Stenotrophomonas maltophilia partial parE gene for topoisomerase
           IV, strain sm199
          Length = 480

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 174 gcgcggcaagatcctcaaca 193
           ||||||||||||||||||||
Sbjct: 129 gcgcggcaagatcctcaaca 148
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>emb|AJ421975.1|SMA421975 Stenotrophomonas maltophilia partial parE gene for topoisomerase
           IV, strain sm8
          Length = 480

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 174 gcgcggcaagatcctcaaca 193
           ||||||||||||||||||||
Sbjct: 129 gcgcggcaagatcctcaaca 148
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>emb|AJ421974.1|SMA421974 Stenotrophomonas maltophilia partial parE gene for topoisomerase
           IV, strain sm117
          Length = 480

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 174 gcgcggcaagatcctcaaca 193
           ||||||||||||||||||||
Sbjct: 129 gcgcggcaagatcctcaaca 148
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>emb|AJ421973.1|SMA421973 Stenotrophomonas maltophilia partial parE gene for topoisomerase
           IV, strain sm98
          Length = 480

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 174 gcgcggcaagatcctcaaca 193
           ||||||||||||||||||||
Sbjct: 129 gcgcggcaagatcctcaaca 148
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 174    gcgcggcaagatcctcaaca 193
              ||||||||||||||||||||
Sbjct: 636185 gcgcggcaagatcctcaaca 636204
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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    gcgcggcaagatcctcaaca 193
              ||||||||||||||||||||
Sbjct: 338395 gcgcggcaagatcctcaaca 338376
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>gb|AE012271.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 179
            of 460 of the complete genome
          Length = 10028

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 174  gcgcggcaagatcctcaaca 193
            ||||||||||||||||||||
Sbjct: 1720 gcgcggcaagatcctcaaca 1701
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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 131     cggcgagcttcgacaaggagttcg 154
               ||||||||||||||||||| ||||
Sbjct: 2519732 cggcgagcttcgacaaggatttcg 2519755
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>gb|AC134763.4| Rattus norvegicus  BAC CH230-221M14 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 222524

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      acaatcttccttccatccat 28
              ||||||||||||||||||||
Sbjct: 206626 acaatcttccttccatccat 206607
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>emb|BX248323.8| Zebrafish DNA sequence from clone CH211-199J6, complete sequence
          Length = 177714

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 16    tccttccatccatccagctttgtc 39
             |||||||||||||||| |||||||
Sbjct: 99705 tccttccatccatccatctttgtc 99682
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 174     gcgcggcaagatcctcaaca 193
               ||||||||||||||||||||
Sbjct: 3067621 gcgcggcaagatcctcaaca 3067640
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>gb|AF232237.1|AF232237 Agrobacterium tumefaciens SAICAR synthetase (purC) gene, partial
           cds; and TetR family bacterial regulatory protein
           (ameR), membrane fusion protein (ameA), multidrug efflux
           transporter RND family protein (ameB), and outer
           membrane protein (ameC) genes, complete cds
          Length = 7277

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 131 cggcgagcttcgacaaggagttcg 154
           ||||||||||||||||||| ||||
Sbjct: 119 cggcgagcttcgacaaggatttcg 142
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 174     gcgcggcaagatcctcaaca 193
               ||||||||||||||||||||
Sbjct: 5273940 gcgcggcaagatcctcaaca 5273921
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>emb|BX908393.10| Zebrafish DNA sequence from clone CH211-180H19 in linkage group 18,
              complete sequence
          Length = 138757

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     cttccttccatccatccagc 33
              ||||||||||||||||||||
Sbjct: 101448 cttccttccatccatccagc 101429
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 174     gcgcggcaagatcctcaaca 193
               ||||||||||||||||||||
Sbjct: 5587812 gcgcggcaagatcctcaaca 5587793
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>gb|AC135861.5| Mus musculus BAC clone RP23-179J18 from 6, complete sequence
          Length = 202869

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    cttccttccatccatccagc 33
             ||||||||||||||||||||
Sbjct: 73118 cttccttccatccatccagc 73099
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>gb|AC131660.4| Mus musculus BAC clone RP23-241P13 from 9, complete sequence
          Length = 220247

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     cttccttccatccatccagc 33
              ||||||||||||||||||||
Sbjct: 206806 cttccttccatccatccagc 206825
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>gb|AC170806.2| Mus musculus BAC clone RP24-363P6 from chromosome 8, complete sequence
          Length = 182564

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    atcttccttccatccatcca 31
             ||||||||||||||||||||
Sbjct: 59711 atcttccttccatccatcca 59692


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,186,854
Number of Sequences: 3902068
Number of extensions: 2186854
Number of successful extensions: 146042
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 144991
Number of HSP's gapped (non-prelim): 1049
length of query: 224
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 202
effective length of database: 17,147,199,772
effective search space: 3463734353944
effective search space used: 3463734353944
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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