ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet52g05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U73216.1|TAU73216 Triticum aestivum cold acclimation protein WCOR413 (Wcor413) mRNA, complete cds Length = 896 Score = 246 bits (124), Expect = 3e-62 Identities = 145/152 (95%) Strand = Plus / Plus Query: 78 cgcgcgctcggcgatggcgaactcgttcctctcgatgaagacgggcccggcggccggcgc 137 |||||||| | | ||||| || ||||||||| |||||||||||||||||||||||||||| Sbjct: 51 cgcgcgctagcccatggcaaagtcgttcctcgcgatgaagacgggcccggcggccggcgc 110 Query: 138 gtcggaggcgtcgcaggcgctgctcgagtcggacctgcgggagctgaccatggcggcgcg 197 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 111 gtcggaggcgtcgcaggcgctgctggagtcggacctgcgggagctgaccatggcggcgcg 170 Query: 198 gaagctcgccaaccacgccatcgtcctcggcg 229 |||||||||||||||||||||||||||||||| Sbjct: 171 gaagctcgccaaccacgccatcgtcctcggcg 202
>gb|AY057118.1| Triticum aestivum cold acclimation protein WCOR413-like protein beta form mRNA, complete cds Length = 993 Score = 202 bits (102), Expect = 3e-49 Identities = 123/130 (94%) Strand = Plus / Plus Query: 100 tcgttcctctcgatgaagacgggcccggcggccggcgcgtcggaggcgtcgcaggcgctg 159 ||||||||| |||||||| ||||| ||||| ||||||||||||||||| ||||||||||| Sbjct: 74 tcgttcctcgcgatgaaggcgggcgcggcgtccggcgcgtcggaggcggcgcaggcgctg 133 Query: 160 ctcgagtcggacctgcgggagctgaccatggcggcgcggaagctcgccaaccacgccatc 219 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 134 ctcgagtcggacctgcgggagctgggcatggcggcgcggaagctcgccaaccacgccatc 193 Query: 220 gtcctcggcg 229 |||||||||| Sbjct: 194 gtcctcggcg 203
>ref|XM_469914.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1118 Score = 73.8 bits (37), Expect = 2e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 169 gacctgcgggagctgaccatggcggcgcggaagctcgccaaccacgccatcgtcctcggc 228 ||||||| ||||||| | |||||||||||||||||||||||||||| ||||||||||| Sbjct: 219 gacctgcaggagctgggcgtggcggcgcggaagctcgccaaccacgcgctcgtcctcggc 278 Query: 229 g 229 | Sbjct: 279 g 279
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 73.8 bits (37), Expect = 2e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 169 gacctgcgggagctgaccatggcggcgcggaagctcgccaaccacgccatcgtcctcggc 228 ||||||| ||||||| | |||||||||||||||||||||||||||| ||||||||||| Sbjct: 31486931 gacctgcaggagctgggcgtggcggcgcggaagctcgccaaccacgcgctcgtcctcggc 31486990 Query: 229 g 229 | Sbjct: 31486991 g 31486991
>gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete sequence Length = 133449 Score = 73.8 bits (37), Expect = 2e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 169 gacctgcgggagctgaccatggcggcgcggaagctcgccaaccacgccatcgtcctcggc 228 ||||||| ||||||| | |||||||||||||||||||||||||||| ||||||||||| Sbjct: 105665 gacctgcaggagctgggcgtggcggcgcggaagctcgccaaccacgcgctcgtcctcggc 105606 Query: 229 g 229 | Sbjct: 105605 g 105605
>gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete sequence Length = 159091 Score = 73.8 bits (37), Expect = 2e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 169 gacctgcgggagctgaccatggcggcgcggaagctcgccaaccacgccatcgtcctcggc 228 ||||||| ||||||| | |||||||||||||||||||||||||||| ||||||||||| Sbjct: 8869 gacctgcaggagctgggcgtggcggcgcggaagctcgccaaccacgcgctcgtcctcggc 8810 Query: 229 g 229 | Sbjct: 8809 g 8809
>gb|AF283006.1| Oryza sativa (japonica cultivar-group) cold acclimation protein WCOR413-like protein mRNA, complete cds Length = 1057 Score = 73.8 bits (37), Expect = 2e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 169 gacctgcgggagctgaccatggcggcgcggaagctcgccaaccacgccatcgtcctcggc 228 ||||||| ||||||| | |||||||||||||||||||||||||||| ||||||||||| Sbjct: 192 gacctgcaggagctgggcgtggcggcgcggaagctcgccaaccacgcgctcgtcctcggc 251 Query: 229 g 229 | Sbjct: 252 g 252
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 73.8 bits (37), Expect = 2e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 169 gacctgcgggagctgaccatggcggcgcggaagctcgccaaccacgccatcgtcctcggc 228 ||||||| ||||||| | |||||||||||||||||||||||||||| ||||||||||| Sbjct: 31577447 gacctgcaggagctgggcgtggcggcgcggaagctcgccaaccacgcgctcgtcctcggc 31577506 Query: 229 g 229 | Sbjct: 31577507 g 31577507
>dbj|AK060906.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F05, full insert sequence Length = 1031 Score = 73.8 bits (37), Expect = 2e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 169 gacctgcgggagctgaccatggcggcgcggaagctcgccaaccacgccatcgtcctcggc 228 ||||||| ||||||| | |||||||||||||||||||||||||||| ||||||||||| Sbjct: 188 gacctgcaggagctgggcgtggcggcgcggaagctcgccaaccacgcgctcgtcctcggc 247 Query: 229 g 229 | Sbjct: 248 g 248
>dbj|AK060000.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-G09, full insert sequence Length = 1061 Score = 73.8 bits (37), Expect = 2e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 169 gacctgcgggagctgaccatggcggcgcggaagctcgccaaccacgccatcgtcctcggc 228 ||||||| ||||||| | |||||||||||||||||||||||||||| ||||||||||| Sbjct: 236 gacctgcaggagctgggcgtggcggcgcggaagctcgccaaccacgcgctcgtcctcggc 295 Query: 229 g 229 | Sbjct: 296 g 296
>dbj|AK066036.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049B03, full insert sequence Length = 1116 Score = 67.9 bits (34), Expect = 1e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 188 tggcggcgcggaagctcgccaaccacgccatcgtcctcggcg 229 |||||||||||||||||||||||||||| |||||||||||| Sbjct: 235 tggcggcgcggaagctcgccaaccacgcgctcgtcctcggcg 276
>gb|BT017742.1| Zea mays clone EL01N0449E04.c mRNA sequence Length = 1064 Score = 65.9 bits (33), Expect = 5e-08 Identities = 101/123 (82%), Gaps = 3/123 (2%) Strand = Plus / Plus Query: 110 cgatgaagacgggcccggcggccggcg---cgtcggaggcgtcgcaggcgctgctcgagt 166 ||||||||||||| |||| || ||||| || ||| |||| |||||| ||| |||| Sbjct: 126 cgatgaagacggggccggagggcggcgacgcggcggcggcgcagcaggctctgatcgacg 185 Query: 167 cggacctgcgggagctgaccatggcggcgcggaagctcgccaaccacgccatcgtcctcg 226 |||||||||||||||| | | || ||||||||||||||||||||||| ||||||||| Sbjct: 186 cggacctgcgggagctcggcgtcgccgcgcggaagctcgccaaccacgcattcgtcctcg 245 Query: 227 gcg 229 ||| Sbjct: 246 gcg 248
>gb|AY181208.1| Zea mays cold acclimation protein COR413-PM1 mRNA, complete cds Length = 1126 Score = 65.9 bits (33), Expect = 5e-08 Identities = 101/123 (82%), Gaps = 3/123 (2%) Strand = Plus / Plus Query: 110 cgatgaagacgggcccggcggccggcg---cgtcggaggcgtcgcaggcgctgctcgagt 166 ||||||||||||| |||| || ||||| || ||| |||| |||||| ||| |||| Sbjct: 98 cgatgaagacggggccggagggcggcgacgcggcggcggcgcagcaggctctgatcgacg 157 Query: 167 cggacctgcgggagctgaccatggcggcgcggaagctcgccaaccacgccatcgtcctcg 226 |||||||||||||||| | | || ||||||||||||||||||||||| ||||||||| Sbjct: 158 cggacctgcgggagctcggcgtcgccgcgcggaagctcgccaaccacgcattcgtcctcg 217 Query: 227 gcg 229 ||| Sbjct: 218 gcg 220
>gb|AY106041.1| Zea mays PCO103483 mRNA sequence Length = 1220 Score = 65.9 bits (33), Expect = 5e-08 Identities = 101/123 (82%), Gaps = 3/123 (2%) Strand = Plus / Plus Query: 110 cgatgaagacgggcccggcggccggcg---cgtcggaggcgtcgcaggcgctgctcgagt 166 ||||||||||||| |||| || ||||| || ||| |||| |||||| ||| |||| Sbjct: 286 cgatgaagacggggccggagggcggcgacgcggcggcggcgcagcaggctctgatcgacg 345 Query: 167 cggacctgcgggagctgaccatggcggcgcggaagctcgccaaccacgccatcgtcctcg 226 |||||||||||||||| | | || ||||||||||||||||||||||| ||||||||| Sbjct: 346 cggacctgcgggagctcggcgtcgccgcgcggaagctcgccaaccacgcattcgtcctcg 405 Query: 227 gcg 229 ||| Sbjct: 406 gcg 408
>ref|XM_546236.2| PREDICTED: Canis familiaris similar to Neuralized-like protein 1 (m-neuralized 1) (m-neu1) (LOC489118), mRNA Length = 1827 Score = 46.1 bits (23), Expect = 0.047 Identities = 29/31 (93%) Strand = Plus / Plus Query: 146 cgtcgcaggcgctgctcgagtcggacctgcg 176 |||||| ||||||||||||| |||||||||| Sbjct: 1064 cgtcgccggcgctgctcgaggcggacctgcg 1094
>gb|AC122145.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0034B05, complete sequence Length = 125655 Score = 46.1 bits (23), Expect = 0.047 Identities = 29/31 (93%) Strand = Plus / Plus Query: 195 gcggaagctcgccaaccacgccatcgtcctc 225 ||||||||||||||||||||| |||||||| Sbjct: 34169 gcggaagctcgccaaccacgcgctcgtcctc 34199
>gb|AC097446.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0034B05, complete sequence Length = 175061 Score = 46.1 bits (23), Expect = 0.047 Identities = 29/31 (93%) Strand = Plus / Plus Query: 195 gcggaagctcgccaaccacgccatcgtcctc 225 ||||||||||||||||||||| |||||||| Sbjct: 149230 gcggaagctcgccaaccacgcgctcgtcctc 149260
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 46.1 bits (23), Expect = 0.047 Identities = 29/31 (93%) Strand = Plus / Plus Query: 195 gcggaagctcgccaaccacgccatcgtcctc 225 ||||||||||||||||||||| |||||||| Sbjct: 3377385 gcggaagctcgccaaccacgcgctcgtcctc 3377415
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 46.1 bits (23), Expect = 0.047 Identities = 29/31 (93%) Strand = Plus / Plus Query: 195 gcggaagctcgccaaccacgccatcgtcctc 225 ||||||||||||||||||||| |||||||| Sbjct: 3377306 gcggaagctcgccaaccacgcgctcgtcctc 3377336
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Plus Query: 75 ccgcgcgcgctcggcgatggc 95 ||||||||||||||||||||| Sbjct: 933154 ccgcgcgcgctcggcgatggc 933174
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 0.74 Identities = 24/25 (96%) Strand = Plus / Minus Query: 73 tcccgcgcgcgctcggcgatggcga 97 |||||||||||||||||||| |||| Sbjct: 738751 tcccgcgcgcgctcggcgatcgcga 738727
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 0.74 Identities = 24/25 (96%) Strand = Plus / Minus Query: 73 tcccgcgcgcgctcggcgatggcga 97 |||||||||||||||||||| |||| Sbjct: 1261661 tcccgcgcgcgctcggcgatcgcga 1261637
>emb|BX572596.1| Rhodopseudomonas palustris CGA009 complete genome; segment 4/16 Length = 348942 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Plus Query: 177 ggagctgaccatggcggcgcg 197 ||||||||||||||||||||| Sbjct: 147160 ggagctgaccatggcggcgcg 147180
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 0.74 Identities = 24/25 (96%) Strand = Plus / Minus Query: 73 tcccgcgcgcgctcggcgatggcga 97 |||||||||||||||||||| |||| Sbjct: 1164547 tcccgcgcgcgctcggcgatcgcga 1164523
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 gctcggcgatggcgaactcgt 103 ||||||||||||||||||||| Sbjct: 1208684 gctcggcgatggcgaactcgt 1208704
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Minus Query: 195 gcggaagctcgccaaccacgc 215 ||||||||||||||||||||| Sbjct: 18939292 gcggaagctcgccaaccacgc 18939272
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Minus Query: 73 tcccgcgcgcgctcggcgatg 93 ||||||||||||||||||||| Sbjct: 1459956 tcccgcgcgcgctcggcgatg 1459936
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 gctcggcgatggcgaactcgt 103 ||||||||||||||||||||| Sbjct: 2110564 gctcggcgatggcgaactcgt 2110584
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 0.74 Identities = 24/25 (96%) Strand = Plus / Minus Query: 73 tcccgcgcgcgctcggcgatggcga 97 |||||||||||||||||||| |||| Sbjct: 977462 tcccgcgcgcgctcggcgattgcga 977438
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Minus Query: 195 gcggaagctcgccaaccacgc 215 ||||||||||||||||||||| Sbjct: 18865519 gcggaagctcgccaaccacgc 18865499
>emb|AL831808.4|CNS08CAL Oryza sativa chromosome 12, . BAC OSJNBa0028H02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 153064 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 gcggaagctcgccaaccacgc 215 ||||||||||||||||||||| Sbjct: 31087 gcggaagctcgccaaccacgc 31107
>emb|BX255875.3|CNS09S4W Oryza sativa chromosome 12, . BAC OSJNBa0018L16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151203 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Minus Query: 195 gcggaagctcgccaaccacgc 215 ||||||||||||||||||||| Sbjct: 35409 gcggaagctcgccaaccacgc 35389
>gb|AC152105.2| Ostreococcus sp. CCE9901 clone JGIACFB-9A3, complete sequence Length = 40909 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 cggcgcgtcggaggcgtcgc 151 |||||||||||||||||||| Sbjct: 17528 cggcgcgtcggaggcgtcgc 17509
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 2.9 Identities = 35/40 (87%) Strand = Plus / Minus Query: 118 acgggcccggcggccggcgcgtcggaggcgtcgcaggcgc 157 |||||| |||||||||||||| ||| ||| |||| ||||| Sbjct: 71371 acgggcgcggcggccggcgcggcgggggcttcgccggcgc 71332
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 gccaaccacgccatcgtcct 224 |||||||||||||||||||| Sbjct: 4334839 gccaaccacgccatcgtcct 4334820
>gb|AC112676.8| Mus musculus chromosome 9, clone RP23-174F7, complete sequence Length = 230293 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 taaaaaagaggtttgtttgt 66 |||||||||||||||||||| Sbjct: 228272 taaaaaagaggtttgtttgt 228291
>gb|AC124439.4| Mus musculus BAC clone RP24-261N14 from chromosome 9, complete sequence Length = 162530 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 taaaaaagaggtttgtttgt 66 |||||||||||||||||||| Sbjct: 4311 taaaaaagaggtttgtttgt 4330
>ref|XM_847950.1| PREDICTED: Canis familiaris similar to H6 homeo box 1 (LOC610441), mRNA Length = 897 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 120 gggcccggcggccggcgcgtcggaggcg 147 ||||||||||||||||||| ||||||| Sbjct: 357 gggcccggcggccggcgcggaggaggcg 384
>emb|AL022394.3|HS511B24 Human DNA sequence from clone RP3-511B24 on chromosome 20q11.2-12 Contains the 3' end of the TOP1 gene for topoisomerase (DNA) I, the PLCG1 gene for phospholipase C gamma 1, the 3' end of the TIX1 gene for triple homeobox 1, a ribosomal protein L23 (RPL23) pseudogene, a novel gene, the 5' end of a novel gene and a CpG island, complete sequence Length = 146547 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 ggcccggcggccggcgcgtc 140 |||||||||||||||||||| Sbjct: 32377 ggcccggcggccggcgcgtc 32358
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 2.9 Identities = 35/40 (87%) Strand = Plus / Minus Query: 118 acgggcccggcggccggcgcgtcggaggcgtcgcaggcgc 157 |||||| |||||||||||||| ||| ||| |||| ||||| Sbjct: 1466933 acgggcgcggcggccggcgcggcgggggcttcgccggcgc 1466894
>gb|AF533768.1| Cercopithecine herpesvirus 1 strain E2490, complete genome Length = 156789 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 ggggtctcccgcgcgcgctc 86 |||||||||||||||||||| Sbjct: 125586 ggggtctcccgcgcgcgctc 125567 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 ggggtctcccgcgcgcgctc 86 |||||||||||||||||||| Sbjct: 272 ggggtctcccgcgcgcgctc 291
>gb|AY230747.1| Cercopithecine herpesvirus 1 strain A4 L-terminal SphI fragment, genomic sequence Length = 1778 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 ggggtctcccgcgcgcgctc 86 |||||||||||||||||||| Sbjct: 273 ggggtctcccgcgcgcgctc 292
>gb|AE012014.1| Xanthomonas axonopodis pv. citri str. 306, section 392 of 469 of the complete genome Length = 11389 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 gccaaccacgccatcgtcct 224 |||||||||||||||||||| Sbjct: 1206 gccaaccacgccatcgtcct 1187
>dbj|AB168513.1| Macaca fascicularis testis cDNA clone: QtsA-12694, similar to human heme-regulated initiation factor 2-alpha kinase (HRI),mRNA, RefSeq: NM_014413.2 Length = 2195 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 cccgcgcgcgctcggcgatg 93 |||||||||||||||||||| Sbjct: 35 cccgcgcgcgctcggcgatg 54
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 tctcccgcgcgcgctcggcg 90 |||||||||||||||||||| Sbjct: 4486418 tctcccgcgcgcgctcggcg 4486399
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 147 gtcgcaggcgctgctcgagtcgga 170 |||| ||||||||||||||||||| Sbjct: 939233 gtcggaggcgctgctcgagtcgga 939256
>emb|AJ330032.1|HSA330032 Homo sapiens genomic sequence surrounding NotI site, clone NR1-WG4R Length = 734 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 ggcccggcggccggcgcgtc 140 |||||||||||||||||||| Sbjct: 48 ggcccggcggccggcgcgtc 29
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 gcgcgcgctcggcgatggcg 96 |||||||||||||||||||| Sbjct: 610096 gcgcgcgctcggcgatggcg 610115
>gb|AC122315.5| Mus musculus BAC clone RP23-302P6 from 10, complete sequence Length = 197288 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 taaaaaagaggtttgtttgt 66 |||||||||||||||||||| Sbjct: 76877 taaaaaagaggtttgtttgt 76858
>gb|U80983.1|HSU80983 Homo sapiens phospholipase C-gamma 1 gene, promoter region and partial cds Length = 1048 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 ggcccggcggccggcgcgtc 140 |||||||||||||||||||| Sbjct: 572 ggcccggcggccggcgcgtc 553
>dbj|AB231868.1| Nematostella vectensis genes for zinc finger proteins Nv-ZicB, Nv-ZicC, Nv-ZicD, Nv-ZicE, complete cds Length = 177971 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 ataaaaaagaggtttgtttg 65 |||||||||||||||||||| Sbjct: 163821 ataaaaaagaggtttgtttg 163802
>gb|DQ297143.1| Homo sapiens phospholipase C, gamma 1 (PLCG1) gene, complete cds Length = 42144 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 ggcccggcggccggcgcgtc 140 |||||||||||||||||||| Sbjct: 1673 ggcccggcggccggcgcgtc 1654 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,330,854 Number of Sequences: 3902068 Number of extensions: 1330854 Number of successful extensions: 33987 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31331 Number of HSP's gapped (non-prelim): 2650 length of query: 229 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 207 effective length of database: 17,147,199,772 effective search space: 3549470352804 effective search space used: 3549470352804 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
