>JHD1_EMENI (Q5AW75) JmjC domain-containing histone demethylation protein 1 (EC|
           1.14.11.-)
          Length = 1407

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 18/32 (56%), Positives = 20/32 (62%)
 Frame = -3

Query: 125 PHGRPPRRSIHDADQRREGAVEEAVVLRLSER 30
           P GRP RRS  +AD +R  A E   V RLSER
Sbjct: 901 PAGRPSRRSERNADNQRTYA-ERQAVQRLSER 931

>Y146_RICPR (Q9ZE16) Hypothetical protein RP146|
          Length = 612

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 194 QAVVGEEDGADELVGHQAAQYLDPHGRPPRRSIHDADQR 78
           QA+    DG  EL+G    Q+L  H R P+  + +AD++
Sbjct: 223 QAITDRRDGVQELIGSTMYQFL-LHDRAPKEGLVNADEQ 260

>ARAD_SALTY (P06190) L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)|
           (Phosphoribulose isomerase)
          Length = 231

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 30  PFAQAKHHRLLHRPFPPLVGVVD*SPRRAAMWVE 131
           P +    HRLL++ FP + G+V    R A +W +
Sbjct: 73  PSSDTPTHRLLYQAFPTIGGIVHTHSRHATIWAQ 106

>ARAD_ECOLI (P08203) L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)|
           (Phosphoribulose isomerase)
          Length = 231

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 30  PFAQAKHHRLLHRPFPPLVGVVD*SPRRAAMWVE 131
           P +    HRLL++ FP + G+V    R A +W +
Sbjct: 73  PSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQ 106

>FMN2_MOUSE (Q9JL04) Formin-2|
          Length = 1567

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 22/91 (24%), Positives = 38/91 (41%)
 Frame = -3

Query: 278 AAAIELLEPGCDGEAEIGVGGVKAGELVQAVVGEEDGADELVGHQAAQYLDPHGRPPRRS 99
           A   E++ PG    AE GVG     E ++   G +DG     G     Y          S
Sbjct: 132 ADPFEVIHPGASRPAEAGVGIQATAEDLETAAGAQDGQRTSSGSDTDIY----------S 181

Query: 98  IHDADQRREGAVEEAVVLRLSERRRRFGLLR 6
            H A ++ +   +    +RL +++++  LL+
Sbjct: 182 FHSATEQEDLLSDIQQAIRLQQQQQQKLLLQ 212

>YMT6_YEAST (Q04215) Transposon Ty1 protein A|
          Length = 440

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -1

Query: 262 FSSLAATAKQRSEWEESRPASWSRPSSEKKTARMSL*ATRPHSISTHMAARRGDQSTT 89
           FS + +  +++ E + ++      PS EKK +R     T+P SI+ +       QS T
Sbjct: 340 FSDIHSMYEEQQESKRNKSTHRRSPSDEKKDSRTYTNTTKPKSITRNSQKPNNSQSRT 397

>PHOS_MOUSE (Q9QW08) Phosducin (PHD) (33 kDa phototransducing protein) (Rod|
           photoreceptor 1) (RPR-1)
          Length = 244

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 212 KAGELVQAVVG-EEDGADELVGHQAAQYLDPHGRPPRRSIHDADQ 81
           K GEL+   +   E  A+E        +L+ +G  P R IHD +Q
Sbjct: 191 KGGELISNFISVAEQFAEEFFAVDVESFLNEYGLLPEREIHDLEQ 235

>UVRC_XANC5 (Q3BTC3) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 619

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
 Frame = -3

Query: 176 EDGADELVGHQAAQYLDPHGRPPRRSIHD--------ADQRREGAVEEAVVLRLSERRRR 21
           ED ADE++G   +QY   H  PPR  + D         +     A E  V L+ + R  R
Sbjct: 292 EDSADEILGAFVSQYYAEHS-PPREILLDREIPEAELIEAALSTAAEHKVALKWNVRGER 350

Query: 20  FGLL 9
            G L
Sbjct: 351 AGYL 354

>UVRC_XANOR (Q5H0H5) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 618

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
 Frame = -3

Query: 176 EDGADELVGHQAAQYLDPHGRPPRRSIHD--------ADQRREGAVEEAVVLRLSERRRR 21
           ED ADE++G   +QY   H  PPR  + D         +     A E  V L+ + R  R
Sbjct: 292 EDSADEILGAFVSQYYAEHS-PPREILLDREIPETELIEAALSTAAEHKVALKWNVRGER 350

Query: 20  FGLL 9
            G L
Sbjct: 351 AGYL 354

>ATG2_EMENI (Q5B1T9) Autophagy-related protein 2|
          Length = 2102

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -3

Query: 263 LLEPGCDGEAEIGVGGVKAGELVQAVVGEEDGADELVGHQAAQYLDPHGRPPRRSI 96
           L +   +G  +I  G +K G+  Q+       +   +G QA   +DPH R    S+
Sbjct: 395 LQDDDSEGLGDIQPGDIKPGDSNQSYTDRSTPSQPSLGFQAPALVDPHSRSGDHSV 450

>Y188_RICCN (Q92J81) Hypothetical protein RC0188|
          Length = 704

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 194 QAVVGEEDGADELVGHQAAQYLDPHGRPPRRSIHDADQR 78
           QA+    DG  EL+G    Q+L  H R P+  +  AD++
Sbjct: 201 QAMADRRDGVQELIGSTMYQFL-LHDRAPKEGLVTADEQ 238

>E2AK4_MOUSE (Q9QZ05) Eukaryotic translation initiation factor 2-alpha kinase 4|
           (EC 2.7.11.1) (GCN2-like protein) (mGCN2)
          Length = 1648

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -3

Query: 155 VGHQAAQYLDPHGRPPRRSIHDADQRREGAVEEAVVLRLSERRRR 21
           + H    +L  H +PP +S H+    R+   ++    RL E RR+
Sbjct: 126 LAHHVQSFLSEHNKPPPKSFHEEMLERQAQEKQQ---RLLEARRK 167

>PHOS_CANFA (O77560) Phosducin (PHD) (33 kDa phototransducing protein)|
          Length = 245

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -3

Query: 212 KAGELVQAVVG-EEDGADELVGHQAAQYLDPHGRPPRRSIHDADQ 81
           K GEL+   +   E  A+E        +L+ +G  P R IH  DQ
Sbjct: 193 KGGELISNFISVTEQFAEEFFAGDVESFLNEYGLLPEREIHALDQ 237

>PHP_DROME (P39769) Polyhomeotic-proximal chromatin protein|
          Length = 1589

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 254  PGCDGEAEIGVGGVKAGELVQAVVGEEDGADEL 156
            PGC  +A+ G+GGV +GE      G   G D +
Sbjct: 1385 PGCSRQAKNGIGGVGSGETNGLGTGGIVGVDAM 1417

>SLAPM_BREBE (P06546) Middle cell wall protein precursor (MWP)|
          Length = 1053

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 153 YKLIRAVFFSDDGLDQLAGLDSSHSDLCFAVAARLEKLY 269
           Y++     FSDDG   +  +D  H DL  ++     KLY
Sbjct: 518 YRVYEGATFSDDGNKDVQDIDKDHWDLVDSLDDETVKLY 556

>GATB_ENTFA (Q837V2) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B|
           (EC 6.3.5.-) (Asp/Glu-ADT subunit B)
          Length = 476

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = -3

Query: 251 GCDGEAEIGVGGVKAGELVQAVVGEEDGADELVGHQAAQYLD--PHGRPPRRSIHDADQR 78
           G DG  EI V G K    ++ V  EED    + G     Y+D    G P    + +AD R
Sbjct: 100 GHDGWIEIEVEGKKKKIRIERVHLEEDAGKNIHGTDGYSYVDLNRQGTPLIEIVSEADMR 159

>SOS1_HUMAN (Q07889) Son of sevenless homolog 1 (SOS-1)|
          Length = 1333

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +3

Query: 21   PPPPFAQAKHHRLLHRPFPPLVGVVD 98
            PPPP   + H    H P PPL   VD
Sbjct: 1258 PPPPQTPSPHGTRRHLPSPPLTQEVD 1283


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,182,115
Number of Sequences: 219361
Number of extensions: 540790
Number of successful extensions: 2343
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2333
length of database: 80,573,946
effective HSP length: 68
effective length of database: 65,657,398
effective search space used: 1575777552
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)