ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet52e03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK119522.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 4e-58
2dbj|AK119220.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 4e-58
3dbj|AK104690.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 4e-58
4dbj|AK103994.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 4e-58
5dbj|AK103932.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 4e-58
6dbj|AK103922.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 4e-58
7dbj|AK071685.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 4e-58
8ref|XM_472744.1| Oryza sativa (japonica cultivar-group), predic... 224 9e-56
9gb|AY103602.1| Zea mays PCO093211 mRNA sequence 200 1e-48
10dbj|AK067817.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 8e-47
11emb|X07157.1|ZMCHGADP Maize cytosolic mRNA for subunit A of chlo... 192 3e-46
12gb|M31481.1|MZENAR1 Maize glyceraldehyde-3-phosphate dehydrogena... 176 2e-41
13gb|AF022730.1|AF022730 Oryza sativa glyceralehyde-3-phosphate de... 155 7e-35
14emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4,... 141 1e-30
15emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromosome 4,... 141 1e-30
16dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 141 1e-30
17emb|X15408.1|ZMGPA1 Maize Gpa1 gene for glyceraldehyde-3-phospha... 123 3e-25
18gb|M18976.1|MZEG3PD Zea mays chloroplast glyceraldehyde-3-phosph... 123 3e-25
19emb|X15406.1|ZMPGPA1 Maize pseudo-Gpa1 pseudogene for glyceralde... 109 4e-21
20emb|X15407.1|ZMPGPA2 Maize pseudo-Gpa2 pseudogene for glyceralde... 90 4e-15
21gb|AY103974.1| Zea mays PCO123560 mRNA sequence 50 0.003
22ref|XM_493811.1| Oryza sativa (japonica cultivar-group), predic... 46 0.047
23gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.047
24gb|AC099739.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.047
25gb|AC144426.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.047
26dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.047
27dbj|AK067755.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.047
28dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.047
29gb|DQ230532.1| Streptomyces sp. Tu6071 phenalinolactone biosynth... 44 0.19
30gb|AY450985.1| HIV-1 isolate NN92/732 from USA tat protein (tat)... 42 0.74
31gb|AY450984.1| HIV-1 isolate NN88/732 from USA tat protein (tat)... 42 0.74
32gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 42 0.74
33gb|U43999.1|HIVU43999 Human immunodeficiency virus type 1 tat mR... 42 0.74
34ref|XM_483629.1| Oryza sativa (japonica cultivar-group), mRNA 40 2.9
35gb|AY734209.1| HIV-1 isolate E089BB from USA tat protein (tat) g... 40 2.9
36gb|AY734165.1| HIV-1 isolate E055BB from USA tat protein (tat) g... 40 2.9
37gb|AY734164.1| HIV-1 isolate B055BB from USA tat protein (tat) g... 40 2.9
38gb|AY734163.1| HIV-1 isolate E055AA from USA tat protein (tat) g... 40 2.9
39gb|AY734162.1| HIV-1 isolate B055AA from USA tat protein (tat) g... 40 2.9
40gb|DQ396398.1| HIV-1 isolate 03ZAPS045MB2 from South Africa, com... 40 2.9
41gb|AY450998.1| HIV-1 isolate SS90/26 from USA tat protein (tat) ... 40 2.9
42gb|AY450969.1| HIV-1 isolate AE96/999260 from USA tat protein (t... 40 2.9
43emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete ... 40 2.9
44emb|BX640417.1| Bordetella pertussis strain Tohama I, complete g... 40 2.9
45gb|AC023296.6| Homo sapiens chromosome 8, clone RP11-564K14, com... 40 2.9
46gb|L81176.2|PSEFLAOP Pseudomonas aeruginosa flagellin (fliC) gen... 40 2.9
47gb|AF408629.1| HIV-1 isolate A32879 from Argentina, complete genome 40 2.9
48gb|AY713412.1| HIV-1 isolate 90US_873 from USA gag protein (gag)... 40 2.9
49dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.9
50gb|AF326484.1|AF326484 Zea mays NOD26-like membrane integral pro... 40 2.9
51gb|AY857182.2| HIV-1 isolate 9762120 from Australia, partial genome 40 2.9
52dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.9
53gb|AF139825.1|AF139825 Pseudomonas aeruginosa strain PA103 flage... 40 2.9
54gb|AF139824.1|AF139824 Pseudomonas aeruginosa strain PAK flagell... 40 2.9
55gb|AF139823.1|AF139823 Pseudomonas aeruginosa strain cs2 flagell... 40 2.9
56gb|AF139822.1|AF139822 Pseudomonas aeruginosa strain cs32 flagel... 40 2.9
57gb|AY835778.1| HIV-1 isolate 5018-86 clone pbf6 from USA, comple... 40 2.9
58gb|AY835777.1| HIV-1 isolate 5018-83 clone pbf4 from USA, comple... 40 2.9
59gb|U80572.1|HIVU80572 HIV-1 patient TPVIII, sample 1995, tat pro... 40 2.9
60gb|U80555.1|HIVU80555 HIV-1 patient LTS16, sample 1995, tat prot... 40 2.9
61gb|AF000525.1|AF000525 HIV-1 strain CH94-A2tat from USA, Tat pro... 40 2.9
62gb|AF000522.1|AF000522 HIV-1 strain AD93-A3tat from USA, Tat pro... 40 2.9
63gb|U44018.1|HIVU44018 Human immunodeficiency virus type 1 tat mR... 40 2.9
64gb|U44017.1|HIVU44017 Human immunodeficiency virus type 1 tat mR... 40 2.9
65gb|U44012.1|HIVU44012 Human immunodeficiency virus type 1 tat mR... 40 2.9
66gb|U44011.1|HIVU44011 Human immunodeficiency virus type 1 tat mR... 40 2.9
67gb|U44009.1|HIVU44009 Human immunodeficiency virus type 1 tat mR... 40 2.9
68gb|U44008.1|HIVU44008 Human immunodeficiency virus type 1 tat mR... 40 2.9
69gb|U44002.1|HIVU44002 Human immunodeficiency virus type 1 tat mR... 40 2.9
70gb|U44001.1|HIVU44001 Human immunodeficiency virus type 1 tat mR... 40 2.9
71gb|U44000.1|HIVU44000 Human immunodeficiency virus type 1 tat mR... 40 2.9
72gb|U43998.1|HIVU43998 Human immunodeficiency virus type 1 tat mR... 40 2.9
73gb|U80472.1|HIVU80472 HIV-1 patient VE12 from Venezuela, sample ... 40 2.9
74dbj|D21159.1|RICASP1 Rice Osg4B gene for anther specific protein... 40 2.9 
>dbj|AK119522.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-D11, full
           insert sequence
          Length = 1468

 Score =  232 bits (117), Expect = 4e-58
 Identities = 196/222 (88%), Gaps = 4/222 (1%)
 Strand = Plus / Plus

                                                                       
Query: 11  ggacatggcgtcgcccatgctctccacggccatggcgccactccgggg----ggcatgct 66
           ||||||||||||||||||||||||| | ||||  | |||||||| |||    ||| ||  
Sbjct: 33  ggacatggcgtcgcccatgctctccgccgccaccgtgccactccagggaggcggcttgtc 92

                                                                       
Query: 67  ggagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccga 126
           |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 93  ggagttctccggcctgaggagctcgtcgtcgctgccgctgcggcggaatgccacctccga 152

                                                                       
Query: 127 cgacttcatgtccgccgtctccttcaggacatacgcggtgagcacgagcggcgggtcgcg 186
           ||||||||||  ||| ||||||||||||||  |||||||  |||||||||||||| ||||
Sbjct: 153 cgacttcatgaacgcggtctccttcaggacccacgcggttggcacgagcggcggggcgcg 212

                                                     
Query: 187 gaaggcgccgacggaggcgaagctcaaggtggcgatcaacgg 228
           |  ||||||||||||||||||||| |||||||||||||||||
Sbjct: 213 gcgggcgccgacggaggcgaagctgaaggtggcgatcaacgg 254
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>dbj|AK119220.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-H03, full
           insert sequence
          Length = 1366

 Score =  232 bits (117), Expect = 4e-58
 Identities = 196/222 (88%), Gaps = 4/222 (1%)
 Strand = Plus / Plus

                                                                       
Query: 11  ggacatggcgtcgcccatgctctccacggccatggcgccactccgggg----ggcatgct 66
           ||||||||||||||||||||||||| | ||||  | |||||||| |||    ||| ||  
Sbjct: 33  ggacatggcgtcgcccatgctctccgccgccaccgtgccactccagggaggcggcttgtc 92

                                                                       
Query: 67  ggagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccga 126
           |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 93  ggagttctccggcctgaggagctcgtcgtcgctgccgctgcggcggaatgccacctccga 152

                                                                       
Query: 127 cgacttcatgtccgccgtctccttcaggacatacgcggtgagcacgagcggcgggtcgcg 186
           ||||||||||  ||| ||||||||||||||  |||||||  |||||||||||||| ||||
Sbjct: 153 cgacttcatgaacgcggtctccttcaggacccacgcggttggcacgagcggcggggcgcg 212

                                                     
Query: 187 gaaggcgccgacggaggcgaagctcaaggtggcgatcaacgg 228
           |  ||||||||||||||||||||| |||||||||||||||||
Sbjct: 213 gcgggcgccgacggaggcgaagctgaaggtggcgatcaacgg 254
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>dbj|AK104690.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-G03, full
           insert sequence
          Length = 1540

 Score =  232 bits (117), Expect = 4e-58
 Identities = 196/222 (88%), Gaps = 4/222 (1%)
 Strand = Plus / Plus

                                                                       
Query: 11  ggacatggcgtcgcccatgctctccacggccatggcgccactccgggg----ggcatgct 66
           ||||||||||||||||||||||||| | ||||  | |||||||| |||    ||| ||  
Sbjct: 38  ggacatggcgtcgcccatgctctccgccgccaccgtgccactccagggaggcggcttgtc 97

                                                                       
Query: 67  ggagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccga 126
           |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 98  ggagttctccggcctgaggagctcgtcgtcgctgccgctgcggcggaatgccacctccga 157

                                                                       
Query: 127 cgacttcatgtccgccgtctccttcaggacatacgcggtgagcacgagcggcgggtcgcg 186
           ||||||||||  ||| ||||||||||||||  |||||||  |||||||||||||| ||||
Sbjct: 158 cgacttcatgaacgcggtctccttcaggacccacgcggttggcacgagcggcggggcgcg 217

                                                     
Query: 187 gaaggcgccgacggaggcgaagctcaaggtggcgatcaacgg 228
           |  ||||||||||||||||||||| |||||||||||||||||
Sbjct: 218 gcgggcgccgacggaggcgaagctgaaggtggcgatcaacgg 259
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>dbj|AK103994.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-F06, full
           insert sequence
          Length = 1538

 Score =  232 bits (117), Expect = 4e-58
 Identities = 196/222 (88%), Gaps = 4/222 (1%)
 Strand = Plus / Plus

                                                                       
Query: 11  ggacatggcgtcgcccatgctctccacggccatggcgccactccgggg----ggcatgct 66
           ||||||||||||||||||||||||| | ||||  | |||||||| |||    ||| ||  
Sbjct: 38  ggacatggcgtcgcccatgctctccgccgccaccgtgccactccagggaggcggcttgtc 97

                                                                       
Query: 67  ggagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccga 126
           |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 98  ggagttctccggcctgaggagctcgtcgtcgctgccgctgcggcggaatgccacctccga 157

                                                                       
Query: 127 cgacttcatgtccgccgtctccttcaggacatacgcggtgagcacgagcggcgggtcgcg 186
           ||||||||||  ||| ||||||||||||||  |||||||  |||||||||||||| ||||
Sbjct: 158 cgacttcatgaacgcggtctccttcaggacccacgcggttggcacgagcggcggggcgcg 217

                                                     
Query: 187 gaaggcgccgacggaggcgaagctcaaggtggcgatcaacgg 228
           |  ||||||||||||||||||||| |||||||||||||||||
Sbjct: 218 gcgggcgccgacggaggcgaagctgaaggtggcgatcaacgg 259
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>dbj|AK103932.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E09, full
           insert sequence
          Length = 1566

 Score =  232 bits (117), Expect = 4e-58
 Identities = 196/222 (88%), Gaps = 4/222 (1%)
 Strand = Plus / Plus

                                                                       
Query: 11  ggacatggcgtcgcccatgctctccacggccatggcgccactccgggg----ggcatgct 66
           ||||||||||||||||||||||||| | ||||  | |||||||| |||    ||| ||  
Sbjct: 38  ggacatggcgtcgcccatgctctccgccgccaccgtgccactccagggaggcggcttgtc 97

                                                                       
Query: 67  ggagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccga 126
           |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 98  ggagttctccggcctgaggagctcgtcgtcgctgccgctgcggcggaatgccacctccga 157

                                                                       
Query: 127 cgacttcatgtccgccgtctccttcaggacatacgcggtgagcacgagcggcgggtcgcg 186
           ||||||||||  ||| ||||||||||||||  |||||||  |||||||||||||| ||||
Sbjct: 158 cgacttcatgaacgcggtctccttcaggacccacgcggttggcacgagcggcggggcgcg 217

                                                     
Query: 187 gaaggcgccgacggaggcgaagctcaaggtggcgatcaacgg 228
           |  ||||||||||||||||||||| |||||||||||||||||
Sbjct: 218 gcgggcgccgacggaggcgaagctgaaggtggcgatcaacgg 259
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>dbj|AK103922.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B10, full
           insert sequence
          Length = 1473

 Score =  232 bits (117), Expect = 4e-58
 Identities = 196/222 (88%), Gaps = 4/222 (1%)
 Strand = Plus / Plus

                                                                       
Query: 11  ggacatggcgtcgcccatgctctccacggccatggcgccactccgggg----ggcatgct 66
           ||||||||||||||||||||||||| | ||||  | |||||||| |||    ||| ||  
Sbjct: 38  ggacatggcgtcgcccatgctctccgccgccaccgtgccactccagggaggcggcttgtc 97

                                                                       
Query: 67  ggagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccga 126
           |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 98  ggagttctccggcctgaggagctcgtcgtcgctgccgctgcggcggaatgccacctccga 157

                                                                       
Query: 127 cgacttcatgtccgccgtctccttcaggacatacgcggtgagcacgagcggcgggtcgcg 186
           ||||||||||  ||| ||||||||||||||  |||||||  |||||||||||||| ||||
Sbjct: 158 cgacttcatgaacgcggtctccttcaggacccacgcggttggcacgagcggcggggcgcg 217

                                                     
Query: 187 gaaggcgccgacggaggcgaagctcaaggtggcgatcaacgg 228
           |  ||||||||||||||||||||| |||||||||||||||||
Sbjct: 218 gcgggcgccgacggaggcgaagctgaaggtggcgatcaacgg 259
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>dbj|AK071685.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108H17, full
           insert sequence
          Length = 1571

 Score =  232 bits (117), Expect = 4e-58
 Identities = 196/222 (88%), Gaps = 4/222 (1%)
 Strand = Plus / Plus

                                                                       
Query: 11  ggacatggcgtcgcccatgctctccacggccatggcgccactccgggg----ggcatgct 66
           ||||||||||||||||||||||||| | ||||  | |||||||| |||    ||| ||  
Sbjct: 34  ggacatggcgtcgcccatgctctccgccgccaccgtgccactccagggaggcggcttgtc 93

                                                                       
Query: 67  ggagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccga 126
           |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 94  ggagttctccggcctgaggagctcgtcgtcgctgccgctgcggcggaatgccacctccga 153

                                                                       
Query: 127 cgacttcatgtccgccgtctccttcaggacatacgcggtgagcacgagcggcgggtcgcg 186
           ||||||||||  ||| ||||||||||||||  |||||||  |||||||||||||| ||||
Sbjct: 154 cgacttcatgaacgcggtctccttcaggacccacgcggttggcacgagcggcggggcgcg 213

                                                     
Query: 187 gaaggcgccgacggaggcgaagctcaaggtggcgatcaacgg 228
           |  ||||||||||||||||||||| |||||||||||||||||
Sbjct: 214 gcgggcgccgacggaggcgaagctgaaggtggcgatcaacgg 255
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>ref|XM_472744.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1209

 Score =  224 bits (113), Expect = 9e-56
 Identities = 192/218 (88%), Gaps = 4/218 (1%)
 Strand = Plus / Plus

                                                                       
Query: 15  atggcgtcgcccatgctctccacggccatggcgccactccgggg----ggcatgctggag 70
           ||||||||||||||||||||| | ||||  | |||||||| |||    ||| ||  ||||
Sbjct: 1   atggcgtcgcccatgctctccgccgccaccgtgccactccagggaggcggcttgtcggag 60

                                                                       
Query: 71  ttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccgacgac 130
           |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 61  ttctccggcctgaggagctcgtcgtcgctgccgctgcggcggaatgccacctccgacgac 120

                                                                       
Query: 131 ttcatgtccgccgtctccttcaggacatacgcggtgagcacgagcggcgggtcgcggaag 190
           ||||||  ||| ||||||||||||||  |||||||  |||||||||||||| |||||  |
Sbjct: 121 ttcatgaacgcggtctccttcaggacccacgcggttggcacgagcggcggggcgcggcgg 180

                                                 
Query: 191 gcgccgacggaggcgaagctcaaggtggcgatcaacgg 228
           |||||||||||||||||||| |||||||||||||||||
Sbjct: 181 gcgccgacggaggcgaagctgaaggtggcgatcaacgg 218
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>gb|AY103602.1| Zea mays PCO093211 mRNA sequence
          Length = 1490

 Score =  200 bits (101), Expect = 1e-48
 Identities = 146/161 (90%)
 Strand = Plus / Plus

                                                                       
Query: 68  gagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccgac 127
           |||||||||||||| ||||||||  ||||||||||  | || ||||||||||||||||||
Sbjct: 91  gagttctccgggctcaggagctccgcgtcgctgcccatgcgccggaatgccacctccgac 150

                                                                       
Query: 128 gacttcatgtccgccgtctccttcaggacatacgcggtgagcacgagcggcgggtcgcgg 187
           |||||||||||||||||||||||||||||  |||||||  ||||||||||||||||||||
Sbjct: 151 gacttcatgtccgccgtctccttcaggacccacgcggtcggcacgagcggcgggtcgcgg 210

                                                    
Query: 188 aaggcgccgacggaggcgaagctcaaggtggcgatcaacgg 228
             ||||||||||||||||||||| |||||||| ||||||||
Sbjct: 211 cgggcgccgacggaggcgaagctgaaggtggccatcaacgg 251
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>dbj|AK067817.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116O22, full
           insert sequence
          Length = 778

 Score =  194 bits (98), Expect = 8e-47
 Identities = 174/199 (87%), Gaps = 4/199 (2%)
 Strand = Plus / Plus

                                                                       
Query: 11  ggacatggcgtcgcccatgctctccacggccatggcgccactccgggg----ggcatgct 66
           ||||||||||||||||||||||||| | ||||  | |||||||| |||    ||| ||  
Sbjct: 39  ggacatggcgtcgcccatgctctccgccgccaccgtgccactccagggaggcggcttgtc 98

                                                                       
Query: 67  ggagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccga 126
           |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 99  ggagttctccggcctgaggagctcgtcgtcgctgccgctgcggcggaatgccacctccga 158

                                                                       
Query: 127 cgacttcatgtccgccgtctccttcaggacatacgcggtgagcacgagcggcgggtcgcg 186
           ||||||||||  ||| ||||||||||||||  |||||||  |||||||||||||| ||||
Sbjct: 159 cgacttcatgaacgcggtctccttcaggacccacgcggttggcacgagcggcggggcgcg 218

                              
Query: 187 gaaggcgccgacggaggcg 205
           |  ||||||||||||||||
Sbjct: 219 gcgggcgccgacggaggcg 237
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>emb|X07157.1|ZMCHGADP Maize cytosolic mRNA for subunit A of chloroplast GAPDH (GapA)
           glyceraldehyde-3-phosphate dehydrogenase
          Length = 1382

 Score =  192 bits (97), Expect = 3e-46
 Identities = 145/161 (90%)
 Strand = Plus / Plus

                                                                       
Query: 68  gagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccgac 127
           |||||||||||||| ||||||||  ||||||||||  | || ||||||||||||||||||
Sbjct: 1   gagttctccgggctcaggagctccgcgtcgctgcccatgcgccggaatgccacctccgac 60

                                                                       
Query: 128 gacttcatgtccgccgtctccttcaggacatacgcggtgagcacgagcggcgggtcgcgg 187
           |||||||||||||||||||||||||||||  |||||||  |||||||||||||| |||||
Sbjct: 61  gacttcatgtccgccgtctccttcaggacccacgcggtcggcacgagcggcgggccgcgg 120

                                                    
Query: 188 aaggcgccgacggaggcgaagctcaaggtggcgatcaacgg 228
             ||||||||||||||||||||| |||||||| ||||||||
Sbjct: 121 cgggcgccgacggaggcgaagctgaaggtggccatcaacgg 161
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>gb|M31481.1|MZENAR1 Maize glyceraldehyde-3-phosphate dehydrogenase mRNA, 5' end
          Length = 386

 Score =  176 bits (89), Expect = 2e-41
 Identities = 143/161 (88%)
 Strand = Plus / Plus

                                                                       
Query: 68  gagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccgac 127
           |||||||||||||| ||||||||  ||||||||||  | || ||||||||||||||||||
Sbjct: 72  gagttctccgggctcaggagctccgcgtcgctgcccatgcgccggaatgccacctccgac 131

                                                                       
Query: 128 gacttcatgtccgccgtctccttcaggacatacgcggtgagcacgagcggcgggtcgcgg 187
           |||||||||||||||||||||||||||||  |||||||  | |||||||||||| |||||
Sbjct: 132 gacttcatgtccgccgtctccttcaggacccacgcggtcggtacgagcggcgggccgcgg 191

                                                    
Query: 188 aaggcgccgacggaggcgaagctcaaggtggcgatcaacgg 228
             ||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 192 cgggcgccgacggaggcaaagctgaaggtggccatcaacgg 232
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>gb|AF022730.1|AF022730 Oryza sativa glyceralehyde-3-phosphate dehydrogenase subunit
           (GAPDH) mRNA, partial cds
          Length = 1073

 Score =  155 bits (78), Expect = 7e-35
 Identities = 138/158 (87%)
 Strand = Plus / Plus

                                                                       
Query: 71  ttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccgacgac 130
           |||||||| |||||||||||||||||||||||||| |||||| |||||||||||||| ||
Sbjct: 105 ttctccggcctgaggagctcgtcgtcgctgccgctgcggcgggatgccacctccgacaac 164

                                                                       
Query: 131 ttcatgtccgccgtctccttcaggacatacgcggtgagcacgagcggcgggtcgcggaag 190
           ||||||  | | ||||||||||||||  |||||||  |||||| ||||||| |||||  |
Sbjct: 165 ttcatgaacccggtctccttcaggacccacgcggttggcacgaacggcggggcgcggcgg 224

                                                 
Query: 191 gcgccgacggaggcgaagctcaaggtggcgatcaacgg 228
           ||||| |||||||| || || |||||||||||||||||
Sbjct: 225 gcgcccacggaggcaaaactgaaggtggcgatcaacgg 262
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>emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B21,
              complete sequence
          Length = 138969

 Score =  141 bits (71), Expect = 1e-30
 Identities = 92/99 (92%)
 Strand = Plus / Plus

                                                                          
Query: 67     ggagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccga 126
              |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 120791 ggagttctccggcctgaggagctcgtcgtcgctgccgctgcggcggaatgccacctccga 120850

                                                     
Query: 127    cgacttcatgtccgccgtctccttcaggacatacgcggt 165
              ||||||||||  ||| ||||||||||||||  |||||||
Sbjct: 120851 cgacttcatgaacgcggtctccttcaggacccacgcggt 120889



 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 57/61 (93%)
 Strand = Plus / Plus

                                                                          
Query: 168    gcacgagcggcgggtcgcggaaggcgccgacggaggcgaagctcaaggtggcgatcaacg 227
              |||||||||||||| |||||  ||||||||||||||||||||| ||||||||||||||||
Sbjct: 120991 gcacgagcggcggggcgcggcgggcgccgacggaggcgaagctgaaggtggcgatcaacg 121050

               
Query: 228    g 228
              |
Sbjct: 121051 g 121051



 Score = 50.1 bits (25), Expect = 0.003
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 11     ggacatggcgtcgcccatgctctcc 35
              |||||||||||||||||||||||||
Sbjct: 120634 ggacatggcgtcgcccatgctctcc 120658
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>emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072F16,
            complete sequence
          Length = 176383

 Score =  141 bits (71), Expect = 1e-30
 Identities = 92/99 (92%)
 Strand = Plus / Plus

                                                                        
Query: 67   ggagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccga 126
            |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 6472 ggagttctccggcctgaggagctcgtcgtcgctgccgctgcggcggaatgccacctccga 6531

                                                   
Query: 127  cgacttcatgtccgccgtctccttcaggacatacgcggt 165
            ||||||||||  ||| ||||||||||||||  |||||||
Sbjct: 6532 cgacttcatgaacgcggtctccttcaggacccacgcggt 6570



 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 57/61 (93%)
 Strand = Plus / Plus

                                                                        
Query: 168  gcacgagcggcgggtcgcggaaggcgccgacggaggcgaagctcaaggtggcgatcaacg 227
            |||||||||||||| |||||  ||||||||||||||||||||| ||||||||||||||||
Sbjct: 6672 gcacgagcggcggggcgcggcgggcgccgacggaggcgaagctgaaggtggcgatcaacg 6731

             
Query: 228  g 228
            |
Sbjct: 6732 g 6732



 Score = 50.1 bits (25), Expect = 0.003
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                     
Query: 11   ggacatggcgtcgcccatgctctcc 35
            |||||||||||||||||||||||||
Sbjct: 6315 ggacatggcgtcgcccatgctctcc 6339
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  141 bits (71), Expect = 1e-30
 Identities = 92/99 (92%)
 Strand = Plus / Plus

                                                                            
Query: 67       ggagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccga 126
                |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 22912016 ggagttctccggcctgaggagctcgtcgtcgctgccgctgcggcggaatgccacctccga 22912075

                                                       
Query: 127      cgacttcatgtccgccgtctccttcaggacatacgcggt 165
                ||||||||||  ||| ||||||||||||||  |||||||
Sbjct: 22912076 cgacttcatgaacgcggtctccttcaggacccacgcggt 22912114



 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 57/61 (93%)
 Strand = Plus / Plus

                                                                            
Query: 168      gcacgagcggcgggtcgcggaaggcgccgacggaggcgaagctcaaggtggcgatcaacg 227
                |||||||||||||| |||||  ||||||||||||||||||||| ||||||||||||||||
Sbjct: 22912216 gcacgagcggcggggcgcggcgggcgccgacggaggcgaagctgaaggtggcgatcaacg 22912275

                 
Query: 228      g 228
                |
Sbjct: 22912276 g 22912276



 Score = 50.1 bits (25), Expect = 0.003
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                         
Query: 11       ggacatggcgtcgcccatgctctcc 35
                |||||||||||||||||||||||||
Sbjct: 22911859 ggacatggcgtcgcccatgctctcc 22911883
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>emb|X15408.1|ZMGPA1 Maize Gpa1 gene for glyceraldehyde-3-phosphate dehydrogenase subunit
            A
          Length = 6414

 Score =  123 bits (62), Expect = 3e-25
 Identities = 89/98 (90%)
 Strand = Plus / Plus

                                                                        
Query: 68   gagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccgac 127
            |||||||||||||| ||||||||  ||||||||||  | || ||||||||||||||||||
Sbjct: 1703 gagttctccgggctcaggagctccgcgtcgctgcccatgcgccggaatgccacctccgac 1762

                                                  
Query: 128  gacttcatgtccgccgtctccttcaggacatacgcggt 165
            |||||||||||||||||||||||||||||  |||||||
Sbjct: 1763 gacttcatgtccgccgtctccttcaggacccacgcggt 1800



 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                      
Query: 168  gcacgagcggcgggtcgcggaaggcgccgacggaggcgaagctcaaggtggcgatcaa 225
            |||||||||||||| |||||  ||||||||||||||||||||| |||||||| |||||
Sbjct: 1985 gcacgagcggcgggccgcggcgggcgccgacggaggcgaagctgaaggtggccatcaa 2042
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>gb|M18976.1|MZEG3PD Zea mays chloroplast glyceraldehyde-3-phosphate dehydrogenase gene,
            complete cds, clone lambda-gapA1
          Length = 6414

 Score =  123 bits (62), Expect = 3e-25
 Identities = 89/98 (90%)
 Strand = Plus / Plus

                                                                        
Query: 68   gagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccgac 127
            |||||||||||||| ||||||||  ||||||||||  | || ||||||||||||||||||
Sbjct: 1703 gagttctccgggctcaggagctccgcgtcgctgcccatgcgccggaatgccacctccgac 1762

                                                  
Query: 128  gacttcatgtccgccgtctccttcaggacatacgcggt 165
            |||||||||||||||||||||||||||||  |||||||
Sbjct: 1763 gacttcatgtccgccgtctccttcaggacccacgcggt 1800



 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                      
Query: 168  gcacgagcggcgggtcgcggaaggcgccgacggaggcgaagctcaaggtggcgatcaa 225
            |||||||||||||| |||||  ||||||||||||||||||||| |||||||| |||||
Sbjct: 1985 gcacgagcggcgggccgcggcgggcgccgacggaggcgaagctgaaggtggccatcaa 2042
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>emb|X15406.1|ZMPGPA1 Maize pseudo-Gpa1 pseudogene for glyceraldehyde-3-phosphate
            dehydrogenase subunit A
          Length = 5922

 Score =  109 bits (55), Expect = 4e-21
 Identities = 76/83 (91%)
 Strand = Plus / Plus

                                                                        
Query: 83   aggagctcgtcgtcgctgccgctccggcggaatgccacctccgacgacttcatgtccgcc 142
            ||||||||  ||||||||||| | || |||||||||||||||||||||||||||||||||
Sbjct: 1757 aggagctccgcgtcgctgccgatgcgccggaatgccacctccgacgacttcatgtccgcc 1816

                                   
Query: 143  gtctccttcaggacatacgcggt 165
            ||||||||||||||  |||||||
Sbjct: 1817 gtctccttcaggacccacgcggt 1839



 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                   
Query: 190  ggcgccgacggaggcgaagctcaaggtggcgatcaacgg 228
            |||||||||||||||||||||||||||||| || |||||
Sbjct: 2030 ggcgccgacggaggcgaagctcaaggtggccataaacgg 2068
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>emb|X15407.1|ZMPGPA2 Maize pseudo-Gpa2 pseudogene for glyceraldehyde-3-phosphate
            dehydrogenase subunit A
          Length = 8839

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 66/73 (90%)
 Strand = Plus / Plus

                                                                        
Query: 83   aggagctcgtcgtcgctgccgctccggcggaatgccacctccgacgacttcatgtccgcc 142
            ||||||||  ||||||||||| | ||  ||||||||||||||||||| ||||||||||||
Sbjct: 4928 aggagctccgcgtcgctgccgatgcgctggaatgccacctccgacgaattcatgtccgcc 4987

                         
Query: 143  gtctccttcagga 155
            |||||||||||||
Sbjct: 4988 gtctccttcagga 5000



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                   
Query: 190  ggcgccgacggaggcgaagctcaaggtggcgatcaacgg 228
            ||||||||| ||||| |||||||||||||| ||||||||
Sbjct: 5211 ggcgccgacagaggcaaagctcaaggtggccatcaacgg 5249
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>gb|AY103974.1| Zea mays PCO123560 mRNA sequence
          Length = 1889

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 200 gaggcgaagctcaaggtggcgatcaacgg 228
           ||||||||||| |||||||||||||||||
Sbjct: 479 gaggcgaagctgaaggtggcgatcaacgg 507
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>ref|XM_493811.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1335

 Score = 46.1 bits (23), Expect = 0.047
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 190 ggcgccgacggaggcgaagctcaaggtggcgatcaacgg 228
           ||||||| | ||||||||||||||||| || ||||||||
Sbjct: 213 ggcgccggctgaggcgaagctcaaggttgccatcaacgg 251
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.047
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                      
Query: 190     ggcgccgacggaggcgaagctcaaggtggcgatcaacgg 228
               ||||||| | ||||||||||||||||| || ||||||||
Sbjct: 1643182 ggcgccggctgaggcgaagctcaaggttgccatcaacgg 1643220
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>gb|AC099739.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1528D07,
             complete sequence
          Length = 87592

 Score = 46.1 bits (23), Expect = 0.047
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 190   ggcgccgacggaggcgaagctcaaggtggcgatcaacgg 228
             ||||||| | ||||||||||||||||| || ||||||||
Sbjct: 50628 ggcgccggctgaggcgaagctcaaggttgccatcaacgg 50666
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>gb|AC144426.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1015F07,
              complete sequence
          Length = 127098

 Score = 46.1 bits (23), Expect = 0.047
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                     
Query: 190    ggcgccgacggaggcgaagctcaaggtggcgatcaacgg 228
              ||||||| | ||||||||||||||||| || ||||||||
Sbjct: 122743 ggcgccggctgaggcgaagctcaaggttgccatcaacgg 122781
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.047
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                      
Query: 190     ggcgccgacggaggcgaagctcaaggtggcgatcaacgg 228
               ||||||| | ||||||||||||||||| || ||||||||
Sbjct: 1643180 ggcgccggctgaggcgaagctcaaggttgccatcaacgg 1643218
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>dbj|AK067755.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118G18, full
           insert sequence
          Length = 1668

 Score = 46.1 bits (23), Expect = 0.047
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 190 ggcgccgacggaggcgaagctcaaggtggcgatcaacgg 228
           ||||||| | ||||||||||||||||| || ||||||||
Sbjct: 268 ggcgccggctgaggcgaagctcaaggttgccatcaacgg 306
to top
>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
             clone:P0043E01
          Length = 154128

 Score = 46.1 bits (23), Expect = 0.047
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 190   ggcgccgacggaggcgaagctcaaggtggcgatcaacgg 228
             ||||||| | ||||||||||||||||| || ||||||||
Sbjct: 55645 ggcgccggctgaggcgaagctcaaggttgccatcaacgg 55683
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>gb|DQ230532.1| Streptomyces sp. Tu6071 phenalinolactone biosynthetic gene cluster,
             complete sequence
          Length = 49461

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 198   cggaggcgaagctcaaggtggc 219
             ||||||||||||||||||||||
Sbjct: 40058 cggaggcgaagctcaaggtggc 40037
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>gb|AY450985.1| HIV-1 isolate NN92/732 from USA tat protein (tat) gene, partial
           sequence
          Length = 321

 Score = 42.1 bits (21), Expect = 0.74
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 80  ctgaggagctcgtcgtcgctg 100
           |||||||||||||||||||||
Sbjct: 258 ctgaggagctcgtcgtcgctg 238
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>gb|AY450984.1| HIV-1 isolate NN88/732 from USA tat protein (tat) gene, partial
           sequence
          Length = 321

 Score = 42.1 bits (21), Expect = 0.74
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 80  ctgaggagctcgtcgtcgctg 100
           |||||||||||||||||||||
Sbjct: 258 ctgaggagctcgtcgtcgctg 238
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 42.1 bits (21), Expect = 0.74
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 160     cgcggtgagcacgagcggcgg 180
               |||||||||||||||||||||
Sbjct: 1509597 cgcggtgagcacgagcggcgg 1509577
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>gb|U43999.1|HIVU43999 Human immunodeficiency virus type 1 tat mRNA, partial cds
          Length = 243

 Score = 42.1 bits (21), Expect = 0.74
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 80  ctgaggagctcgtcgtcgctg 100
           |||||||||||||||||||||
Sbjct: 207 ctgaggagctcgtcgtcgctg 187
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>ref|XM_483629.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 528

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 86  agctcgtcgtcgctgccgct 105
           ||||||||||||||||||||
Sbjct: 501 agctcgtcgtcgctgccgct 482
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>gb|AY734209.1| HIV-1 isolate E089BB from USA tat protein (tat) gene, partial cds
          Length = 297

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  tgaggagctcgtcgtcgctg 100
           ||||||||||||||||||||
Sbjct: 211 tgaggagctcgtcgtcgctg 192
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>gb|AY734165.1| HIV-1 isolate E055BB from USA tat protein (tat) gene, partial cds
          Length = 295

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  tgaggagctcgtcgtcgctg 100
           ||||||||||||||||||||
Sbjct: 208 tgaggagctcgtcgtcgctg 189
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>gb|AY734164.1| HIV-1 isolate B055BB from USA tat protein (tat) gene, partial cds
          Length = 292

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  tgaggagctcgtcgtcgctg 100
           ||||||||||||||||||||
Sbjct: 208 tgaggagctcgtcgtcgctg 189
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>gb|AY734163.1| HIV-1 isolate E055AA from USA tat protein (tat) gene, partial cds
          Length = 285

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  tgaggagctcgtcgtcgctg 100
           ||||||||||||||||||||
Sbjct: 198 tgaggagctcgtcgtcgctg 179
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>gb|AY734162.1| HIV-1 isolate B055AA from USA tat protein (tat) gene, partial cds
          Length = 262

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  tgaggagctcgtcgtcgctg 100
           ||||||||||||||||||||
Sbjct: 175 tgaggagctcgtcgtcgctg 156
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>gb|DQ396398.1| HIV-1 isolate 03ZAPS045MB2 from South Africa, complete genome
          Length = 9031

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 81   tgaggagctcgtcgtcgctg 100
            ||||||||||||||||||||
Sbjct: 5443 tgaggagctcgtcgtcgctg 5424
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>gb|AY450998.1| HIV-1 isolate SS90/26 from USA tat protein (tat) gene, partial
           sequence
          Length = 321

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  tgaggagctcgtcgtcgctg 100
           ||||||||||||||||||||
Sbjct: 257 tgaggagctcgtcgtcgctg 238
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>gb|AY450969.1| HIV-1 isolate AE96/999260 from USA tat protein (tat) gene, partial
           sequence
          Length = 321

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  tgaggagctcgtcgtcgctg 100
           ||||||||||||||||||||
Sbjct: 257 tgaggagctcgtcgtcgctg 238
to top
>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16
          Length = 349876

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 63     tgctggagttctccgggctg 82
              ||||||||||||||||||||
Sbjct: 180213 tgctggagttctccgggctg 180232
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>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12
          Length = 348934

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    tgctggagttctccgggctg 82
             ||||||||||||||||||||
Sbjct: 13755 tgctggagttctccgggctg 13774
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>gb|AC023296.6| Homo sapiens chromosome 8, clone RP11-564K14, complete sequence
          Length = 189532

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     ggggggcatgctggagttct 74
              ||||||||||||||||||||
Sbjct: 154382 ggggggcatgctggagttct 154363
to top
>gb|L81176.2|PSEFLAOP Pseudomonas aeruginosa flagellin (fliC) gene, partial cds; FlaG
            (flaG), flagellar cap (fliD), FliS (fliS), and FleQ
            (fleQ) genes, complete cds; and unknown genes
          Length = 5735

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 187  gaaggcgccgacggaggcgaagctcaag 214
            ||||||||||| ||||||| ||||||||
Sbjct: 1406 gaaggcgccgaaggaggcgcagctcaag 1433
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>gb|AF408629.1| HIV-1 isolate A32879 from Argentina, complete genome
          Length = 9192

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 81   tgaggagctcgtcgtcgctg 100
            ||||||||||||||||||||
Sbjct: 5575 tgaggagctcgtcgtcgctg 5556
to top
>gb|AY713412.1| HIV-1 isolate 90US_873 from USA gag protein (gag) and pol protein
            (pol) genes, partial cds; and vif protein (vif), vpr
            protein (vpr), tat protein (tat), rev protein (rev), vpu
            protein (vpu), envelope glycoprotein (env), and nef
            protein (nef) genes, complete cds
          Length = 8791

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 81   tgaggagctcgtcgtcgctg 100
            ||||||||||||||||||||
Sbjct: 5210 tgaggagctcgtcgtcgctg 5191
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 86       agctcgtcgtcgctgccgct 105
                ||||||||||||||||||||
Sbjct: 27356053 agctcgtcgtcgctgccgct 27356034
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>gb|AF326484.1|AF326484 Zea mays NOD26-like membrane integral protein ZmNIP2-1 mRNA,
           complete cds
          Length = 1293

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  ggggggcatgctggagttct 74
           ||||||||||||||||||||
Sbjct: 282 ggggggcatgctggagttct 263
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>gb|AY857182.2| HIV-1 isolate 9762120 from Australia, partial genome
          Length = 8415

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 81   tgaggagctcgtcgtcgctg 100
            ||||||||||||||||||||
Sbjct: 4843 tgaggagctcgtcgtcgctg 4824
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>dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1323_A06
          Length = 95665

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    agctcgtcgtcgctgccgct 105
             ||||||||||||||||||||
Sbjct: 57580 agctcgtcgtcgctgccgct 57561
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>gb|AF139825.1|AF139825 Pseudomonas aeruginosa strain PA103 flagellar cap protein FliD
           (fliD) and FliS (fliS) genes, complete cds
          Length = 2047

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 187 gaaggcgccgacggaggcgaagctcaag 214
           ||||||||||| ||||||| ||||||||
Sbjct: 221 gaaggcgccgaaggaggcgcagctcaag 248
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>gb|AF139824.1|AF139824 Pseudomonas aeruginosa strain PAK flagellar cap protein FliD (fliD)
           and FliS (fliS) genes, complete cds
          Length = 2095

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 187 gaaggcgccgacggaggcgaagctcaag 214
           ||||||||||| ||||||| ||||||||
Sbjct: 242 gaaggcgccgaaggaggcgcagctcaag 269
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>gb|AF139823.1|AF139823 Pseudomonas aeruginosa strain cs2 flagellar cap protein FliD (fliD)
           and FliS (fliS) genes, complete cds
          Length = 2049

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 187 gaaggcgccgacggaggcgaagctcaag 214
           ||||||||||| ||||||| ||||||||
Sbjct: 222 gaaggcgccgaaggaggcgcagctcaag 249
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>gb|AF139822.1|AF139822 Pseudomonas aeruginosa strain cs32 flagellar cap protein FliD
           (fliD) and FliS (fliS) genes, complete cds
          Length = 2053

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 187 gaaggcgccgacggaggcgaagctcaag 214
           ||||||||||| ||||||| ||||||||
Sbjct: 222 gaaggcgccgaaggaggcgcagctcaag 249
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>gb|AY835778.1| HIV-1 isolate 5018-86 clone pbf6 from USA, complete genome
          Length = 9703

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 81   tgaggagctcgtcgtcgctg 100
            ||||||||||||||||||||
Sbjct: 6008 tgaggagctcgtcgtcgctg 5989
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>gb|AY835777.1| HIV-1 isolate 5018-83 clone pbf4 from USA, complete genome
          Length = 9703

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 81   tgaggagctcgtcgtcgctg 100
            ||||||||||||||||||||
Sbjct: 6008 tgaggagctcgtcgtcgctg 5989
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>gb|U80572.1|HIVU80572 HIV-1 patient TPVIII, sample 1995, tat protein (tat) gene, partial
           cds
          Length = 216

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  tgaggagctcgtcgtcgctg 100
           ||||||||||||||||||||
Sbjct: 179 tgaggagctcgtcgtcgctg 160
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>gb|U80555.1|HIVU80555 HIV-1 patient LTS16, sample 1995, tat protein (tat) gene, partial
           cds
          Length = 216

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  tgaggagctcgtcgtcgctg 100
           ||||||||||||||||||||
Sbjct: 179 tgaggagctcgtcgtcgctg 160
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>gb|AF000525.1|AF000525 HIV-1 strain CH94-A2tat from USA, Tat protein (tat) gene, partial
           cds
          Length = 219

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  tgaggagctcgtcgtcgctg 100
           ||||||||||||||||||||
Sbjct: 179 tgaggagctcgtcgtcgctg 160
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>gb|AF000522.1|AF000522 HIV-1 strain AD93-A3tat from USA, Tat protein (tat) gene, partial
           cds
          Length = 219

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  tgaggagctcgtcgtcgctg 100
           ||||||||||||||||||||
Sbjct: 179 tgaggagctcgtcgtcgctg 160
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>gb|U44018.1|HIVU44018 Human immunodeficiency virus type 1 tat mRNA, partial cds
          Length = 243

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  tgaggagctcgtcgtcgctg 100
           ||||||||||||||||||||
Sbjct: 206 tgaggagctcgtcgtcgctg 187
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>gb|U44017.1|HIVU44017 Human immunodeficiency virus type 1 tat mRNA, partial cds
          Length = 243

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  tgaggagctcgtcgtcgctg 100
           ||||||||||||||||||||
Sbjct: 206 tgaggagctcgtcgtcgctg 187
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>gb|U44012.1|HIVU44012 Human immunodeficiency virus type 1 tat mRNA, partial cds
          Length = 243

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  tgaggagctcgtcgtcgctg 100
           ||||||||||||||||||||
Sbjct: 206 tgaggagctcgtcgtcgctg 187
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>gb|U44011.1|HIVU44011 Human immunodeficiency virus type 1 tat mRNA, partial cds
          Length = 243

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  tgaggagctcgtcgtcgctg 100
           ||||||||||||||||||||
Sbjct: 206 tgaggagctcgtcgtcgctg 187
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>gb|U44009.1|HIVU44009 Human immunodeficiency virus type 1 tat mRNA, partial cds
          Length = 243

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  tgaggagctcgtcgtcgctg 100
           ||||||||||||||||||||
Sbjct: 206 tgaggagctcgtcgtcgctg 187
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>gb|U44008.1|HIVU44008 Human immunodeficiency virus type 1 tat mRNA, partial cds
          Length = 243

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  tgaggagctcgtcgtcgctg 100
           ||||||||||||||||||||
Sbjct: 206 tgaggagctcgtcgtcgctg 187
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>gb|U44002.1|HIVU44002 Human immunodeficiency virus type 1 tat mRNA, partial cds
          Length = 243

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  tgaggagctcgtcgtcgctg 100
           ||||||||||||||||||||
Sbjct: 206 tgaggagctcgtcgtcgctg 187
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>gb|U44001.1|HIVU44001 Human immunodeficiency virus type 1 tat mRNA, partial cds
          Length = 243

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  tgaggagctcgtcgtcgctg 100
           ||||||||||||||||||||
Sbjct: 206 tgaggagctcgtcgtcgctg 187
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>gb|U44000.1|HIVU44000 Human immunodeficiency virus type 1 tat mRNA, partial cds
          Length = 243

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  tgaggagctcgtcgtcgctg 100
           ||||||||||||||||||||
Sbjct: 206 tgaggagctcgtcgtcgctg 187
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>gb|U43998.1|HIVU43998 Human immunodeficiency virus type 1 tat mRNA, partial cds
          Length = 243

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  tgaggagctcgtcgtcgctg 100
           ||||||||||||||||||||
Sbjct: 206 tgaggagctcgtcgtcgctg 187
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>gb|U80472.1|HIVU80472 HIV-1 patient VE12 from Venezuela, sample 1995, tat protein (tat)
           gene, partial cds
          Length = 216

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  tgaggagctcgtcgtcgctg 100
           ||||||||||||||||||||
Sbjct: 179 tgaggagctcgtcgtcgctg 160
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>dbj|D21159.1|RICASP1 Rice Osg4B gene for anther specific protein, complete cds (exon1,
           exon2)
          Length = 2429

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 86  agctcgtcgtcgctgccgct 105
           ||||||||||||||||||||
Sbjct: 704 agctcgtcgtcgctgccgct 685


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,252,735
Number of Sequences: 3902068
Number of extensions: 1252735
Number of successful extensions: 31508
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31249
Number of HSP's gapped (non-prelim): 259
length of query: 228
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 206
effective length of database: 17,147,199,772
effective search space: 3532323153032
effective search space used: 3532323153032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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