>PORA_HORVU (P13653) Protochlorophyllide reductase A, chloroplast precursor (EC|
           1.3.1.33) (PCR A) (NADPH-protochlorophyllide
           oxidoreductase A) (POR A)
          Length = 388

 Score = 74.3 bits (181), Expect = 7e-14
 Identities = 39/39 (100%), Positives = 39/39 (100%)
 Frame = +2

Query: 131 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQ 247
           TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQ
Sbjct: 9   TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQ 47

>PORA_WHEAT (Q41578) Protochlorophyllide reductase A, chloroplast precursor (EC|
           1.3.1.33) (PCR A) (NADPH-protochlorophyllide
           oxidoreductase A) (POR A)
          Length = 388

 Score = 72.8 bits (177), Expect = 2e-13
 Identities = 38/39 (97%), Positives = 38/39 (97%)
 Frame = +2

Query: 131 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQ 247
           TLSVPKKGSSMGA AVKDTAAFLGVSSKAKKASLAVRTQ
Sbjct: 9   TLSVPKKGSSMGAAAVKDTAAFLGVSSKAKKASLAVRTQ 47

>RPOA_ANAMM (Q5PA81) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 366

 Score = 32.0 bits (71), Expect = 0.40
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = -1

Query: 189 AVSFTATAPMLLPFLGTERVEGRSWRAMDDGELGLSLASTALQEFNELEL 40
           AVS       L  F+G+E VEG S + +D  E  L      L++ +ELEL
Sbjct: 243 AVSARVLQDQLQSFIGSEEVEGESRKKVDKEEGALPYDHNLLRKVDELEL 292

>YHIM_ECOLI (P37630) Inner membrane protein yhiM|
          Length = 364

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -1

Query: 297 DAVEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTATAPM 160
           D    G V+ G G +A CV T + +    LL P+NAA S +   P+
Sbjct: 117 DEFVAGHVIFGVGMIAACVSTVAASSGHFLLIPKNAAGSKSDGTPV 162

>CASK_CAMDR (P79139) Kappa-casein precursor|
          Length = 182

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 291 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 169
           VEP ++ T E AV T V+  + + F    TP    V  T+T
Sbjct: 140 VEPPVIPTAEPAVNTVVIAEASSEFITTSTPETTTVQITST 180

>CASK_LAMGU (Q28451) Kappa-casein (Fragment)|
          Length = 125

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 291 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 169
           VEP ++ T E  V T V+  + + F    TP    V  T+T
Sbjct: 83  VEPPVIPTAEPVVNTVVIAEASSEFITTSTPETTTVQITST 123

>ALGE_PSEAE (P18895) Alginate production protein algE precursor|
          Length = 490

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -1

Query: 117 WRAMDDGELGLSLASTALQEFNE---LELECTVLLYFTSGLV 1
           WR  DD ++G S  + ALQ   +    EL+  V  YF  GL+
Sbjct: 402 WRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKQGLL 443

>FLR1_YEAST (P38124) Fluconazole resistance protein 1|
          Length = 548

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 26/86 (30%), Positives = 39/86 (45%)
 Frame = -1

Query: 276 VVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTATAPMLLPFLGTERVEGRSWRAMDDG 97
           + TG G VA  +   S     L+L   +A       AP+L P LG   V+ ++WR +   
Sbjct: 212 LATGGGTVADII---SPEMVPLVLGMWSAGA---VAAPVLAPLLGAAMVDAKNWRFIFWL 265

Query: 96  ELGLSLASTALQEFNELELECTVLLY 19
            + LS A+  L  F   E +   +LY
Sbjct: 266 LMWLSAATFILLAFFFPETQHHNILY 291

>ANP3_PSEAM (P02733) Ice-structuring protein 3 (ISP 3) (Antifreeze peptide 3)|
          Length = 37

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 270 TGEGAVATCVLTASDAFFALLLTPRNAAVSFTATA 166
           T   A A   LTA++A  A  LT  +AA +  ATA
Sbjct: 2   TASDAAAAAALTAABAAAAAKLTABBAAAAAAATA 36

>CASK_TAYTA (Q28794) Kappa-casein (Fragment)|
          Length = 146

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 291 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 169
           VEP L+ T E  V T V+  + + F +  TP   AV  ++T
Sbjct: 104 VEPTLIPTTEPVVNTVVIPEAASEFLITNTPETTAVQVSST 144

>MUCDL_MOUSE (Q8VHF2) Mucin and cadherin-like protein precursor|
           (Mu-protocadherin)
          Length = 831

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -1

Query: 204 TPRNAAVSFTATAPMLLPFLGT-ERVEGRSWRAMDDGELGLSLASTALQEFNELELECTV 28
           TP+      TAT P+ LP  G  E+ +G+ +  +D   LG  L +  L     L L C V
Sbjct: 605 TPKPGTSQSTATGPISLPSTGAGEQGDGQRFSTVDMAVLGGVLGALLL-----LALICLV 659

Query: 27  LL 22
           +L
Sbjct: 660 IL 661

>ANPB_PSEAM (Q99013) Ice-structuring protein B precursor (ISP B) (Antifreeze|
           protein B) (HPLC8)
          Length = 82

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 270 TGEGAVATCVLTASDAFFALLLTPRNAAVSFTATA 166
           T   A A   LTA++A  A  LT  NAA +  ATA
Sbjct: 46  TASDAAAAAALTAANAAAAAKLTADNAAAAAAATA 80

>RBL_ARCFU (O28635) Ribulose bisphosphate carboxylase (EC 4.1.1.39) (RuBisCO)|
          Length = 441

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 26/74 (35%), Positives = 32/74 (43%)
 Frame = -1

Query: 309 PLGDDAVEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTATAPMLLPFLGTERV 130
           P  DD V    +   EG       T  DA  A+      AA S T T   L P+   ERV
Sbjct: 17  PQKDDIVAVFRITPAEG------FTIEDAAGAV------AAESSTGTWTSLHPWYDEERV 64

Query: 129 EGRSWRAMDDGELG 88
           +G S +A D  +LG
Sbjct: 65  KGLSAKAYDFVDLG 78

>CASK_UNCUN (Q29150) Kappa-casein (Fragment)|
          Length = 146

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 288 EPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 169
           EP L  T E  V T V T + + F +  TP    V  T+T
Sbjct: 105 EPTLTPTTEPIVNTVVTTEASSEFTITSTPETTTVPVTST 144

>ICAM5_MOUSE (Q60625) Intercellular adhesion molecule 5 precursor (ICAM-5)|
           (Telencephalin)
          Length = 917

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 312 LPLGDDAVEPGLVVTGEGAVATCVLTAS 229
           L LGD  + P + + G+  VAT   TAS
Sbjct: 264 LSLGDQRLNPNVTLDGDSLVATATATAS 291

>HAS1_CANAL (Q5AK59) ATP-dependent RNA helicase HAS1 (EC 3.6.1.-)|
          Length = 565

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = -1

Query: 282 GLVVTGEGAVATCVLTASDAFFALLLTPRN--AAVSFTATAPMLLPFLGTER 133
           G   TG G     ++ A +  ++L + PRN  A +  T T  + L   G  R
Sbjct: 150 GAAKTGSGKTLAFLIPAIELLYSLKIKPRNGTAVIIITPTRELALQIFGVAR 201

>ANPA_PSEAM (P04002) Ice-structuring protein A precursor (ISP A) (Antifreeze|
           protein A) (HPLC6)
          Length = 82

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 270 TGEGAVATCVLTASDAFFALLLTPRNAAVSFTATA 166
           T   A A   LTA++A  A  LT  NAA +  ATA
Sbjct: 46  TASDAAAAAALTAANAKAAAELTAANAAAAAAATA 80

>TRAM7_ECOLI (P33787) Protein traM|
          Length = 127

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 24/57 (42%), Positives = 29/57 (50%)
 Frame = -1

Query: 198 RNAAVSFTATAPMLLPFLGTERVEGRSWRAMDDGELGLSLASTALQEFNELELECTV 28
           R   VSF+ATA MLL  LG    E +    M+  E   + A     EFN+L LEC V
Sbjct: 29  REKDVSFSATASMLLE-LGLRVYEAQ----MERKESAFNQA-----EFNKLLLECVV 75

>TRAM6_ECOLI (P18808) Protein traM|
          Length = 127

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 24/57 (42%), Positives = 29/57 (50%)
 Frame = -1

Query: 198 RNAAVSFTATAPMLLPFLGTERVEGRSWRAMDDGELGLSLASTALQEFNELELECTV 28
           R   VSF+ATA MLL  LG    E +    M+  E   + A     EFN+L LEC V
Sbjct: 29  REKDVSFSATASMLLE-LGLRVYEAQ----MERKESAFNQA-----EFNKLLLECVV 75


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,271,769
Number of Sequences: 219361
Number of extensions: 304779
Number of successful extensions: 1262
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 80,573,946
effective HSP length: 79
effective length of database: 63,244,427
effective search space used: 1517866248
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)