ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet52b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DACT1_HUMAN (Q9NYF0) Dapper homolog 1 (hDPR1) (Heptacellular car... 32 0.54
2AFR_ARATH (Q8LAW2) Protein AFR (Protein ATTENUATED FAR-RED RESPO... 32 0.54
3SYT8_HUMAN (Q8NBV8) Synaptotagmin-8 (Synaptotagmin VIII) (SytVIII) 28 4.5
4DACT1_MOUSE (Q8R4A3) Dapper homolog 1 (MDpr1) (Frodo) (Thymus-ex... 28 4.5
5GCH11_PSEPK (Q88LV4) GTP cyclohydrolase I 1 (EC 3.5.4.16) (GTP-C... 28 7.8

>DACT1_HUMAN (Q9NYF0) Dapper homolog 1 (hDPR1) (Heptacellular carcinoma novel|
           gene 3 protein)
          Length = 836

 Score = 31.6 bits (70), Expect = 0.54
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -2

Query: 152 DPCGTRARQSTATSSGIPGMRSTWSASHPWT--RLFGFIIA 36
           D CG     +  T S +P   S WSASHP +  ++ G+I++
Sbjct: 304 DICGGSELDAVKTDSSLPSPSSLWSASHPSSSKKMDGYILS 344



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>AFR_ARATH (Q8LAW2) Protein AFR (Protein ATTENUATED FAR-RED RESPONSE)|
          Length = 372

 Score = 31.6 bits (70), Expect = 0.54
 Identities = 16/65 (24%), Positives = 24/65 (36%)
 Frame = +1

Query: 91  LIPGMPDDVAVDCLARVPHGSYRSMRRVCRGWRSXXXXXXXXXXXXXXXXXXDLVFLMQF 270
           LI G+P+D+A  CL R+P+  +   R V   W                      +F+  F
Sbjct: 28  LISGLPNDIAELCLLRLPYPYHALYRSVSSSWNKTITNPRFLFSKQSLSISSPYLFVFAF 87

Query: 271 GNPVA 285
               A
Sbjct: 88  NKSTA 92



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>SYT8_HUMAN (Q8NBV8) Synaptotagmin-8 (Synaptotagmin VIII) (SytVIII)|
          Length = 172

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
 Frame = -2

Query: 119 ATSSGIPGMRSTWSASHPWTR---LFG------FIIACDLCELCCC 9
           A ++ IPG+     A  PW R   + G       +++C LC  CCC
Sbjct: 28  AGTTAIPGLIPDLVAGTPWPRWALIAGALAAGVLLVSCLLCAACCC 73



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>DACT1_MOUSE (Q8R4A3) Dapper homolog 1 (MDpr1) (Frodo) (Thymus-expressed novel|
           gene 3 protein)
          Length = 778

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -2

Query: 152 DPCGTRARQSTATSSGIPGMRSTWSASHPWT--RLFGFIIA 36
           D C      +T T + +P   S WSASHP +  ++ G+I++
Sbjct: 260 DICIGSELNATKTDNSLPSPSSLWSASHPASSKKMDGYILS 300



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>GCH11_PSEPK (Q88LV4) GTP cyclohydrolase I 1 (EC 3.5.4.16) (GTP-CH-I 1)|
          Length = 190

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = +1

Query: 49  PKSRVQGWEADHVDLIPGMPDDVAVDCLARVPHGSYRSMRRVCRGW 186
           P  R    E ++ +++  + +DV+ + L   P  + ++M+ +CRG+
Sbjct: 5   PTGRSMSLEQNYTEILSQIGEDVSREGLLDTPKRAAKAMKYLCRGY 50


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,283,967
Number of Sequences: 219361
Number of extensions: 309270
Number of successful extensions: 1216
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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