ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet52b01 |
|---|---|
| Clone Library Name | barley_pub |
>SFRS1_XENTR (Q6DII2) Splicing factor, arginine/serine-rich 1| Length = 267 Score = 84.0 bits (206), Expect = 2e-16 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDG 268 R+YVG LP RT+D+ED+F +YG +R +D+K+ FAFVEF DPRDA++A Y DG Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76 Query: 269 RDFDGSRMIVEFAK 310 D+DG R+ VEF + Sbjct: 77 YDYDGYRLRVEFPR 90
>SFRS1_CHICK (Q5ZML3) Splicing factor, arginine/serine-rich 1| Length = 256 Score = 84.0 bits (206), Expect = 2e-16 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDG 268 R+YVG LP RT+D+ED+F +YG +R +D+K+ FAFVEF DPRDA++A Y DG Sbjct: 16 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 75 Query: 269 RDFDGSRMIVEFAK 310 D+DG R+ VEF + Sbjct: 76 YDYDGYRLRVEFPR 89
>SFRS1_PONPY (Q5R7H2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 84.0 bits (206), Expect = 2e-16 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDG 268 R+YVG LP RT+D+ED+F +YG +R +D+K+ FAFVEF DPRDA++A Y DG Sbjct: 16 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 75 Query: 269 RDFDGSRMIVEFAK 310 D+DG R+ VEF + Sbjct: 76 YDYDGYRLRVEFPR 89
>SFRS1_MOUSE (Q6PDM2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 84.0 bits (206), Expect = 2e-16 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDG 268 R+YVG LP RT+D+ED+F +YG +R +D+K+ FAFVEF DPRDA++A Y DG Sbjct: 16 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 75 Query: 269 RDFDGSRMIVEFAK 310 D+DG R+ VEF + Sbjct: 76 YDYDGYRLRVEFPR 89
>SFRS1_HUMAN (Q07955) Splicing factor, arginine/serine-rich 1 (pre-mRNA-splicing| factor SF2, P33 subunit) (Alternative splicing factor ASF-1) Length = 247 Score = 84.0 bits (206), Expect = 2e-16 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDG 268 R+YVG LP RT+D+ED+F +YG +R +D+K+ FAFVEF DPRDA++A Y DG Sbjct: 16 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 75 Query: 269 RDFDGSRMIVEFAK 310 D+DG R+ VEF + Sbjct: 76 YDYDGYRLRVEFPR 89
>SFRS1_BRARE (Q6NYA0) Splicing factor, arginine/serine-rich 1| Length = 245 Score = 83.6 bits (205), Expect = 2e-16 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDG 268 R+YVG LP RT+D+ED+F +YG +R +D+K+ FAFVEF DPRDA++A Y DG Sbjct: 16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 75 Query: 269 RDFDGSRMIVEFAK 310 D+DG R+ VEF + Sbjct: 76 YDYDGYRLRVEFPR 89
>SF1L1_BRARE (Q7SXP4) Splicing factor, arginine/serine-rich 1-like protein 1| Length = 245 Score = 82.8 bits (203), Expect = 4e-16 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDG 268 R+YVG LP RT+D+ED+F +YG +R +D+K+ FAFVEF DPRDA++A Y DG Sbjct: 16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDG 75 Query: 269 RDFDGSRMIVEFAK 310 D+DG R+ VEF + Sbjct: 76 YDYDGYRLRVEFPR 89
>SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9| Length = 222 Score = 79.7 bits (195), Expect = 3e-15 Identities = 38/77 (49%), Positives = 53/77 (68%), Gaps = 5/77 (6%) Frame = +2 Query: 95 GNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYN 259 G+ R+YVG LPS R +DLEDLF +YGR+R +++K+ FAFV F DPRDA++A Y Sbjct: 13 GDGRIYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYG 72 Query: 260 LDGRDFDGSRMIVEFAK 310 +G D+ R+ VEF + Sbjct: 73 RNGYDYGQCRLRVEFPR 89
>SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9| Length = 221 Score = 78.6 bits (192), Expect = 8e-15 Identities = 37/77 (48%), Positives = 53/77 (68%), Gaps = 5/77 (6%) Frame = +2 Query: 95 GNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYN 259 G+ R+YVG LP+ R +DLEDLF +YGR+R +++K+ FAFV F DPRDA++A Y Sbjct: 12 GDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYG 71 Query: 260 LDGRDFDGSRMIVEFAK 310 +G D+ R+ VEF + Sbjct: 72 RNGYDYGQCRLRVEFPR 88
>SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pre-mRNA-splicing| factor SRp30C) Length = 221 Score = 78.6 bits (192), Expect = 8e-15 Identities = 37/77 (48%), Positives = 53/77 (68%), Gaps = 5/77 (6%) Frame = +2 Query: 95 GNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYN 259 G+ R+YVG LP+ R +DLEDLF +YGR+R +++K+ FAFV F DPRDA++A Y Sbjct: 12 GDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYG 71 Query: 260 LDGRDFDGSRMIVEFAK 310 +G D+ R+ VEF + Sbjct: 72 RNGYDYGQCRLRVEFPR 88
>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 272 Score = 76.3 bits (186), Expect = 4e-14 Identities = 33/69 (47%), Positives = 47/69 (68%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 283 R+++GRL R +D+E F YGR+R +D+K F FVEF DPRDAD+A Y LDG++ Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64 Query: 284 SRMIVEFAK 310 R+ +E A+ Sbjct: 65 ERVTIEHAR 73
>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4| Length = 489 Score = 76.3 bits (186), Expect = 4e-14 Identities = 35/69 (50%), Positives = 49/69 (71%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 283 R+Y+GRL + R RD+E F YG++ VD+K+ + FVEF D RDAD+A Y L+G+D G Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCG 62 Query: 284 SRMIVEFAK 310 R+IVE A+ Sbjct: 63 ERVIVEHAR 71
>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Insulin-induced growth response protein CL-4) (Delayed-early protein HRS) Length = 269 Score = 76.3 bits (186), Expect = 4e-14 Identities = 33/69 (47%), Positives = 47/69 (68%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 283 R+++GRL R +D+E F YGR+R +D+K F FVEF DPRDAD+A Y LDG++ Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64 Query: 284 SRMIVEFAK 310 R+ +E A+ Sbjct: 65 ERVTIEHAR 73
>SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 270 Score = 76.3 bits (186), Expect = 4e-14 Identities = 33/69 (47%), Positives = 47/69 (68%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 283 R+++GRL R +D+E F YGR+R +D+K F FVEF DPRDAD+A Y LDG++ Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64 Query: 284 SRMIVEFAK 310 R+ +E A+ Sbjct: 65 ERVTIEHAR 73
>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing| factor SRP75) (SRP001LB) Length = 494 Score = 76.3 bits (186), Expect = 4e-14 Identities = 35/69 (50%), Positives = 49/69 (71%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 283 R+Y+GRL + R RD+E F YG++ VD+K+ + FVEF D RDAD+A Y L+G+D G Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCG 62 Query: 284 SRMIVEFAK 310 R+IVE A+ Sbjct: 63 ERVIVEHAR 71
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 75.1 bits (183), Expect = 8e-14 Identities = 39/87 (44%), Positives = 56/87 (64%), Gaps = 4/87 (4%) Frame = +2 Query: 62 MPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKH----EFAFVEFSD 229 MPR D+ ++YVG LP R +++ED+F +YGR+++VD+K FAFVEF D Sbjct: 1 MPRGGSEDQ-----KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFED 55 Query: 230 PRDADEARYNLDGRDFDGSRMIVEFAK 310 RDA++A DG +FDG R+ VEF + Sbjct: 56 HRDAEDAVRARDGYEFDGRRIRVEFTR 82
>SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Splicing factor| 9G8) Length = 238 Score = 74.7 bits (182), Expect = 1e-13 Identities = 49/133 (36%), Positives = 63/133 (47%), Gaps = 3/133 (2%) Frame = +2 Query: 62 MPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---FAFVEFSDP 232 M RY RYGG T++YVG L + +LE F YG +R V + FAFVEF DP Sbjct: 1 MSRYG---RYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDP 57 Query: 233 RDADEARYNLDGRDFDGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPXPGSGRC 412 RDA++A LDG+ GSR+ VE + P + RC Sbjct: 58 RDAEDAVRGLDGKVICGSRVRVELS-----------TGMPRRSRFDRPPARRPFDPNDRC 106 Query: 413 FNCGIDGHWARDC 451 + CG GH+A DC Sbjct: 107 YECGEKGHYAYDC 119
>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) Length = 344 Score = 74.3 bits (181), Expect = 1e-13 Identities = 33/69 (47%), Positives = 48/69 (69%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 283 R+Y+GRL R +D++ F YGR+ VD+K+ + FVEF D RDAD+A Y L+G++ G Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62 Query: 284 SRMIVEFAK 310 R+IVE A+ Sbjct: 63 ERVIVEHAR 71
>RSP2_CAEEL (Q23120) Probable splicing factor, arginine/serine-rich 2| (RNA-binding protein srp-4) (CeSRp40) Length = 281 Score = 74.3 bits (181), Expect = 1e-13 Identities = 33/69 (47%), Positives = 50/69 (72%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 283 R+Y+GRLP+R RD+E F YG++ V MK+ F FV+F D RDAD+A ++L+G++ G Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDADDAVHDLNGKELCG 62 Query: 284 SRMIVEFAK 310 R+I+EF + Sbjct: 63 ERVILEFPR 71
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 73.2 bits (178), Expect = 3e-13 Identities = 31/69 (44%), Positives = 51/69 (73%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 283 R+Y+GRL SR +D+E F YG++R V +K+ F FVEF D RDA++A ++L+G++ G Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63 Query: 284 SRMIVEFAK 310 R+I++++K Sbjct: 64 ERVILDYSK 72
>RSP5_CAEEL (Q10021) Probable splicing factor, arginine/serine-rich 5| (RNA-binding protein srp-3) (CeSC35-2) Length = 208 Score = 72.4 bits (176), Expect = 5e-13 Identities = 32/71 (45%), Positives = 51/71 (71%), Gaps = 2/71 (2%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 283 RLY+G++P R RD+E YG++ ++ MK+ FAFV+F D RDA++A ++LDG+ +G Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEG 62 Query: 284 S--RMIVEFAK 310 S R++VE A+ Sbjct: 63 SSMRLVVEMAR 73
>SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein enhancer of| deformed) (52-kDa bracketing protein) (B52 protein) Length = 375 Score = 71.6 bits (174), Expect = 9e-13 Identities = 35/70 (50%), Positives = 48/70 (68%) Frame = +2 Query: 101 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFD 280 +R+YVG LP R RDLE F YGR R + +K+ + FVEF D RDAD+A Y L+G++ Sbjct: 3 SRVYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELL 62 Query: 281 GSRMIVEFAK 310 G R++VE A+ Sbjct: 63 GERVVVEPAR 72
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 70.9 bits (172), Expect = 2e-12 Identities = 36/72 (50%), Positives = 47/72 (65%), Gaps = 5/72 (6%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDGR 271 +YVG LP R R++EDLF +YG V +D+K +AFVEF D RDA++A + DG Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68 Query: 272 DFDGSRMIVEFA 307 DFDG R+ VE A Sbjct: 69 DFDGHRLRVELA 80
>SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7| Length = 267 Score = 65.9 bits (159), Expect = 5e-11 Identities = 44/126 (34%), Positives = 60/126 (47%), Gaps = 5/126 (3%) Frame = +2 Query: 89 YGGN--TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---FAFVEFSDPRDADEAR 253 +GG+ T++YVG L + +LE F YG +R V + FAFVEF DPRDA++A Sbjct: 34 WGGDSETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAV 93 Query: 254 YNLDGRDFDGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPXPGSGRCFNCGIDG 433 LDG+ GSR+ VE + P + RC+ CG G Sbjct: 94 RGLDGKVICGSRVRVELS-----------TGMPRRSRFDRPPARRPFDPNDRCYECGEKG 142 Query: 434 HWARDC 451 H+A DC Sbjct: 143 HYAYDC 148
>RSP31_ARATH (P92964) Arginine/serine-rich splicing factor RSP31| Length = 264 Score = 60.8 bits (146), Expect = 2e-09 Identities = 34/70 (48%), Positives = 43/70 (61%), Gaps = 2/70 (2%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF--D 280 ++VG TR DLE LF +YGRV VDMK +AFV F D RDA++A LD F + Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFGYE 63 Query: 281 GSRMIVEFAK 310 R+ VE+AK Sbjct: 64 KRRLSVEWAK 73 Score = 38.5 bits (88), Expect = 0.009 Identities = 17/42 (40%), Positives = 26/42 (61%) Frame = +2 Query: 125 PSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEA 250 P RT+ D+E F YG+V +V ++ F+FV+F DA +A Sbjct: 102 PIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKA 143
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 60.5 bits (145), Expect = 2e-09 Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Frame = +2 Query: 101 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFD 280 T+++VG L +TR ++ +LF +YG V D+ + FV D +A L+GR D Sbjct: 86 TKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQDAIKELNGRVVD 145 Query: 281 GSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPXPGSG---RCFNCGIDGHWARDC 451 G + V+ + P PG G +C+ CG GHW+++C Sbjct: 146 GQPLKVQVS----------------------TSRVRPKPGMGDPEQCYRCGRSGHWSKEC 183 Score = 42.4 bits (98), Expect = 6e-04 Identities = 22/72 (30%), Positives = 36/72 (50%) Frame = +2 Query: 95 GNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRD 274 G +L++G L +T+ +L LF +YG V D+ + FV + +A NL+G Sbjct: 5 GTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYT 64 Query: 275 FDGSRMIVEFAK 310 + + VE AK Sbjct: 65 LNEFAIKVEAAK 76
>SRP2_SCHPO (P78814) Pre-mRNA-splicing factor srp2| Length = 365 Score = 59.7 bits (143), Expect = 4e-09 Identities = 28/70 (40%), Positives = 43/70 (61%) Frame = +2 Query: 101 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFD 280 TRL+VGR+P + D+ D F YG++ + + F FVE D RDA + + G++F Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFM 63 Query: 281 GSRMIVEFAK 310 GSR++VE A+ Sbjct: 64 GSRIVVEPAR 73
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 57.8 bits (138), Expect = 1e-08 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Frame = +2 Query: 80 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYN 259 +++ +T+L+VG + ++L F YG V D+ ++AFV DA EA Sbjct: 71 KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 130 Query: 260 LDGRDFDGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPXPGSG---RCFNCGID 430 LD +F G RM V+ + PG G C+ CG + Sbjct: 131 LDNTEFQGKRMHVQLS----------------------TSRLRTAPGMGDQSGCYRCGKE 168 Query: 431 GHWARDC 451 GHW+++C Sbjct: 169 GHWSKEC 175 Score = 42.7 bits (99), Expect = 5e-04 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 283 +L++G LP +++ LF +YG+V D+ + FV D A++A NL G Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62 Query: 284 SRMIVEFAK 310 + VE +K Sbjct: 63 VNINVEASK 71
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 57.8 bits (138), Expect = 1e-08 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Frame = +2 Query: 80 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYN 259 +++ +T+L+VG + ++L F YG V D+ ++AFV DA EA Sbjct: 71 KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 130 Query: 260 LDGRDFDGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPXPGSG---RCFNCGID 430 LD +F G RM V+ + PG G C+ CG + Sbjct: 131 LDNTEFQGKRMHVQLS----------------------TSRLRTAPGMGDQSGCYRCGKE 168 Query: 431 GHWARDC 451 GHW+++C Sbjct: 169 GHWSKEC 175 Score = 42.7 bits (99), Expect = 5e-04 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 283 +L++G LP +++ LF +YG+V D+ + FV D A++A NL G Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62 Query: 284 SRMIVEFAK 310 + VE +K Sbjct: 63 VNINVEASK 71
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 57.8 bits (138), Expect = 1e-08 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Frame = +2 Query: 80 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYN 259 +++ +T+L+VG + ++L F YG V D+ ++AFV DA EA Sbjct: 71 KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 130 Query: 260 LDGRDFDGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPXPGSG---RCFNCGID 430 LD +F G RM V+ + PG G C+ CG + Sbjct: 131 LDNTEFQGKRMHVQLS----------------------TSRLRTAPGMGDQSGCYRCGKE 168 Query: 431 GHWARDC 451 GHW+++C Sbjct: 169 GHWSKEC 175 Score = 42.7 bits (99), Expect = 5e-04 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 283 +L++G LP +++ LF +YG+V D+ + FV D A++A NL G Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62 Query: 284 SRMIVEFAK 310 + VE +K Sbjct: 63 VNINVEASK 71
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 57.8 bits (138), Expect = 1e-08 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Frame = +2 Query: 80 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYN 259 +++ +T+L+VG + ++L F YG V D+ ++AFV DA EA Sbjct: 71 KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 130 Query: 260 LDGRDFDGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPXPGSG---RCFNCGID 430 LD +F G RM V+ + PG G C+ CG + Sbjct: 131 LDNTEFQGKRMHVQLS----------------------TSRLRTAPGMGDQSGCYRCGKE 168 Query: 431 GHWARDC 451 GHW+++C Sbjct: 169 GHWSKEC 175 Score = 42.7 bits (99), Expect = 5e-04 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 283 +L++G LP +++ LF +YG+V D+ + FV D A++A NL G Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62 Query: 284 SRMIVEFAK 310 + VE +K Sbjct: 63 VNINVEASK 71
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 57.8 bits (138), Expect = 1e-08 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Frame = +2 Query: 80 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYN 259 +++ +T+L+VG + ++L F YG V D+ ++AFV DA EA Sbjct: 71 KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 130 Query: 260 LDGRDFDGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPXPGSG---RCFNCGID 430 LD +F G RM V+ + PG G C+ CG + Sbjct: 131 LDNTEFQGKRMHVQLS----------------------TSRLRTAPGMGDQSGCYRCGKE 168 Query: 431 GHWARDC 451 GHW+++C Sbjct: 169 GHWSKEC 175 Score = 42.7 bits (99), Expect = 5e-04 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 283 +L++G LP +++ LF +YG+V D+ + FV D A++A NL G Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62 Query: 284 SRMIVEFAK 310 + VE +K Sbjct: 63 VNINVEASK 71
>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6| (RNA-binding protein srp-1) (CeSRp20) Length = 179 Score = 57.8 bits (138), Expect = 1e-08 Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---FAFVEFSDPRDADEARYNLDG 268 + ++YVG LPS +++LE++F R+GR+R V + FAFVE+ D RDA++A LDG Sbjct: 2 DAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDG 61 Query: 269 RDFDGSRMIVEFA 307 G R VE + Sbjct: 62 SRICGVRARVELS 74
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 57.8 bits (138), Expect = 1e-08 Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF 277 +T+L+VG + ++L F YG V D+ ++AFV DA EA LD +F Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136 Query: 278 DGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPXPGSG---RCFNCGIDGHWARD 448 G RM V+ + PG G C+ CG +GHW+++ Sbjct: 137 QGKRMHVQLS----------------------TSRLRTAPGMGDQSGCYRCGKEGHWSKE 174 Query: 449 C 451 C Sbjct: 175 C 175 Score = 42.7 bits (99), Expect = 5e-04 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 283 +L++G LP +++ LF +YG+V D+ + FV D A++A NL G Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62 Query: 284 SRMIVEFAK 310 + VE +K Sbjct: 63 VNINVEASK 71
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 57.8 bits (138), Expect = 1e-08 Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF 277 +T+L+VG + ++L F YG V D+ ++AFV DA EA LD +F Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136 Query: 278 DGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPXPGSG---RCFNCGIDGHWARD 448 G RM V+ + PG G C+ CG +GHW+++ Sbjct: 137 QGKRMHVQLS----------------------TSRLRTAPGMGDQSGCYRCGKEGHWSKE 174 Query: 449 C 451 C Sbjct: 175 C 175 Score = 42.7 bits (99), Expect = 5e-04 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 283 +L++G LP +++ LF +YG+V D+ + FV D A++A NL G Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62 Query: 284 SRMIVEFAK 310 + VE +K Sbjct: 63 VNINVEASK 71
>RBP1_DROME (Q02427) RNA-binding protein 1| Length = 144 Score = 56.2 bits (134), Expect = 4e-08 Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 3/85 (3%) Frame = +2 Query: 62 MPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---FAFVEFSDP 232 MPRY E D ++YVG L S ++E F +YG +R+V + FAFVEF D Sbjct: 1 MPRYREWDLA---CKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDR 57 Query: 233 RDADEARYNLDGRDFDGSRMIVEFA 307 RDA++A LDG G+R+ VE + Sbjct: 58 RDAEDATRALDGTRCCGTRIRVEMS 82
>SFRS3_MOUSE (P84104) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) (X16 protein) Length = 164 Score = 56.2 bits (134), Expect = 4e-08 Identities = 34/79 (43%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Frame = +2 Query: 80 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---FAFVEFSDPRDADEA 250 RD + ++YVG L + +LE FG YG +R V + FAFVEF DPRDA +A Sbjct: 3 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADA 62 Query: 251 RYNLDGRDFDGSRMIVEFA 307 LDGR G R+ VE + Sbjct: 63 VRELDGRTLCGCRVRVELS 81
>SFRS3_HUMAN (P84103) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) Length = 164 Score = 56.2 bits (134), Expect = 4e-08 Identities = 34/79 (43%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Frame = +2 Query: 80 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---FAFVEFSDPRDADEA 250 RD + ++YVG L + +LE FG YG +R V + FAFVEF DPRDA +A Sbjct: 3 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADA 62 Query: 251 RYNLDGRDFDGSRMIVEFA 307 LDGR G R+ VE + Sbjct: 63 VRELDGRTLCGCRVRVELS 81
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 55.5 bits (132), Expect = 7e-08 Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF 277 +T+L+VG + S ++L F YG V D+ ++AFV DA EA LD F Sbjct: 77 STKLHVGNISSSCTNQELRAKFEEYGPVVECDIVKDYAFVHMERVEDAMEAISGLDNTAF 136 Query: 278 DGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPXPGSGR---CFNCGIDGHWARD 448 G M V+ + PG G C+ CG +GHW+++ Sbjct: 137 QGKLMSVKLS----------------------TSRLRTAPGMGERTGCYRCGQEGHWSKE 174 Query: 449 C 451 C Sbjct: 175 C 175 Score = 48.1 bits (113), Expect = 1e-05 Identities = 23/69 (33%), Positives = 35/69 (50%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 283 +++VG L T ++ LF +YG++ D+ F FV +ADEA NL +G Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNG 62 Query: 284 SRMIVEFAK 310 M VE +K Sbjct: 63 MAMNVEMSK 71
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 53.9 bits (128), Expect = 2e-07 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 8/85 (9%) Frame = +2 Query: 77 ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDP 232 E DR G +L++G L + T + LE +FG+YGR+ R + FAFV F P Sbjct: 3 EADRPG---KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESP 59 Query: 233 RDADEARYNLDGRDFDGSRMIVEFA 307 DA +A +++G+ DG + VE A Sbjct: 60 ADAKDAARDMNGKSLDGKAIKVEQA 84
>RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40| Length = 350 Score = 53.1 bits (126), Expect = 3e-07 Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF--D 280 ++ G R DLE LF +YG+V VDMK FAFV D RDA++A LD +F Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFGRK 63 Query: 281 GSRMIVEFAK 310 G R+ VE+ K Sbjct: 64 GRRLRVEWTK 73 Score = 38.5 bits (88), Expect = 0.009 Identities = 17/39 (43%), Positives = 25/39 (64%) Frame = +2 Query: 134 TRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEA 250 TRTRDLE F YG++ +V ++ FAF+++ DA A Sbjct: 109 TRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRA 147
>RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41| Length = 356 Score = 52.4 bits (124), Expect = 6e-07 Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF--D 280 ++ G R DLE LF +YG+V VDMK FAFV D RDA++A LD ++ Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRT 63 Query: 281 GSRMIVEFAK 310 G R+ VE+ K Sbjct: 64 GRRLRVEWTK 73 Score = 40.8 bits (94), Expect = 0.002 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 11/66 (16%) Frame = +2 Query: 86 RYGGNTRLYVGRLPSRT-----------RTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDP 232 R GG+ R G PS+T RTRDLE F YG++ +V ++ FAF+++ Sbjct: 81 RSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQ 140 Query: 233 RDADEA 250 DA A Sbjct: 141 EDATRA 146
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 52.4 bits (124), Expect = 6e-07 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 8/85 (9%) Frame = +2 Query: 77 ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDP 232 E DR G +L++G L + T + LE +FG+YGR+ R + FAFV F P Sbjct: 3 EADRPG---KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESP 59 Query: 233 RDADEARYNLDGRDFDGSRMIVEFA 307 DA + +++G+ DG + VE A Sbjct: 60 ADAKDVARDMNGKSLDGKAIKVEQA 84
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 51.6 bits (122), Expect = 1e-06 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 8/79 (10%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF--------AFVEFSDPRDADEAR 253 NT L+V + TR+ DL FGRYG + V + +F A+V+F D RDA++A Sbjct: 9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL 68 Query: 254 YNLDGRDFDGSRMIVEFAK 310 +NLD + G ++ ++FA+ Sbjct: 69 HNLDRKWICGRQIEIQFAQ 87
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 51.6 bits (122), Expect = 1e-06 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 8/79 (10%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF--------AFVEFSDPRDADEAR 253 NT L+V + TR+ DL FGRYG + V + +F A+V+F D RDA++A Sbjct: 9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL 68 Query: 254 YNLDGRDFDGSRMIVEFAK 310 +NLD + G ++ ++FA+ Sbjct: 69 HNLDRKWICGRQIEIQFAQ 87
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 51.6 bits (122), Expect = 1e-06 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 8/85 (9%) Frame = +2 Query: 77 ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDP 232 E DR G +L++G L + T + LE +FG+YGR+ R + FAFV P Sbjct: 3 EADRPG---KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESP 59 Query: 233 RDADEARYNLDGRDFDGSRMIVEFA 307 DA +A +++G+ DG + VE A Sbjct: 60 ADAKDAARDMNGKSLDGKAIKVEQA 84
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 51.2 bits (121), Expect = 1e-06 Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 14/97 (14%) Frame = +2 Query: 44 SLSQCRMPRYDERDRYGGN-----TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE- 205 S S+ + P+ DE++R + T++++GRL + ++F YG+++ +DM E Sbjct: 137 SRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVER 196 Query: 206 --------FAFVEFSDPRDADEARYNLDGRDFDGSRM 292 +A+VEF +P +A++A ++DG DG + Sbjct: 197 MHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 51.2 bits (121), Expect = 1e-06 Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 14/97 (14%) Frame = +2 Query: 44 SLSQCRMPRYDERDRYGGN-----TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE- 205 S S+ + P+ DE++R + T++++GRL + ++F YG+++ +DM E Sbjct: 137 SRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVER 196 Query: 206 --------FAFVEFSDPRDADEARYNLDGRDFDGSRM 292 +A+VEF +P +A++A ++DG DG + Sbjct: 197 MHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 51.2 bits (121), Expect = 1e-06 Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 14/97 (14%) Frame = +2 Query: 44 SLSQCRMPRYDERDRYGGN-----TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE- 205 S S+ + P+ DE++R + T++++GRL + ++F YG+++ +DM E Sbjct: 137 SRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVER 196 Query: 206 --------FAFVEFSDPRDADEARYNLDGRDFDGSRM 292 +A+VEF +P +A++A ++DG DG + Sbjct: 197 MHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 51.2 bits (121), Expect = 1e-06 Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 14/97 (14%) Frame = +2 Query: 44 SLSQCRMPRYDERDRYGGN-----TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE- 205 S S+ + P+ DE++R + T++++GRL + ++F YG+++ +DM E Sbjct: 137 SRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVER 196 Query: 206 --------FAFVEFSDPRDADEARYNLDGRDFDGSRM 292 +A+VEF +P +A++A ++DG DG + Sbjct: 197 MHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 51.2 bits (121), Expect = 1e-06 Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 14/97 (14%) Frame = +2 Query: 44 SLSQCRMPRYDERDRYGGN-----TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE- 205 S S+ + P+ DE++R + T++++GRL + ++F YG+++ +DM E Sbjct: 137 SRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVER 196 Query: 206 --------FAFVEFSDPRDADEARYNLDGRDFDGSRM 292 +A+VEF +P +A++A ++DG DG + Sbjct: 197 MHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 50.4 bits (119), Expect = 2e-06 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 8/79 (10%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF--------AFVEFSDPRDADEAR 253 NT L++ + TR DL FGRYG + V + +F A+V+F D RDA++A Sbjct: 9 NTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDAL 68 Query: 254 YNLDGRDFDGSRMIVEFAK 310 YNL+ + G ++ ++FA+ Sbjct: 69 YNLNRKWVCGRQIEIQFAQ 87
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 50.1 bits (118), Expect = 3e-06 Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 14/97 (14%) Frame = +2 Query: 44 SLSQCRMPRYDERDRYGGN-----TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE- 205 S S+ + P+ DE++R + T++++GRL + ++F YG+++ +DM + Sbjct: 114 SRSKSKQPKRDEKERKRRSPSPRPTKVHIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDR 173 Query: 206 --------FAFVEFSDPRDADEARYNLDGRDFDGSRM 292 +A+VEF P +A++A ++DG DG + Sbjct: 174 YHPHLSKGYAYVEFEAPEEAEKALKHMDGGQIDGQEI 210
>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)| Length = 197 Score = 49.3 bits (116), Expect = 5e-06 Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 3/73 (4%) Frame = +2 Query: 101 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---FAFVEFSDPRDADEARYNLDGR 271 TR+YVG L + + DLE F +YG++ V + FAFVEF DA++A L+G Sbjct: 7 TRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGS 66 Query: 272 DFDGSRMIVEFAK 310 + GS++ VE +K Sbjct: 67 ELLGSQLRVEISK 79
>NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting suppressor 1| protein) (Nuclear polyadenylated RNA-binding protein 1) Length = 414 Score = 48.9 bits (115), Expect = 6e-06 Identities = 25/84 (29%), Positives = 45/84 (53%) Frame = +2 Query: 59 RMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRD 238 R P + ++ NTRL+V P + +L ++FG +G ++ V + + FAFVEF + Sbjct: 111 RPPMHHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAES 170 Query: 239 ADEARYNLDGRDFDGSRMIVEFAK 310 A +A + G+ F + V ++K Sbjct: 171 AAKAIEEVHGKSFANQPLEVVYSK 194
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 47.8 bits (112), Expect = 1e-05 Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Frame = +2 Query: 95 GNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEA 250 G T L V L RT L +F +YGRV R+ FAFV F D RDA++A Sbjct: 12 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 71 Query: 251 RYNLDGRDFDGSRMIVEFAK 310 +DG DG + V+ A+ Sbjct: 72 MDAMDGAVLDGRELRVQMAR 91
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 47.8 bits (112), Expect = 1e-05 Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Frame = +2 Query: 95 GNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEA 250 G T L V L RT L +F +YGRV R+ FAFV F D RDA++A Sbjct: 11 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 70 Query: 251 RYNLDGRDFDGSRMIVEFAK 310 +DG DG + V+ A+ Sbjct: 71 MDAMDGAVLDGRELRVQMAR 90
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 47.8 bits (112), Expect = 1e-05 Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Frame = +2 Query: 95 GNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEA 250 G T L V L RT L +F +YGRV R+ FAFV F D RDA++A Sbjct: 11 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 70 Query: 251 RYNLDGRDFDGSRMIVEFAK 310 +DG DG + V+ A+ Sbjct: 71 MDAMDGAVLDGRELRVQMAR 90
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 47.8 bits (112), Expect = 1e-05 Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Frame = +2 Query: 95 GNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEA 250 G T L V L RT L +F +YGRV R+ FAFV F D RDA++A Sbjct: 11 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 70 Query: 251 RYNLDGRDFDGSRMIVEFAK 310 +DG DG + V+ A+ Sbjct: 71 MDAMDGAVLDGRELRVQMAR 90
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 47.8 bits (112), Expect = 1e-05 Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Frame = +2 Query: 95 GNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEA 250 G T L V L RT L +F +YGRV R+ FAFV F D RDA++A Sbjct: 11 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 70 Query: 251 RYNLDGRDFDGSRMIVEFAK 310 +DG DG + V+ A+ Sbjct: 71 MDAMDGAVLDGRELRVQMAR 90
>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)| Length = 535 Score = 47.0 bits (110), Expect = 2e-05 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 2/79 (2%) Frame = +2 Query: 77 ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRH--VDMKHEFAFVEFSDPRDADEA 250 E ++ G RLY+G L S +L++LF YG + ++ + FAF++ +A+ A Sbjct: 105 EEIKFSGRNRLYIGNLTSDVTEEELKELFSPYGEISEAFINAEKNFAFLKIDYRANAERA 164 Query: 251 RYNLDGRDFDGSRMIVEFA 307 + +LDGR + + FA Sbjct: 165 KKDLDGRMRKNKPIRIRFA 183
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 46.6 bits (109), Expect = 3e-05 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM------KHEFAFVEFSDPRDADEARYNLD 265 RL+V +P R R DL +FG++G++ V++ F FV F + DAD AR L Sbjct: 117 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH 176 Query: 266 GRDFDGSRMIVEFA 307 G +G ++ V A Sbjct: 177 GTVVEGRKIEVNNA 190
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 46.6 bits (109), Expect = 3e-05 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM------KHEFAFVEFSDPRDADEARYNLD 265 RL+V +P R R DL +FG++G++ V++ F FV F + DAD AR L Sbjct: 122 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH 181 Query: 266 GRDFDGSRMIVEFA 307 G +G ++ V A Sbjct: 182 GTVVEGRKIEVNNA 195
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 46.6 bits (109), Expect = 3e-05 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM------KHEFAFVEFSDPRDADEARYNLD 265 RL+V +P R R DL +FG++G++ V++ F FV F + DAD AR L Sbjct: 118 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH 177 Query: 266 GRDFDGSRMIVEFA 307 G +G ++ V A Sbjct: 178 GTVVEGRKIEVNNA 191
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 45.1 bits (105), Expect = 9e-05 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEAR 253 + RL+V L T+ +LE +F +G++ + + + FA+V+++DP A EA Sbjct: 294 SARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAY 353 Query: 254 YNLDGRDFDG 283 NLDG+ F G Sbjct: 354 RNLDGKIFQG 363 Score = 43.1 bits (100), Expect = 4e-04 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 7/76 (9%) Frame = +2 Query: 101 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEFSDPRDADEARYN 259 T++ + LP + +D+ LFG YG++R V + + F F +F R+A+ A Sbjct: 697 TKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMDA 756 Query: 260 LDGRDFDGSRMIVEFA 307 L G R+++EFA Sbjct: 757 LKNTHLLGRRLVLEFA 772
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 45.1 bits (105), Expect = 9e-05 Identities = 23/80 (28%), Positives = 47/80 (58%), Gaps = 7/80 (8%) Frame = +2 Query: 92 GGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF-------AFVEFSDPRDADEA 250 G ++++ + LP +DL +LFG +G+++ V + +F AFVEF+ ++A+ A Sbjct: 714 GKSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARGFAFVEFNLMKEAETA 773 Query: 251 RYNLDGRDFDGSRMIVEFAK 310 L+G G R+++++A+ Sbjct: 774 MSQLEGVHLLGRRLVMQYAE 793 Score = 30.4 bits (67), Expect = 2.4 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 8/68 (11%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYN 259 RL++ + D LF +YG + V + + F +V+F DA A + Sbjct: 311 RLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRS 370 Query: 260 LDGRDFDG 283 LD + F G Sbjct: 371 LDKQIFQG 378 Score = 29.6 bits (65), Expect = 4.1 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 7/77 (9%) Frame = +2 Query: 101 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM-------KHEFAFVEFSDPRDADEARYN 259 +RL V LP L + F + G V V + +FAF+ + A+ A Sbjct: 2 SRLIVKGLPKYYTEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVKY 61 Query: 260 LDGRDFDGSRMIVEFAK 310 + D +R+ VEFAK Sbjct: 62 FNKSFIDTARIEVEFAK 78
>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 44.7 bits (104), Expect = 1e-04 Identities = 22/68 (32%), Positives = 38/68 (55%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 283 +++VG + + +++L LF R GRV D+ ++AFV DA A L+G++ G Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139 Query: 284 SRMIVEFA 307 R+ VE + Sbjct: 140 KRINVELS 147 Score = 28.9 bits (63), Expect = 6.9 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Frame = +2 Query: 104 RLYVGRLPSRTRT-RDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF- 277 +++VG + T +L LF YG V + +FAFV + A A L G + Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61 Query: 278 DGSRMIVEFAK 310 G ++VE ++ Sbjct: 62 PGRALVVEMSR 72
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 44.7 bits (104), Expect = 1e-04 Identities = 22/68 (32%), Positives = 38/68 (55%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 283 +++VG + + +++L LF R GRV D+ ++AFV DA A L+G++ G Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139 Query: 284 SRMIVEFA 307 R+ VE + Sbjct: 140 KRINVELS 147 Score = 29.3 bits (64), Expect = 5.3 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Frame = +2 Query: 104 RLYVGRLPSRTRT-RDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF- 277 +++VG + T +L LF YG V + +FAFV + A A L G + Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELR 61 Query: 278 DGSRMIVEFAK 310 G ++VE ++ Sbjct: 62 PGRALVVEMSR 72
>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)| (RRM-containing coactivator activator/modulator) (Synaptotagmin-interacting protein) (SYT-interacting protein) Length = 669 Score = 44.7 bits (104), Expect = 1e-04 Identities = 22/68 (32%), Positives = 38/68 (55%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 283 +++VG + + +++L LF R GRV D+ ++AFV DA A L+G++ G Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139 Query: 284 SRMIVEFA 307 R+ VE + Sbjct: 140 KRINVELS 147 Score = 28.9 bits (63), Expect = 6.9 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Frame = +2 Query: 104 RLYVGRLPSRTRT-RDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF- 277 +++VG + T +L LF YG V + +FAFV + A A L G + Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61 Query: 278 DGSRMIVEFAK 310 G ++VE ++ Sbjct: 62 PGRALVVEMSR 72
>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 44.7 bits (104), Expect = 1e-04 Identities = 22/68 (32%), Positives = 38/68 (55%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 283 +++VG + + +++L LF R GRV D+ ++AFV DA A L+G++ G Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139 Query: 284 SRMIVEFA 307 R+ VE + Sbjct: 140 KRINVELS 147 Score = 29.3 bits (64), Expect = 5.3 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Frame = +2 Query: 104 RLYVGRLPSRTRT-RDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF- 277 +++VG + T +L LF YG V + +FAFV + A A L G + Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELR 61 Query: 278 DGSRMIVEFAK 310 G ++VE ++ Sbjct: 62 PGRALVVEMSR 72
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 44.3 bits (103), Expect = 2e-04 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEAR 253 N L V L T RDL ++F +YG + V + ++ FAFV F + DA EA+ Sbjct: 117 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 176 Query: 254 YNLDGRDFDGSRMIVEFA 307 +G + DG R+ V+F+ Sbjct: 177 ERANGMELDGRRIRVDFS 194
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 44.3 bits (103), Expect = 2e-04 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEAR 253 N L V L T RDL ++F +YG + V + ++ FAFV F + DA EA+ Sbjct: 117 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 176 Query: 254 YNLDGRDFDGSRMIVEFA 307 +G + DG R+ V+F+ Sbjct: 177 ERANGMELDGRRIRVDFS 194
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 44.3 bits (103), Expect = 2e-04 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEAR 253 N L V L T RDL ++F +YG + V + ++ FAFV F + DA EA+ Sbjct: 117 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 176 Query: 254 YNLDGRDFDGSRMIVEFA 307 +G + DG R+ V+F+ Sbjct: 177 ERANGMELDGRRIRVDFS 194
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 43.9 bits (102), Expect = 2e-04 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 6/77 (7%) Frame = +2 Query: 95 GNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM------KHEFAFVEFSDPRDADEARY 256 G RL+V +P R R DL+ +F ++G V V++ F FV P+DA+ AR Sbjct: 151 GPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQ 210 Query: 257 NLDGRDFDGSRMIVEFA 307 L G +G ++ V A Sbjct: 211 ELHGSMIEGRKIEVNCA 227
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 43.1 bits (100), Expect = 4e-04 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 7/76 (9%) Frame = +2 Query: 101 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEFSDPRDADEARYN 259 T++ + LP + +D+ LFG YG++R V + + F F +F R+A+ A Sbjct: 702 TKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMDA 761 Query: 260 LDGRDFDGSRMIVEFA 307 L G R+++EFA Sbjct: 762 LKNTHLLGRRLVLEFA 777 Score = 43.1 bits (100), Expect = 4e-04 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 8/73 (10%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEAR 253 ++RL+V LP DLE +F ++G++ + + + FA+V++ +P A +A Sbjct: 300 SSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAY 359 Query: 254 YNLDGRDFDGSRM 292 LDG+ F G M Sbjct: 360 KELDGKHFQGRLM 372 Score = 32.7 bits (73), Expect = 0.48 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%) Frame = +2 Query: 80 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM--KHEFAFVEFSDPRDADEAR 253 + R GNT + V + DL LF YG++ + M A VEF+ P +A +A Sbjct: 477 KQRERGNTAILVKNFSYGVKVDDLRKLFEPYGQITRLLMPPSGTIAIVEFARPDEAQKAF 536 Query: 254 YNLDGRDFDGSRMIVEFA 307 L R S + +E A Sbjct: 537 KGLAYRKVGDSILFLEKA 554
>NONA_DROLR (Q9GRX4) Protein no-on-transient A| Length = 698 Score = 42.7 bits (99), Expect = 5e-04 Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 4/99 (4%) Frame = +2 Query: 23 AARVSSASLSQCRMPRYD--ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHV-- 190 A R+ S S +P + + ++ G RLYVG L + +L ++F YG + + Sbjct: 253 AQRLRSISGPTHELPPIEVAQETKFSGRNRLYVGNLTNDITDEELREMFKPYGEIGEIFS 312 Query: 191 DMKHEFAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFA 307 +++ F F++ +A++A+ LDG G ++ V FA Sbjct: 313 NLEKNFTFLKVDYHINAEKAKRALDGSMRKGRQLRVRFA 351
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 42.7 bits (99), Expect = 5e-04 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 7/76 (9%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHV-------DMKHEFAFVEFSDPRDADEARYNL 262 +L++G L T + L+ +FG++G + V FAF+ F +P DA A ++ Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDM 68 Query: 263 DGRDFDGSRMIVEFAK 310 +G+ G + VE AK Sbjct: 69 NGKSLHGKAIKVEQAK 84
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 42.4 bits (98), Expect = 6e-04 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 8/90 (8%) Frame = +2 Query: 65 PRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVE 220 P R + + R+YVG LP T LE LF +G+V R F FV Sbjct: 137 PERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVT 196 Query: 221 FSDPRDADEARYNLDGRDFDGSRMIVEFAK 310 S + ++A LDG+ DG + V A+ Sbjct: 197 MSSESEVNDAIAALDGQTLDGRAVRVNVAE 226 Score = 35.4 bits (80), Expect = 0.074 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 8/76 (10%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 259 +L+VG LP + L +F G V R D F FV S +A++A Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 115 Query: 260 LDGRDFDGSRMIVEFA 307 L+G D DG ++ V A Sbjct: 116 LNGYDMDGRQLTVNKA 131
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 42.0 bits (97), Expect = 8e-04 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEAR 253 NT L V L T RDL ++F RYG + V++ ++ FAFV F D+ EA Sbjct: 118 NTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAM 177 Query: 254 YNLDGRDFDGSRMIVEFA 307 +G + DG R+ V+++ Sbjct: 178 ERANGMELDGRRIRVDYS 195
>HNRPC_XENLA (P19600) Heterogeneous nuclear ribonucleoprotein C (hnRNP core| protein C) Length = 282 Score = 42.0 bits (97), Expect = 8e-04 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Frame = +2 Query: 98 NTRLYVGRLPSRT-RTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRD 274 N+R+++G L + + D+E +F +YG++ + FAFV+FS+ R A A DGR Sbjct: 16 NSRVFIGNLNTLVVKKTDVEAIFSKYGKIVGCSVHKGFAFVQFSNERTARTAVAGEDGRM 75 Query: 275 FDGSRMIVEFA 307 G + + A Sbjct: 76 IAGQVLDINLA 86
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 42.0 bits (97), Expect = 8e-04 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 7/96 (7%) Frame = +2 Query: 44 SLSQCRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF----- 208 S Q +P+ + + + ++ V LP +D+ +LF +G+++ V + +F Sbjct: 693 SHKQSSLPKTSKGSKKKISGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSAR 752 Query: 209 --AFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 310 AFVEF P +A+ A L G G R+++++A+ Sbjct: 753 GFAFVEFLLPSEAENAMDQLQGVHLLGRRLVMQYAE 788 Score = 31.2 bits (69), Expect = 1.4 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 8/68 (11%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYN 259 RL++ + D + LF YG + V + + FA+V F DP A A Sbjct: 302 RLFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIE 361 Query: 260 LDGRDFDG 283 LD + F G Sbjct: 362 LDKQIFQG 369
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 42.0 bits (97), Expect = 8e-04 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 7/76 (9%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF-------AFVEFSDPRDADEARYNL 262 ++ V LP +D+ +LF +G+++ V + +F AFVEF P++A+ A L Sbjct: 753 KIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQL 812 Query: 263 DGRDFDGSRMIVEFAK 310 G G R+++EF + Sbjct: 813 QGVHLLGRRLVMEFVE 828
>YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in chromosome III| Length = 654 Score = 42.0 bits (97), Expect = 8e-04 Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 2/47 (4%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDM--KHEFAFVEFSDPRDA 241 +++G LPS +++E+ FG++G++ H+ + K AFV F + RDA Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDA 347
>RALY_HUMAN (Q9UKM9) RNA-binding protein Raly (hnRNP associated with lethal| yellow homolog) (Autoantigen p542) Length = 306 Score = 42.0 bits (97), Expect = 8e-04 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Frame = +2 Query: 98 NTRLYVGRLPSR-TRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRD 274 N+R+++G L + + D+E +F +YGRV + +AFV++S+ R A A +GR Sbjct: 20 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRV 79 Query: 275 FDGSRMIVEFA 307 G + + A Sbjct: 80 LAGQTLDINMA 90
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 42.0 bits (97), Expect = 8e-04 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEAR 253 NT L V L T RDL ++F RYG + V++ ++ FAFV F D+ EA Sbjct: 116 NTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAM 175 Query: 254 YNLDGRDFDGSRMIVEFA 307 +G + DG R+ V+++ Sbjct: 176 ERANGMELDGRRIRVDYS 193
>RNP1_YEAST (P32385) Ribonucleoprotein 1| Length = 249 Score = 41.6 bits (96), Expect = 0.001 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 9/74 (12%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLF-GRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYN 259 LYVG LP R +DL DLF YG++ +K + FAF+EF + + + + Sbjct: 37 LYVGNLPKNCRKQDLRDLFEPNYGKITINMLKKKPLKKPLKRFAFIEFQEGVNLKKVKEK 96 Query: 260 LDGRDFDGSRMIVE 301 ++G+ F ++++E Sbjct: 97 MNGKIFMNEKIVIE 110
>NONA_DROVI (Q9GRW7) Protein no-on-transient A| Length = 697 Score = 41.6 bits (96), Expect = 0.001 Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Frame = +2 Query: 77 ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHV--DMKHEFAFVEFSDPRDADEA 250 + ++ G RLYVG L + +L ++F YG + + +++ F F++ +A++A Sbjct: 277 QETKFSGRNRLYVGNLTNDITDEELREMFKPYGEIGEIFSNLEKNFTFLKVDYHINAEKA 336 Query: 251 RYNLDGRDFDGSRMIVEFA 307 + LDG G + V FA Sbjct: 337 KRPLDGSMRKGRHVRVRFA 355
>NONA_DROME (Q04047) Protein no-on-transient A (Puff-specific protein Bj6)| Length = 700 Score = 41.2 bits (95), Expect = 0.001 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Frame = +2 Query: 86 RYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHV--DMKHEFAFVEFSDPRDADEARYN 259 ++ G RLYVG L + +L ++F YG + + ++ F F++ +A++A+ Sbjct: 297 KFSGRNRLYVGNLTNDITDDELREMFKPYGEISEIFSNLDKNFTFLKVDYHPNAEKAKRA 356 Query: 260 LDGRDFDGSRMIVEFA 307 LDG G ++ V FA Sbjct: 357 LDGSMRKGRQLRVRFA 372
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 41.2 bits (95), Expect = 0.001 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 12/81 (14%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE------------FAFVEFSDPRDADE 247 R++VGRL + T+ ++ LF G VR V + AFV F++ D D+ Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104 Query: 248 ARYNLDGRDFDGSRMIVEFAK 310 A L+G+ D ++V+ A+ Sbjct: 105 AIETLNGKTLDDREIVVQKAR 125
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 41.2 bits (95), Expect = 0.001 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 7/79 (8%) Frame = +2 Query: 92 GGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEFSDPRDADEA 250 GG+T++ + LP RD+ DLF G+++ V + + F FVE+S R+A A Sbjct: 716 GGSTKILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDNTTRGFGFVEYSTVREAQSA 775 Query: 251 RYNLDGRDFDGSRMIVEFA 307 L G ++++++ Sbjct: 776 MEALKHTHLLGRHLVLQWS 794 Score = 30.4 bits (67), Expect = 2.4 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 8/68 (11%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYN 259 RL++ LP ++ F +G V+ V + + AFV FSDP A A Sbjct: 315 RLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAYRA 374 Query: 260 LDGRDFDG 283 DG F G Sbjct: 375 KDGSTFQG 382
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 41.2 bits (95), Expect = 0.001 Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 8/80 (10%) Frame = +2 Query: 95 GNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEA 250 G T L + L +T DL F RYG + V + + F FV F + RDA+ A Sbjct: 17 GLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHA 76 Query: 251 RYNLDGRDFDGSRMIVEFAK 310 DG+ DG + V AK Sbjct: 77 LDRTDGKLVDGRELRVTLAK 96
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 41.2 bits (95), Expect = 0.001 Identities = 19/68 (27%), Positives = 36/68 (52%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDGS 286 L+V L + LE F ++G++ V ++AF+ F + A +A ++G+D +G Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGE 399 Query: 287 RMIVEFAK 310 + + FAK Sbjct: 400 NIEIVFAK 407
>PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 41.2 bits (95), Expect = 0.001 Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 8/76 (10%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 262 L+V +L T+ DLE +F R+G++ ++ + +AF+EF +D ++A + + Sbjct: 250 LFVCKLNPVTQDEDLELIFSRFGKILSCEVIRDKRTGDSLQYAFIEFESQKDCEQAYFKM 309 Query: 263 DGRDFDGSRMIVEFAK 310 G D R+ V+F++ Sbjct: 310 QGVLIDDHRIHVDFSQ 325
>RALY_MOUSE (Q64012) RNA-binding protein Raly (hnRNP associated with lethal| yellow protein) (Maternally expressed hnRNP C-related protein) Length = 312 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Frame = +2 Query: 98 NTRLYVGRLPSRT-RTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRD 274 N+R+++G L + + D+E +F +YGRV + +AFV++++ R A A +GR Sbjct: 20 NSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERHARAAVLGENGRV 79 Query: 275 FDGSRMIVEFA 307 G + + A Sbjct: 80 LAGQTLDINMA 90
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 40.8 bits (94), Expect = 0.002 Identities = 19/68 (27%), Positives = 36/68 (52%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDGS 286 L+V L + LE F ++G++ V ++AF+ F + A +A ++G+D +G Sbjct: 250 LFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGE 309 Query: 287 RMIVEFAK 310 + + FAK Sbjct: 310 NIEIVFAK 317
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 40.8 bits (94), Expect = 0.002 Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 7/76 (9%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF-------AFVEFSDPRDADEARYNL 262 ++ V LP +D+ +LF +G+++ V + +F AFVEF P++A+ A L Sbjct: 764 KIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQL 823 Query: 263 DGRDFDGSRMIVEFAK 310 G G R+++++A+ Sbjct: 824 HGVHLLGRRLVMQYAE 839 Score = 28.9 bits (63), Expect = 6.9 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 8/68 (11%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYN 259 RL++ + ++ D LF +G + V + + FA+V F D ++A A Sbjct: 346 RLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVE 405 Query: 260 LDGRDFDG 283 LD + F G Sbjct: 406 LDKQIFQG 413
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 40.8 bits (94), Expect = 0.002 Identities = 19/68 (27%), Positives = 36/68 (52%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDGS 286 L+V L + LE F ++G++ V ++AF+ F + A +A ++G+D +G Sbjct: 340 LFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGE 399 Query: 287 RMIVEFAK 310 + + FAK Sbjct: 400 NIEIVFAK 407
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 40.8 bits (94), Expect = 0.002 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 259 +L+VG L T + LE +F +YG++ R F FV F + DA +A Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 260 LDGRDFDGSRMIVEFA 307 ++G+ DG ++ V+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 40.8 bits (94), Expect = 0.002 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 259 +L+VG L T + LE +F +YG++ R F FV F + DA +A Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 260 LDGRDFDGSRMIVEFA 307 ++G+ DG ++ V+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 40.4 bits (93), Expect = 0.002 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 8/77 (10%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 259 R+YVG LP LE LF +G+V R F FV SD + +EA Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304 Query: 260 LDGRDFDGSRMIVEFAK 310 LDG++ +G + V A+ Sbjct: 305 LDGQNLEGRAIRVNVAE 321
>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor| 59 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF59) Length = 517 Score = 40.4 bits (93), Expect = 0.002 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 8/95 (8%) Frame = +2 Query: 47 LSQCRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM--------KH 202 +SQ R Y + D ++Y+ LP + +L +G + + Sbjct: 292 VSQKRSDDYAKNDVLDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSK 351 Query: 203 EFAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFA 307 F F EF +P DA+ A LDG+D G+++ +FA Sbjct: 352 GFCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFA 386
>NAB3_YEAST (P38996) Nuclear polyadenylated RNA-binding protein 3| Length = 802 Score = 40.4 bits (93), Expect = 0.002 Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Frame = +2 Query: 101 TRLYVGRLPSRTRTR-DLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEA 250 +RL++G LP + ++ DL +F YG + +++K+ F F++F +P+ +A Sbjct: 330 SRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDA 380
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 12/84 (14%) Frame = +2 Query: 65 PRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVE 220 PR ++ + GG ++++G LPS DL F RYG+V V + ++ F F+ Sbjct: 84 PRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLS 143 Query: 221 FSDPRDAD----EARYNLDGRDFD 280 F + + E NL+G+ + Sbjct: 144 FEEESSVEHVTNERYINLNGKQVE 167
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 40.0 bits (92), Expect = 0.003 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 12/106 (11%) Frame = +2 Query: 29 RVSSASLSQCRMPRYDERDR----YGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM 196 +++ AS+ Q E++R RL++ L DL+ LFG +G++ V M Sbjct: 295 KIADASMLQKAENNVSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHM 354 Query: 197 KHE--------FAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 310 + FA+++F D DA A LD + F G + V AK Sbjct: 355 PIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLHVLPAK 400
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 40.0 bits (92), Expect = 0.003 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 7/78 (8%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF-------AFVEFSDPRDADEARY 256 N ++ V LP +D+ +LF +G+++ V + +F AFVEF P++A+ A Sbjct: 737 NGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFVLPKEAENAMD 796 Query: 257 NLDGRDFDGSRMIVEFAK 310 L G G R++++ A+ Sbjct: 797 QLQGVHLLGRRLVMQPAE 814 Score = 30.8 bits (68), Expect = 1.8 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 8/68 (11%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYN 259 RL++ + + D + LF YG ++ V + + FA+V F+ P +A +A Sbjct: 326 RLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIE 385 Query: 260 LDGRDFDG 283 LD + F G Sbjct: 386 LDKQIFQG 393
>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3664 Score = 40.0 bits (92), Expect = 0.003 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKH-----EFAFVEFSDPRDADEARYNLDGR 271 L++G L T DL ++F R+G + +D+K ++AF+++ D +A +DG Sbjct: 440 LFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKMDGE 499 Query: 272 DFDGSRMIVEFAK 310 +R+ + F K Sbjct: 500 YLGNNRLKLGFGK 512 Score = 33.1 bits (74), Expect = 0.37 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 7/60 (11%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEFSDPRDADEARYNLD 265 L+VG LP R + + F RYGRV V + + AFV+F D + A +A +++ Sbjct: 8 LWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQKAHNSVN 67
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 40.0 bits (92), Expect = 0.003 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 10/87 (11%) Frame = +2 Query: 68 RYDERDRYGGNTR---LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFV 217 R ERD T+ +YV L T DL++ FG YG++ + + F FV Sbjct: 201 RRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFV 260 Query: 218 EFSDPRDADEARYNLDGRDFDGSRMIV 298 F + DA A +L+G FD V Sbjct: 261 NFENADDAARAVESLNGHKFDDKEWYV 287 Score = 34.3 bits (77), Expect = 0.16 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 8/65 (12%) Frame = +2 Query: 95 GNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEA 250 GNT LYVG L L D FG+ G V V + + + +V F++P+DA A Sbjct: 34 GNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARA 93 Query: 251 RYNLD 265 L+ Sbjct: 94 IQELN 98
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 40.0 bits (92), Expect = 0.003 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 259 +L+VG L T + LE +F +YG++ R F FV F + DA +A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 260 LDGRDFDGSRMIVEFA 307 ++G+ DG ++ V+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 40.0 bits (92), Expect = 0.003 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 259 +L+VG L T + LE +F +YG++ R F FV F + DA +A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 260 LDGRDFDGSRMIVEFA 307 ++G+ DG ++ V+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 40.0 bits (92), Expect = 0.003 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 259 +L+VG L T + LE +F +YG++ R F FV F + DA +A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 260 LDGRDFDGSRMIVEFA 307 ++G+ DG ++ V+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 40.0 bits (92), Expect = 0.003 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKH-----EFAFVEFSDPRDADEARYNLDGR 271 L++G L T DL ++F R+G + +D+K ++AF+++ D +A +DG Sbjct: 441 LFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKMDGE 500 Query: 272 DFDGSRMIVEFAK 310 +R+ + F K Sbjct: 501 YLGNNRLKLGFGK 513 Score = 33.1 bits (74), Expect = 0.37 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 7/60 (11%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEFSDPRDADEARYNLD 265 L+VG LP R + + F RYGRV V + + AFV+F D + A +A +++ Sbjct: 8 LWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQKAHNSVN 67
>PPIL4_MOUSE (Q9CXG3) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 40.0 bits (92), Expect = 0.003 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 262 L+V +L T DLE +F R+G +R ++ + +AF+EF D ++A + + Sbjct: 242 LFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKM 301 Query: 263 DGRDFDGSRMIVEFAK 310 D D R+ V+F++ Sbjct: 302 DNVLIDDRRIHVDFSQ 317
>PPIL4_HUMAN (Q8WUA2) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 40.0 bits (92), Expect = 0.003 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 262 L+V +L T DLE +F R+G +R ++ + +AF+EF D ++A + + Sbjct: 242 LFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKM 301 Query: 263 DGRDFDGSRMIVEFAK 310 D D R+ V+F++ Sbjct: 302 DNVLIDDRRIHVDFSQ 317
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 39.7 bits (91), Expect = 0.004 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 8/83 (9%) Frame = +2 Query: 74 DERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSD 229 +E + + RL+V LP + DLE LF +YG + + + FAF+ F Sbjct: 393 EEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMF 452 Query: 230 PRDADEARYNLDGRDFDGSRMIV 298 P A +A +DG+ F G + V Sbjct: 453 PEHAVKAYSEVDGQVFQGRMLHV 475 Score = 35.8 bits (81), Expect = 0.057 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 7/77 (9%) Frame = +2 Query: 101 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMK-------HEFAFVEFSDPRDADEARYN 259 +RL V LP+ + LF +G + +K +F F+ F +A +A+ + Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKH 61 Query: 260 LDGRDFDGSRMIVEFAK 310 + D SR+ VEF K Sbjct: 62 FNKSFIDTSRITVEFCK 78 Score = 34.3 bits (77), Expect = 0.16 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 11/103 (10%) Frame = +2 Query: 35 SSASLSQCRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--- 205 SSA + + +E + G T L++ L T L+++F + G V+ + + Sbjct: 709 SSAKMEEEEEEEEEEEESLPGCT-LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNK 767 Query: 206 --------FAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 310 F FVE+ P A +A L G DG ++ V ++ Sbjct: 768 AGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISE 810 Score = 32.3 bits (72), Expect = 0.63 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Frame = +2 Query: 101 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKH--EFAFVEFSDPRDADEARYNLDGRD 274 T + V LP+ T +L++ FGR+G + V + A VEF +P +A +A +L Sbjct: 587 TVILVKNLPAGTLAAELQETFGRFGSLGRVLLPEGGTTAIVEFLEPLEARKAFRHLAYSK 646 Query: 275 FDGSRMIVEFA 307 F + +E+A Sbjct: 647 FHHVPLYLEWA 657
>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 494 Score = 39.7 bits (91), Expect = 0.004 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 262 L+V +L T DLE +F R+G++ ++ + +AF+EF D + +EA + Sbjct: 255 LFVCKLNPVTTDEDLELIFSRFGKILSCEVIRDQKTGDSLQYAFIEFEDKKSCEEAYSKM 314 Query: 263 DGRDFDGSRMIVEFAK 310 D D R+ V+F++ Sbjct: 315 DSVLIDDRRIHVDFSQ 330
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 39.7 bits (91), Expect = 0.004 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 8/77 (10%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 259 R +VG L T R LE F +YG V R F FV F D + +A Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68 Query: 260 LDGRDFDGSRMIVEFAK 310 ++G+D DG + V A+ Sbjct: 69 MNGQDLDGRSITVNEAQ 85
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 39.7 bits (91), Expect = 0.004 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 8/77 (10%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 259 R+YVG +P LE LF +G+V R F FV + + +A N Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIAN 290 Query: 260 LDGRDFDGSRMIVEFAK 310 LDG+ DG + V A+ Sbjct: 291 LDGQSLDGRTIRVNVAE 307
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 39.3 bits (90), Expect = 0.005 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 7/78 (8%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEFSDPRDADEARY 256 N +Y LP T DL DLF G+V + +++++ A VE+ + DAD Sbjct: 350 NRLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSKGAPTGIAVVEYDNVDDADVCIE 409 Query: 257 NLDGRDFDGSRMIVEFAK 310 L+ ++ G + + +AK Sbjct: 410 RLNNYNYGGCDLDISYAK 427 Score = 32.3 bits (72), Expect = 0.63 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 6/82 (7%) Frame = +2 Query: 71 YDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM------KHEFAFVEFSDP 232 Y+E+ + ++VG L + DL + F + G+V D+ VEF++ Sbjct: 126 YEEKVNRNYSNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSRGHHRGMGTVEFTNS 185 Query: 233 RDADEARYNLDGRDFDGSRMIV 298 D D A DG F ++ V Sbjct: 186 DDVDRAIRQYDGAFFMDRKIFV 207
>HNRPC_MOUSE (Q9Z204) Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 /| hnRNP C2) Length = 313 Score = 39.3 bits (90), Expect = 0.005 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Frame = +2 Query: 98 NTRLYVGRLPSRT-RTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRD 274 N+R+++G L + + D+E +F +YG++ + FAFV++ + R+A A DGR Sbjct: 15 NSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRM 74 Query: 275 FDGSRMIVEFA 307 G + + A Sbjct: 75 IAGQVLDINLA 85
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 39.3 bits (90), Expect = 0.005 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 8/77 (10%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 259 R+YVG +P LE +F +G+V R F FV S + EA N Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIAN 251 Query: 260 LDGRDFDGSRMIVEFAK 310 LDG+ DG + V A+ Sbjct: 252 LDGQTLDGRTIRVNAAE 268 Score = 32.3 bits (72), Expect = 0.63 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 13/71 (18%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEA- 250 + +L+VG LP + L LF + G V R D F FV S +AD+A Sbjct: 96 DAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAV 155 Query: 251 ----RYNLDGR 271 +Y+L+GR Sbjct: 156 ELYSQYDLNGR 166
>TRA2_DROME (P19018) Transformer-2 sex-determining protein| Length = 264 Score = 39.3 bits (90), Expect = 0.005 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 8/105 (7%) Frame = +2 Query: 17 PPAARVSSASLSQCRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM 196 PP R S S+ R + R+ + + V L + T + +LF +YG + + M Sbjct: 69 PPEPRHRSGRSSRDRERMHKSREHPQASRCIGVFGLNTNTSQHKVRELFNKYGPIERIQM 128 Query: 197 --------KHEFAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFA 307 F F+ F DA A+ + G + DG R+ V+F+ Sbjct: 129 VIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVDFS 173
>HNRPC_HUMAN (P07910) Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 /| hnRNP C2) Length = 306 Score = 39.3 bits (90), Expect = 0.005 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Frame = +2 Query: 98 NTRLYVGRLPSRT-RTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRD 274 N+R+++G L + + D+E +F +YG++ + FAFV++ + R+A A DGR Sbjct: 15 NSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRM 74 Query: 275 FDGSRMIVEFA 307 G + + A Sbjct: 75 IAGQVLDINLA 85
>SRP1_SCHPO (Q10193) Pre-mRNA-splicing factor srp1| Length = 275 Score = 38.9 bits (89), Expect = 0.007 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 9/77 (11%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDM-------KHEFAFVEFSDPRDADEARYNLD 265 LYV R R+L F +G + D+ FAFVE+ D RDA++A Y + Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVH 68 Query: 266 GRDFD--GSRMIVEFAK 310 GR + G + VE+AK Sbjct: 69 GRRLERGGGVLRVEWAK 85
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 38.9 bits (89), Expect = 0.007 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 8/76 (10%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 259 +L+VG L T + LED F +G + R F F+ F++P A +A Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66 Query: 260 LDGRDFDGSRMIVEFA 307 ++G DG ++ V+ A Sbjct: 67 MNGESLDGRQIRVDHA 82
>PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 459 Score = 38.9 bits (89), Expect = 0.007 Identities = 20/76 (26%), Positives = 42/76 (55%), Gaps = 8/76 (10%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 262 L+V +L T+ DL+ +F R+G + ++ + +AF+EF + +D ++A + + Sbjct: 250 LFVCKLNPVTQDEDLQLIFSRFGPILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKM 309 Query: 263 DGRDFDGSRMIVEFAK 310 G D R+ V+F++ Sbjct: 310 QGVLIDDHRIHVDFSQ 325
>PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 551 Score = 38.9 bits (89), Expect = 0.007 Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 8/76 (10%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDM--------KHEFAFVEFSDPRDADEARYNL 262 L+V +L TR+ DLE +F R+G++ ++ ++AF+EF DA+ A + + Sbjct: 264 LFVCKLNPVTRSDDLELIFSRFGKILSCEVIKDKKTGDSLQYAFIEFDKKDDAERAYFKM 323 Query: 263 DGRDFDGSRMIVEFAK 310 D R+ V+F++ Sbjct: 324 QNVLVDDRRIWVDFSQ 339
>HNRCL_HUMAN (O60812) Heterogeneous nuclear ribonucleoprotein C-like 1 (hnRNP| core protein C-like 1) Length = 293 Score = 38.9 bits (89), Expect = 0.007 Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Frame = +2 Query: 74 DERDRYGGNTRLYVGRLPSRT-RTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEA 250 ++ D + N+R+++G L + + D+E +F +YG++ + FAFV++ ++A A Sbjct: 7 NKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAA 66 Query: 251 RYNLDGR 271 DGR Sbjct: 67 VAGEDGR 73
>PPIL4_GIBZE (Q4IE79) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 605 Score = 38.9 bits (89), Expect = 0.007 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 262 L+V +L T DLE +FGR+G++ ++ + +AF+E+ D + A + + Sbjct: 253 LFVCKLNPVTGDEDLELIFGRFGKILSCEVIRDQKTGDSLQYAFIEYEDKASCEAAYFKM 312 Query: 263 DGRDFDGSRMIVEFAK 310 G D R+ V+F++ Sbjct: 313 QGVLIDDRRIHVDFSQ 328
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3| RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 282 Score = 38.5 bits (88), Expect = 0.009 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 8/86 (9%) Frame = +2 Query: 77 ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDP 232 ERD + L V L TR +L DLF R+G ++ V + + FAFV + D Sbjct: 197 ERD---DSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDR 253 Query: 233 RDADEARYNLDGRDFDGSRMIVEFAK 310 A +AR LDG ++ + EF+K Sbjct: 254 DCAIKARDRLDGYGWNNLILRCEFSK 279
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 38.5 bits (88), Expect = 0.009 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 8/87 (9%) Frame = +2 Query: 65 PRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVE 220 P D+ + L+V R+ T L F YG ++ + M + +AF+E Sbjct: 91 PHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIE 150 Query: 221 FSDPRDADEARYNLDGRDFDGSRMIVE 301 + RD A + DG+ DG R++V+ Sbjct: 151 YEHERDMHSAYKHADGKKIDGRRVLVD 177
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 38.5 bits (88), Expect = 0.009 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 8/76 (10%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 259 +L++G L T LE F +YGR+ R F FV F + DA +A Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65 Query: 260 LDGRDFDGSRMIVEFA 307 ++G+ DG ++ V+ A Sbjct: 66 MNGKSVDGRQIRVDQA 81
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 38.5 bits (88), Expect = 0.009 Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRY--GRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFD 280 LYV L T +E F G V V ++AFV FS+ DA EA L+G+ D Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD 292 Query: 281 GSRMIVEFAK 310 GS + V AK Sbjct: 293 GSPIEVTLAK 302
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 38.5 bits (88), Expect = 0.009 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFG--RYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFD 280 LYV L T +E F + G V V ++AFV FS+ DA EA L+G+ D Sbjct: 233 LYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD 292 Query: 281 GSRMIVEFAK 310 GS + V AK Sbjct: 293 GSPIEVTLAK 302
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 38.5 bits (88), Expect = 0.009 Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRY--GRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFD 280 LYV L T +E F G V V ++AFV FS+ DA EA L+G+ D Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD 292 Query: 281 GSRMIVEFAK 310 GS + V AK Sbjct: 293 GSPIEVTLAK 302
>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 38.5 bits (88), Expect = 0.009 Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 8/76 (10%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 262 L+V +L T+ DL +F R+G + ++ + +AF+EF + +D ++A + + Sbjct: 250 LFVCKLNPVTQDEDLHLIFSRFGTILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKM 309 Query: 263 DGRDFDGSRMIVEFAK 310 G D R+ V+F++ Sbjct: 310 QGVLIDDHRIHVDFSQ 325
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 38.5 bits (88), Expect = 0.009 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFG--RYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFD 280 LYV L T +E F + G V V ++AFV FS+ DA EA L+G+ D Sbjct: 233 LYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD 292 Query: 281 GSRMIVEFAK 310 GS + V AK Sbjct: 293 GSPIEVTLAK 302
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 38.1 bits (87), Expect = 0.011 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 8/75 (10%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYN 259 RLYVG LP + L ++F G V +V++ ++ FAFV +A EA Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174 Query: 260 LDGRDFDGSRMIVEF 304 DG G + V F Sbjct: 175 FDGSQVGGRTVKVNF 189
>PTBP1_RAT (Q00438) Polypyrimidine tract-binding protein 1 (PTB)| (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) (Pyrimidine-binding protein) (PYBP) Length = 555 Score = 38.1 bits (87), Expect = 0.011 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 4/104 (3%) Frame = +2 Query: 11 LSPPAARVSSASLSQCRMPRYDERDRYGGNTRLYVGRL-PSRTRTRDLEDLFGRYGRVRH 187 L+ P+A ++A+ + +P GN+ L V L P R + L LFG YG V+ Sbjct: 335 LAIPSAAAAAAAAGRIAIPGLAG----AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQR 390 Query: 188 VDM---KHEFAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 310 V + K E A VE +D A A +L+G G + + +K Sbjct: 391 VKILFNKKENALVEMADGSQAQLAMSHLNGHKLHGKSVRITLSK 434
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 38.1 bits (87), Expect = 0.011 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 8/95 (8%) Frame = +2 Query: 50 SQCRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------- 205 + C P D + T L V LP +L+ LFG G + + + Sbjct: 23 NNCSSP-VDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81 Query: 206 FAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 310 + FV + DP+DA++A L+G + V +A+ Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 116 Score = 34.3 bits (77), Expect = 0.16 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 10/80 (12%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEAR 253 + LYV LP ++LE LF +YGR+ + + F+ F +A+EA Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 Query: 254 YNLDGRDFDGSR--MIVEFA 307 L+G+ G+ + V+FA Sbjct: 184 KGLNGQKPPGATEPITVKFA 203
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 38.1 bits (87), Expect = 0.011 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 8/95 (8%) Frame = +2 Query: 50 SQCRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------- 205 + C P D + T L V LP +L+ LFG G + + + Sbjct: 23 NNCSSP-VDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81 Query: 206 FAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 310 + FV + DP+DA++A L+G + V +A+ Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 116 Score = 34.3 bits (77), Expect = 0.16 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 10/80 (12%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEAR 253 + LYV LP ++LE LF +YGR+ + + F+ F +A+EA Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 Query: 254 YNLDGRDFDGSR--MIVEFA 307 L+G+ G+ + V+FA Sbjct: 184 KGLNGQKPPGATEPITVKFA 203
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 38.1 bits (87), Expect = 0.011 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 8/77 (10%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 259 R +VG L T R LE F +YG V R F FV F D + +A Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68 Query: 260 LDGRDFDGSRMIVEFAK 310 ++G+D DG + V A+ Sbjct: 69 MNGQDLDGRSITVNEAQ 85
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 38.1 bits (87), Expect = 0.011 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 8/75 (10%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYNL 262 ++VG +P L+D+F G V R + F E+ D A A NL Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 263 DGRDFDGSRMIVEFA 307 +GR+F G + V+ A Sbjct: 78 NGREFSGRALRVDNA 92
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 38.1 bits (87), Expect = 0.011 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 10/80 (12%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEAR 253 + LY+ LP +D+ED+F R+GR+ + + AF+ F +A+EA Sbjct: 105 DANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164 Query: 254 YNLDGRDFDGSR--MIVEFA 307 + +G GS + V+FA Sbjct: 165 TSFNGHKPPGSSEPITVKFA 184
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 38.1 bits (87), Expect = 0.011 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 8/81 (9%) Frame = +2 Query: 92 GGNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADE 247 G RLYVG L LE+LF G+V R F FV S ++ + Sbjct: 254 GSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQK 313 Query: 248 ARYNLDGRDFDGSRMIVEFAK 310 A +L+G D DG ++ V A+ Sbjct: 314 AINSLNGADLDGRQIRVSEAE 334 Score = 33.9 bits (76), Expect = 0.22 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 8/77 (10%) Frame = +2 Query: 77 ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDP 232 ER+ + + +L+VG L + L LF G V V++ ++ F FV S Sbjct: 91 ERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTA 150 Query: 233 RDADEARYNLDGRDFDG 283 + + A +G +F+G Sbjct: 151 AEVEAAAQQFNGYEFEG 167
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 38.1 bits (87), Expect = 0.011 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 8/95 (8%) Frame = +2 Query: 50 SQCRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------- 205 + C P D + T L V LP +L+ LFG G + + + Sbjct: 23 NNCSSP-VDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81 Query: 206 FAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 310 + FV + DP+DA++A L+G + V +A+ Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 116 Score = 34.3 bits (77), Expect = 0.16 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 10/80 (12%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEAR 253 + LYV LP ++LE LF +YGR+ + + F+ F +A+EA Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 Query: 254 YNLDGRDFDGSR--MIVEFA 307 L+G+ G+ + V+FA Sbjct: 184 KGLNGQKPPGATEPITVKFA 203
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 38.1 bits (87), Expect = 0.011 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 8/75 (10%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYNL 262 ++VG +P L+D+F G V R + F E+ D A A NL Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 263 DGRDFDGSRMIVEFA 307 +GR+F G + V+ A Sbjct: 78 NGREFSGRALRVDNA 92
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 37.7 bits (86), Expect = 0.015 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 8/81 (9%) Frame = +2 Query: 92 GGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADE 247 G R+YVG L LE LF G+V + ++ F FV + ++ Sbjct: 201 GSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQN 260 Query: 248 ARYNLDGRDFDGSRMIVEFAK 310 A +LDG D DG ++ V A+ Sbjct: 261 AIKSLDGADLDGRQIRVSEAE 281
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 37.7 bits (86), Expect = 0.015 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 8/75 (10%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYNL 262 ++VG +P L+D+F G V R + F E+ D A A NL Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 263 DGRDFDGSRMIVEFA 307 +GR+F G + V+ A Sbjct: 78 NGREFSGRALRVDNA 92
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 37.7 bits (86), Expect = 0.015 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 8/75 (10%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYNL 262 ++VG +P L+D+F G V R + F E+ D A A NL Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 263 DGRDFDGSRMIVEFA 307 +GR+F G + V+ A Sbjct: 78 NGREFSGRALRVDNA 92
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 37.7 bits (86), Expect = 0.015 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 8/75 (10%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYNL 262 ++VG +P L+D+F G V R + F E+ D A A NL Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 263 DGRDFDGSRMIVEFA 307 +GR+F G + V+ A Sbjct: 78 NGREFSGRALRVDNA 92
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 37.7 bits (86), Expect = 0.015 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 8/77 (10%) Frame = +2 Query: 77 ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDP 232 E+ R+ + +L+VG LP + L LF R G V V++ ++ F FV S Sbjct: 79 EQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTK 138 Query: 233 RDADEARYNLDGRDFDG 283 + + A +G + DG Sbjct: 139 EEVEAAEQQFNGYEIDG 155 Score = 33.9 bits (76), Expect = 0.22 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 8/79 (10%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEAR 253 + R+YVG L L++LF G V + ++ F FV +S ++ ++A Sbjct: 206 SNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAI 265 Query: 254 YNLDGRDFDGSRMIVEFAK 310 +L+G D DG + V A+ Sbjct: 266 DSLNGVDLDGRSIRVSAAE 284
>RNP1_CAEEL (Q10667) RNA-binding protein rnp-1| Length = 305 Score = 37.7 bits (86), Expect = 0.015 Identities = 30/118 (25%), Positives = 42/118 (35%), Gaps = 1/118 (0%) Frame = +2 Query: 101 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFD 280 ++L+VG LP + L+ +F + +V D+ +AFV + D D L G D Sbjct: 3 SKLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFVHIEED-DVDPIITRLTGYTID 61 Query: 281 GSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPXPG-SGRCFNCGIDGHWARDC 451 G +V K P PG RCF C D H C Sbjct: 62 GK--VVNIKK--------------------STSKLRPTPGMPNRCFRCQSDEHRTPQC 97
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 37.7 bits (86), Expect = 0.015 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 8/75 (10%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYNL 262 ++VG +P L+D+F G V R + F E+ D A A NL Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 263 DGRDFDGSRMIVEFA 307 +GR+F G + V+ A Sbjct: 78 NGREFSGRALRVDNA 92
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 37.7 bits (86), Expect = 0.015 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 8/77 (10%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 259 R +VG L T R LE F ++G + R F FV F D + +A Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68 Query: 260 LDGRDFDGSRMIVEFAK 310 ++G+D DG + V A+ Sbjct: 69 MNGQDLDGRSITVNEAQ 85
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 37.7 bits (86), Expect = 0.015 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 9/105 (8%) Frame = +2 Query: 23 AARVSSASLSQCRMPRYDERDRYGGN--TRLYVGRLPSRTRTRDLEDLFGRYGRV----- 181 + + S L R ++ + N T+L V LP +++ LF YG++ Sbjct: 676 SVKASHRGLDAAEERRREDMAKKAANQGTKLVVKNLPFEVTKKEVRTLFSAYGKLVALRI 735 Query: 182 --RHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 310 + FAF EFS ++A A +L G R++++FA+ Sbjct: 736 PKKFNQSSRGFAFAEFSTAKEALNAFNSLKDTHILGRRLVIDFAQ 780
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 37.7 bits (86), Expect = 0.015 Identities = 19/68 (27%), Positives = 34/68 (50%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDGS 286 L+V L + LE F +G++ V ++AFV F D A +A ++G++ +G Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGE 402 Query: 287 RMIVEFAK 310 + + AK Sbjct: 403 EIEIVLAK 410
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 37.7 bits (86), Expect = 0.015 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 8/77 (10%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 259 R +VG L T LE+ F YG + R F FV FS +A N Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIEN 68 Query: 260 LDGRDFDGSRMIVEFAK 310 ++G++ DG + V A+ Sbjct: 69 MNGKELDGRNITVNQAQ 85
>PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (EC 5.2.1.8)| (PPIase cyp6) (Rotamase cyp8) Length = 432 Score = 37.4 bits (85), Expect = 0.019 Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYNL 262 L+V +L T+ DLE +F R+G++ + ++AF+EF + ++A + + Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305 Query: 263 DGRDFDGSRMIVEFAK 310 D SR+ V+F++ Sbjct: 306 QNVLIDDSRIHVDFSQ 321
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 37.4 bits (85), Expect = 0.019 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 8/73 (10%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 262 L+V R+ T L F YG ++ + M + +AF+E+ RD A + Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164 Query: 263 DGRDFDGSRMIVE 301 DG+ DG R++V+ Sbjct: 165 DGKKIDGRRVLVD 177
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 37.4 bits (85), Expect = 0.019 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 8/106 (7%) Frame = +2 Query: 17 PPAARVSSASLSQCRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM 196 PP+ R ++ + P D N + V L TR DL++LF +G + + + Sbjct: 215 PPSLRDGASRRGESMQPNRRADD----NATIRVTNLSEDTRETDLQELFRPFGSISRIYL 270 Query: 197 KHE--------FAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 310 + FAF+ F DA A + G +D + VE+AK Sbjct: 271 AKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 316
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 37.4 bits (85), Expect = 0.019 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 8/106 (7%) Frame = +2 Query: 17 PPAARVSSASLSQCRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM 196 PP+ R ++ + P D N + V L TR DL++LF +G + + + Sbjct: 215 PPSLRDGASRRGESMQPNRRADD----NATIRVTNLSEDTRETDLQELFRPFGSISRIYL 270 Query: 197 KHE--------FAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 310 + FAF+ F DA A + G +D + VE+AK Sbjct: 271 AKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 316
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 37.4 bits (85), Expect = 0.019 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 8/78 (10%) Frame = +2 Query: 101 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARY 256 T L V LP + + LFG G + + + + FV +SDP DAD+A Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98 Query: 257 NLDGRDFDGSRMIVEFAK 310 L+G + V +A+ Sbjct: 99 TLNGLKLQTKTIKVSYAR 116 Score = 33.1 bits (74), Expect = 0.37 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 8/66 (12%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEAR 253 + LYV LP +++E LF +YGR+ + + F+ F +A+EA Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAI 183 Query: 254 YNLDGR 271 L+G+ Sbjct: 184 KGLNGQ 189
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 37.4 bits (85), Expect = 0.019 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 8/78 (10%) Frame = +2 Query: 101 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARY 256 T L V LP + + LFG G + + + + FV +SDP DAD+A Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98 Query: 257 NLDGRDFDGSRMIVEFAK 310 L+G + V +A+ Sbjct: 99 TLNGLKLQTKTIKVSYAR 116 Score = 32.7 bits (73), Expect = 0.48 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 8/66 (12%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEAR 253 + LYV LP +++E LF +YGR+ + + F+ F +A+EA Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183 Query: 254 YNLDGR 271 L+G+ Sbjct: 184 KGLNGQ 189
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 37.4 bits (85), Expect = 0.019 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 8/77 (10%) Frame = +2 Query: 77 ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDP 232 E+ R+ + +L+VG LP + L LF R G V V++ ++ F FV S Sbjct: 80 EQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTK 139 Query: 233 RDADEARYNLDGRDFDG 283 + + A +G + DG Sbjct: 140 EEVEAAEQQFNGYEIDG 156 Score = 33.9 bits (76), Expect = 0.22 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 8/79 (10%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEAR 253 + R+YVG L L++LF G V + ++ F FV +S ++ ++A Sbjct: 207 SNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAI 266 Query: 254 YNLDGRDFDGSRMIVEFAK 310 +L+G D DG + V A+ Sbjct: 267 DSLNGIDLDGRSIRVSAAE 285
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 37.4 bits (85), Expect = 0.019 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 8/76 (10%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 259 +L+VG L T + LED F +G + R F F+ F++P A A Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66 Query: 260 LDGRDFDGSRMIVEFA 307 ++G DG ++ V+ A Sbjct: 67 MNGESLDGRQIRVDHA 82
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 37.4 bits (85), Expect = 0.019 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 8/77 (10%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 259 R +VG L T LE F +G+V R F FV FS + +A N Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68 Query: 260 LDGRDFDGSRMIVEFAK 310 ++G++ DG + V A+ Sbjct: 69 MNGKELDGRNITVNQAQ 85
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 37.4 bits (85), Expect = 0.019 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 8/73 (10%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 262 L+V R+ T L F YG ++ + M + +AF+E+ RD A + Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164 Query: 263 DGRDFDGSRMIVE 301 DG+ DG R++V+ Sbjct: 165 DGKKIDGRRVLVD 177
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 37.0 bits (84), Expect = 0.025 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Frame = +2 Query: 101 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--FAFVEFSDPRDADEARYNLDGRD 274 +RL+VG LP ++ LF +YG+ V + + F F+ A+ A+ LD Sbjct: 74 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMP 133 Query: 275 FDGSRMIVEFA 307 G ++ V FA Sbjct: 134 LRGKQLRVRFA 144
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 37.0 bits (84), Expect = 0.025 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Frame = +2 Query: 101 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--FAFVEFSDPRDADEARYNLDGRD 274 +RL+VG LP ++ LF +YG+ V + + F F+ A+ A+ LD Sbjct: 74 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMP 133 Query: 275 FDGSRMIVEFA 307 G ++ V FA Sbjct: 134 LRGKQLRVRFA 144
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 37.0 bits (84), Expect = 0.025 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Frame = +2 Query: 101 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--FAFVEFSDPRDADEARYNLDGRD 274 +RL+VG LP ++ LF +YG+ V + + F F+ A+ A+ LD Sbjct: 76 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMP 135 Query: 275 FDGSRMIVEFA 307 G ++ V FA Sbjct: 136 LRGKQLRVRFA 146
>PTBP1_HUMAN (P26599) Polypyrimidine tract-binding protein 1 (PTB)| (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) (57 kDa RNA-binding protein PPTB-1) Length = 531 Score = 37.0 bits (84), Expect = 0.025 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 4/104 (3%) Frame = +2 Query: 11 LSPPAARVSSASLSQCRMPRYDERDRYGGNTRLYVGRL-PSRTRTRDLEDLFGRYGRVRH 187 L+ P+A ++A+ + +P GN+ L V L P R + L LFG YG V+ Sbjct: 311 LAIPSAAAAAAAAGRIAIPGLAG----AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQR 366 Query: 188 VDM---KHEFAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 310 V + K E A V+ +D A A +L+G G + + +K Sbjct: 367 VKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 410
>PM14_CAEEL (Q8ITY4) Pre-mRNA branch site p14-like protein| Length = 138 Score = 37.0 bits (84), Expect = 0.025 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 5/72 (6%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNL 262 N LY+ LP + T ++ ++FG++G VR + + + AFV + D DA A +L Sbjct: 18 NRILYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAKTACEHL 77 Query: 263 DGRDFDGSRMIV 298 G + ++V Sbjct: 78 SGYNVSNRYLVV 89
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 37.0 bits (84), Expect = 0.025 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Frame = +2 Query: 101 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--FAFVEFSDPRDADEARYNLDGRD 274 +RL+VG LP ++ LF +YG+ V + + F F+ A+ A+ LD Sbjct: 79 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMP 138 Query: 275 FDGSRMIVEFA 307 G ++ V FA Sbjct: 139 LRGKQLRVRFA 149
>PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 504 Score = 37.0 bits (84), Expect = 0.025 Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 8/76 (10%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 262 L+V +L T+ DLE +F R+G++ ++ + +AF+EF + A++A + + Sbjct: 248 LFVCKLNPVTQDEDLELIFSRFGKILSCEVVRDKKSGDSLQYAFIEFDEREAAEQAYFKM 307 Query: 263 DGRDFDGSRMIVEFAK 310 D R+ V+F++ Sbjct: 308 QNVLVDDRRIWVDFSQ 323
>PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like protein| Length = 124 Score = 37.0 bits (84), Expect = 0.025 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNL 262 N LYV LP + ++ D+FG+YG +R + + + AFV + D DA A +L Sbjct: 18 NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHL 77 Query: 263 DGRDFDGSRMIV 298 G + +IV Sbjct: 78 SGFNVANRYLIV 89
>PTBP1_BOVIN (Q8WN55) Polypyrimidine tract-binding protein 1 (PTB)| Length = 531 Score = 36.6 bits (83), Expect = 0.033 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 4/104 (3%) Frame = +2 Query: 11 LSPPAARVSSASLSQCRMPRYDERDRYGGNTRLYVGRL-PSRTRTRDLEDLFGRYGRVRH 187 L+ P+A ++A+ + +P GN+ L V L P R + L LFG YG V+ Sbjct: 311 LAIPSAAAAAAAAGRIAIPGLAG----AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQR 366 Query: 188 VDM---KHEFAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 310 V + K E A V+ +D A A +L+G G + + +K Sbjct: 367 VKVLFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSK 410
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 36.6 bits (83), Expect = 0.033 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 10/80 (12%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEAR 253 + LY+ LP +D+ED+F R+GR+ + + AF+ F +A+EA Sbjct: 105 DANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164 Query: 254 YNLDGRDFDGSR--MIVEFA 307 + G GS + V+FA Sbjct: 165 TSFIGHKPPGSSEPITVKFA 184
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 36.2 bits (82), Expect = 0.043 Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 8/99 (8%) Frame = +2 Query: 38 SASLSQCRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---- 205 S++ C P T L V LP + LFG G + + + Sbjct: 25 SSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG 84 Query: 206 ----FAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 310 + FV + DP+DA++A L+G + V +A+ Sbjct: 85 QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 123 Score = 34.7 bits (78), Expect = 0.13 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 10/80 (12%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEAR 253 + LYV LP ++LE LF +YGR+ + + F+ F +A+EA Sbjct: 131 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 190 Query: 254 YNLDGRDFDGSR--MIVEFA 307 L+G+ G+ + V+FA Sbjct: 191 KGLNGQKPSGATEPITVKFA 210
>RU2B_MOUSE (Q9CQI7) U2 small nuclear ribonucleoprotein B"| Length = 225 Score = 36.2 bits (82), Expect = 0.043 Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 4/103 (3%) Frame = +2 Query: 14 SPPAARVSSASLSQCRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYG---RVR 184 +P AA + ++P Y N L++ LP T L LF ++ VR Sbjct: 128 TPNAANTQGTAAPNPQVPDYPP------NYILFLNNLPEETNEMMLSMLFNQFPGFKEVR 181 Query: 185 HVDMKHEFAFVEFSDPRDADEARYNLDGRDFDGSR-MIVEFAK 310 V +H+ AFVEF + A AR L G S M + +AK Sbjct: 182 LVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAK 224
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 36.2 bits (82), Expect = 0.043 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 8/83 (9%) Frame = +2 Query: 74 DERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSD 229 +E + + RL+V L + DLE LF YG + + + FAFV F Sbjct: 391 EEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMF 450 Query: 230 PRDADEARYNLDGRDFDGSRMIV 298 P A +A +DG+ F G + V Sbjct: 451 PEHAVKAYAEVDGQVFQGRMLHV 473 Score = 32.3 bits (72), Expect = 0.63 Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 11/110 (10%) Frame = +2 Query: 14 SPPAARVSSASLSQCRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVD 193 S A S+ + + +E + L++ L T L+ +F + G ++ Sbjct: 693 SVEGAEASTGKMEEEEEEEEEEEEESIPGCTLFIKNLNFSTTEETLKGVFSKVGAIKSCT 752 Query: 194 MKHE-----------FAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 310 + + F FVE+ P A +A L G DG ++ V ++ Sbjct: 753 ISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISE 802 Score = 32.0 bits (71), Expect = 0.82 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 7/77 (9%) Frame = +2 Query: 101 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMK-------HEFAFVEFSDPRDADEARYN 259 +RL V LP+ + LF +G + +K +F F+ F +A A + Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAALNH 61 Query: 260 LDGRDFDGSRMIVEFAK 310 D +R+ VEF K Sbjct: 62 FHRSFIDTTRITVEFCK 78
>GRP2_NICSY (P27484) Glycine-rich protein 2| Length = 214 Score = 35.8 bits (81), Expect = 0.057 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = +2 Query: 398 GSGRCFNCGIDGHWARDCKAG 460 G G C+ CG DGH+AR+C +G Sbjct: 192 GGGGCYKCGEDGHFARECTSG 212 Score = 31.6 bits (70), Expect = 1.1 Identities = 13/18 (72%), Positives = 14/18 (77%) Frame = +2 Query: 398 GSGRCFNCGIDGHWARDC 451 GSG CF CG GH+ARDC Sbjct: 156 GSG-CFKCGESGHFARDC 172
>RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 35.8 bits (81), Expect = 0.057 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 11/90 (12%) Frame = +2 Query: 65 PRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----------FA 211 P D+ + L+V R+ T L F YG ++ + + + +A Sbjct: 91 PHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHIVYNKGSEGSGKPRGYA 150 Query: 212 FVEFSDPRDADEARYNLDGRDFDGSRMIVE 301 F+E+ RD A + DG+ DG R++V+ Sbjct: 151 FIEYEHERDMHSAYKHADGKKIDGRRVLVD 180
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 35.8 bits (81), Expect = 0.057 Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 8/99 (8%) Frame = +2 Query: 38 SASLSQCRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---- 205 S++ C P T L V LP + LFG G + + + Sbjct: 18 SSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG 77 Query: 206 ----FAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 310 + FV + DP+DA++A L+G + V +A+ Sbjct: 78 QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 116 Score = 34.7 bits (78), Expect = 0.13 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 10/80 (12%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEAR 253 + LYV LP ++LE LF +YGR+ + + F+ F +A+EA Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183 Query: 254 YNLDGRDFDGSR--MIVEFA 307 L+G+ G+ + V+FA Sbjct: 184 KGLNGQKPSGATEPITVKFA 203
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 35.8 bits (81), Expect = 0.057 Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 8/87 (9%) Frame = +2 Query: 74 DERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSD 229 + R + +++VG +P +L++ F R+G V V M ++ F F+ F D Sbjct: 105 EPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFED 164 Query: 230 PRDADEARYNLDGRDFDGSRMIVEFAK 310 + D+A N+ D G ++ V+ A+ Sbjct: 165 EQSVDQA-VNMHFHDIMGKKVEVKRAE 190 Score = 31.2 bits (69), Expect = 1.4 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 12/71 (16%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDAD----E 247 +L+VG L T L F +YG V + + F FV+F DP Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 248 ARYNLDGRDFD 280 + LDGR+ D Sbjct: 71 RPHTLDGRNID 81
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 35.8 bits (81), Expect = 0.057 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 7/73 (9%) Frame = +2 Query: 101 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEFSDPRDADEARYN 259 T +Y+ L+++FG+YG V + + F FV F DA +A Sbjct: 191 TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDE 250 Query: 260 LDGRDFDGSRMIV 298 ++G+D +G M V Sbjct: 251 MNGKDMNGKSMFV 263
>SNRPA_XENLA (P45429) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)| (U1A protein) (U1-A) Length = 282 Score = 35.8 bits (81), Expect = 0.057 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 4/75 (5%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYG---RVRHVDMKHEFAFVEFSDPRDADEARYNLDG 268 N L++ LP T L LF ++ VR V +H+ AFVEF + A AR +L G Sbjct: 207 NHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARESLQG 266 Query: 269 -RDFDGSRMIVEFAK 310 + + M + FAK Sbjct: 267 FKITQSNSMKISFAK 281
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 35.8 bits (81), Expect = 0.057 Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 8/99 (8%) Frame = +2 Query: 38 SASLSQCRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---- 205 S++ C P T L V LP + LFG G + + + Sbjct: 30 SSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG 89 Query: 206 ----FAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 310 + FV + DP+DA++A L+G + V +A+ Sbjct: 90 QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 128 Score = 34.7 bits (78), Expect = 0.13 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 10/80 (12%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEAR 253 + LYV LP ++LE LF +YGR+ + + F+ F +A+EA Sbjct: 136 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 195 Query: 254 YNLDGRDFDGSR--MIVEFA 307 L+G+ G+ + V+FA Sbjct: 196 KGLNGQKPSGATEPITVKFA 215
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 35.8 bits (81), Expect = 0.057 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 8/83 (9%) Frame = +2 Query: 74 DERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSD 229 +E + + +++VG LP + L +LF R G V V++ ++ F FV S Sbjct: 78 EEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSS 137 Query: 230 PRDADEARYNLDGRDFDGSRMIV 298 + + A +G + DG + V Sbjct: 138 KEEVEAACQQFNGYELDGRALRV 160 Score = 33.9 bits (76), Expect = 0.22 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 8/82 (9%) Frame = +2 Query: 89 YGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDAD 244 + + R+YVG L LE LF G+V + ++ F FV +S + + Sbjct: 184 FDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVN 243 Query: 245 EARYNLDGRDFDGSRMIVEFAK 310 A +LDG D +G + V A+ Sbjct: 244 NAIESLDGVDLNGRAIRVSPAE 265
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 35.8 bits (81), Expect = 0.057 Identities = 14/35 (40%), Positives = 24/35 (68%) Frame = +2 Query: 206 FAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 310 F FV+FS P DA A+ ++ + DG+++ ++FAK Sbjct: 593 FGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAK 627
>CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 35.8 bits (81), Expect = 0.057 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = +2 Query: 401 SGRCFNCGIDGHWARDCKAG 460 S CF CG GHWAR+C G Sbjct: 3 SNECFKCGRSGHWARECPTG 22 Score = 30.8 bits (68), Expect = 1.8 Identities = 11/18 (61%), Positives = 12/18 (66%) Frame = +2 Query: 410 CFNCGIDGHWARDCKAGD 463 C+NCG GH ARDC D Sbjct: 98 CYNCGKPGHLARDCDHAD 115 Score = 30.0 bits (66), Expect = 3.1 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = +2 Query: 410 CFNCGIDGHWARDCK 454 C+NCG GH A+DCK Sbjct: 74 CYNCGRGGHIAKDCK 88
>CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 35.8 bits (81), Expect = 0.057 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = +2 Query: 401 SGRCFNCGIDGHWARDCKAG 460 S CF CG GHWAR+C G Sbjct: 3 SNECFKCGRSGHWARECPTG 22 Score = 30.8 bits (68), Expect = 1.8 Identities = 11/18 (61%), Positives = 12/18 (66%) Frame = +2 Query: 410 CFNCGIDGHWARDCKAGD 463 C+NCG GH ARDC D Sbjct: 98 CYNCGKPGHLARDCDHAD 115 Score = 30.0 bits (66), Expect = 3.1 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = +2 Query: 410 CFNCGIDGHWARDCK 454 C+NCG GH A+DCK Sbjct: 74 CYNCGRGGHIAKDCK 88
>CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 35.8 bits (81), Expect = 0.057 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = +2 Query: 401 SGRCFNCGIDGHWARDCKAG 460 S CF CG GHWAR+C G Sbjct: 3 SNECFKCGRSGHWARECPTG 22 Score = 30.8 bits (68), Expect = 1.8 Identities = 11/18 (61%), Positives = 12/18 (66%) Frame = +2 Query: 410 CFNCGIDGHWARDCKAGD 463 C+NCG GH ARDC D Sbjct: 98 CYNCGKPGHLARDCDHAD 115 Score = 30.0 bits (66), Expect = 3.1 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = +2 Query: 410 CFNCGIDGHWARDCK 454 C+NCG GH A+DCK Sbjct: 74 CYNCGRGGHIAKDCK 88
>CNBP_MOUSE (P53996) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 178 Score = 35.8 bits (81), Expect = 0.057 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = +2 Query: 401 SGRCFNCGIDGHWARDCKAG 460 S CF CG GHWAR+C G Sbjct: 3 SNECFKCGRSGHWARECPTG 22 Score = 30.8 bits (68), Expect = 1.8 Identities = 11/18 (61%), Positives = 12/18 (66%) Frame = +2 Query: 410 CFNCGIDGHWARDCKAGD 463 C+NCG GH ARDC D Sbjct: 99 CYNCGKPGHLARDCDHAD 116 Score = 30.0 bits (66), Expect = 3.1 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = +2 Query: 410 CFNCGIDGHWARDCK 454 C+NCG GH A+DCK Sbjct: 75 CYNCGRGGHIAKDCK 89
>SNRPA_MOUSE (Q62189) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)| (U1A protein) (U1-A) Length = 286 Score = 35.4 bits (80), Expect = 0.074 Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 4/102 (3%) Frame = +2 Query: 17 PPAARVSSASLSQCRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYG---RVRH 187 PP A + L +MP N L++ LP T L LF ++ VR Sbjct: 185 PPGA-MPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRL 243 Query: 188 VDMKHEFAFVEFSDPRDADEARYNLDG-RDFDGSRMIVEFAK 310 V +H+ AFVEF + A AR L G + + M + FAK Sbjct: 244 VPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 285
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 35.4 bits (80), Expect = 0.074 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 8/76 (10%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 262 L+VGRLP R+ LE+LF + G V+ + E F +V FS D A + Sbjct: 5 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Query: 263 DGRDFDGSRMIVEFAK 310 F+G ++ V AK Sbjct: 65 --TTFEGCKINVTVAK 78 Score = 30.4 bits (67), Expect = 2.4 Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 7/75 (9%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEFSDPRDADEARYNL 262 RL + L + DL+ +F ++G V V++ + F FV+F + +A +A + Sbjct: 114 RLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGM 173 Query: 263 DGRDFDGSRMIVEFA 307 + ++ G + V++A Sbjct: 174 NMKEIKGRTVAVDWA 188
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 35.4 bits (80), Expect = 0.074 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 8/87 (9%) Frame = +2 Query: 74 DERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSD 229 +E+ R +V L S TR DL++LF RYG+V + + FV S Sbjct: 419 EEKGRSSCGRNFWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMST 478 Query: 230 PRDADEARYNLDGRDFDGSRMIVEFAK 310 +A + +L + G + VE AK Sbjct: 479 AEEATKCINHLHKTELHGKMISVEKAK 505
>RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) Length = 448 Score = 35.4 bits (80), Expect = 0.074 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 8/73 (10%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 262 L++ R+ T L F YG ++ + + H+ +AF+E+ RD A + Sbjct: 104 LFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHA 163 Query: 263 DGRDFDGSRMIVE 301 DG+ D R++V+ Sbjct: 164 DGKKIDSKRVLVD 176
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 35.4 bits (80), Expect = 0.074 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 2/91 (2%) Frame = +2 Query: 41 ASLSQCRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHV--DMKHEFAF 214 A+LS R P Y RL+VG LP+ + + LF +YG V + F F Sbjct: 280 ANLSLLRRPG---EKTYTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGF 336 Query: 215 VEFSDPRDADEARYNLDGRDFDGSRMIVEFA 307 ++ A+ A+ LD G ++ V FA Sbjct: 337 IKLESRALAEIAKAELDDTPMRGRQLRVRFA 367
>GAG_HV1B5 (P04593) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 35.4 bits (80), Expect = 0.074 Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 4/25 (16%) Frame = +2 Query: 407 RCFNCGIDGHWARDCKA----GDWK 469 +CFNCG +GH AR+CKA G WK Sbjct: 390 KCFNCGKEGHIARNCKAPRKKGCWK 414
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 35.4 bits (80), Expect = 0.074 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 8/95 (8%) Frame = +2 Query: 50 SQCRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------- 205 + C P D + T L LP +L+ LFG G + + + Sbjct: 23 NNCSSP-VDSGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81 Query: 206 FAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 310 + FV + DP+DA++A L+G + V +A+ Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 116 Score = 34.3 bits (77), Expect = 0.16 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 10/80 (12%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEAR 253 + LYV LP ++LE LF +YGR+ + + F+ F +A+EA Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 Query: 254 YNLDGRDFDGSR--MIVEFA 307 L+G+ G+ + V+FA Sbjct: 184 KGLNGQKPPGATEPITVKFA 203
>RU2B_HUMAN (P08579) U2 small nuclear ribonucleoprotein B"| Length = 225 Score = 35.4 bits (80), Expect = 0.074 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 4/78 (5%) Frame = +2 Query: 89 YGGNTRLYVGRLPSRTRTRDLEDLFGRYG---RVRHVDMKHEFAFVEFSDPRDADEARYN 259 Y N L++ LP T L LF ++ VR V +H+ AFVEF + A AR Sbjct: 147 YPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDA 206 Query: 260 LDGRDFDGSR-MIVEFAK 310 L G S M + +AK Sbjct: 207 LQGFKITPSHAMKITYAK 224
>GAG_HV1C4 (P05887) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 35.4 bits (80), Expect = 0.074 Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 4/25 (16%) Frame = +2 Query: 407 RCFNCGIDGHWARDCKA----GDWK 469 +CFNCG +GH AR+CKA G WK Sbjct: 390 KCFNCGKEGHIARNCKAPRKKGCWK 414
>ZCHC2_MOUSE (Q69ZB8) Zinc finger CCHC domain-containing protein 2 (Fragment)| Length = 1168 Score = 35.4 bits (80), Expect = 0.074 Identities = 11/19 (57%), Positives = 16/19 (84%) Frame = +2 Query: 398 GSGRCFNCGIDGHWARDCK 454 G+ C+NCG+ GH+A+DCK Sbjct: 1119 GNVSCYNCGVSGHYAQDCK 1137
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 35.4 bits (80), Expect = 0.074 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 2/91 (2%) Frame = +2 Query: 41 ASLSQCRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHV--DMKHEFAF 214 A+LS R P Y RL+VG LP+ + + LF +YG V + F F Sbjct: 272 ANLSLLRRPG---EKTYTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGF 328 Query: 215 VEFSDPRDADEARYNLDGRDFDGSRMIVEFA 307 ++ A+ A+ LD G ++ V FA Sbjct: 329 IKLESRALAEIAKAELDDTPMRGRQLRVRFA 359
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 35.4 bits (80), Expect = 0.074 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 8/75 (10%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEAR 253 +T+L++G L T L D F +G V R F FV F+D A A Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93 Query: 254 YNLDGRDFDGSRMIV 298 +DG++ +G + V Sbjct: 94 SEMDGKELNGRHIRV 108
>CNBP_CHICK (O42395) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 172 Score = 35.4 bits (80), Expect = 0.074 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = +2 Query: 401 SGRCFNCGIDGHWARDCKAG 460 S CF CG GHWAR+C G Sbjct: 3 SNECFKCGRTGHWARECPTG 22 Score = 30.8 bits (68), Expect = 1.8 Identities = 11/18 (61%), Positives = 12/18 (66%) Frame = +2 Query: 410 CFNCGIDGHWARDCKAGD 463 C+NCG GH ARDC D Sbjct: 93 CYNCGKPGHLARDCDHAD 110 Score = 30.0 bits (66), Expect = 3.1 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = +2 Query: 410 CFNCGIDGHWARDCK 454 C+NCG GH A+DCK Sbjct: 69 CYNCGRGGHIAKDCK 83
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 35.4 bits (80), Expect = 0.074 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 8/77 (10%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 259 R +VG L T +LE F ++G V R F FV F D + +A Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDE 66 Query: 260 LDGRDFDGSRMIVEFAK 310 ++G++ DG + V A+ Sbjct: 67 MNGKELDGRTITVNEAQ 83
>SNRPA_HUMAN (P09012) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)| (U1A protein) (U1-A) Length = 281 Score = 35.4 bits (80), Expect = 0.074 Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 4/102 (3%) Frame = +2 Query: 17 PPAARVSSASLSQCRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYG---RVRH 187 PP A + L +MP N L++ LP T L LF ++ VR Sbjct: 180 PPGA-MPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRL 238 Query: 188 VDMKHEFAFVEFSDPRDADEARYNLDG-RDFDGSRMIVEFAK 310 V +H+ AFVEF + A AR L G + + M + FAK Sbjct: 239 VPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 280
>POL_HV1C4 (P05960) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR)] (Fragment) Length = 549 Score = 35.4 bits (80), Expect = 0.074 Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 4/25 (16%) Frame = +2 Query: 407 RCFNCGIDGHWARDCKA----GDWK 469 +CFNCG +GH AR+CKA G WK Sbjct: 390 KCFNCGKEGHIARNCKAPRKKGCWK 414
>POL_HV1B5 (P04587) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 35.4 bits (80), Expect = 0.074 Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 4/25 (16%) Frame = +2 Query: 407 RCFNCGIDGHWARDCKA----GDWK 469 +CFNCG +GH AR+CKA G WK Sbjct: 390 KCFNCGKEGHIARNCKAPRKKGCWK 414
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 35.4 bits (80), Expect = 0.074 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 8/77 (10%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 259 R +VG L T LE F ++G + R F FV F D + +A Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEG 66 Query: 260 LDGRDFDGSRMIVEFAK 310 ++G++ DG + V A+ Sbjct: 67 MNGQELDGRNITVNEAQ 83
>ZCHC2_HUMAN (Q9C0B9) Zinc finger CCHC domain-containing protein 2 (Fragment)| Length = 899 Score = 35.4 bits (80), Expect = 0.074 Identities = 11/19 (57%), Positives = 16/19 (84%) Frame = +2 Query: 398 GSGRCFNCGIDGHWARDCK 454 G+ C+NCG+ GH+A+DCK Sbjct: 850 GNVSCYNCGVSGHYAQDCK 868
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 35.0 bits (79), Expect = 0.097 Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 21/119 (17%) Frame = +2 Query: 5 LVLSPPAARVSSASLSQCRMPRYD-------------ERDRYGGNTRLYVGRLPSRTRTR 145 L LS P++ SS + + +P +D E + + +++VG L + Sbjct: 42 LSLSSPSSCFSSRFVRKVTLPDFDQIEDVEDGDEGVEEERNFSPDLKIFVGNLLFSADSA 101 Query: 146 DLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNLDGRDFDGSRMIV 298 L +LF R G V V++ ++ F FV S + + A +G + DG + V Sbjct: 102 ALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRV 160 Score = 33.9 bits (76), Expect = 0.22 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 8/82 (9%) Frame = +2 Query: 89 YGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDAD 244 + + R+YVG L LE LF G+V + ++ F FV +S + + Sbjct: 190 FDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVN 249 Query: 245 EARYNLDGRDFDGSRMIVEFAK 310 A +LDG D +G + V A+ Sbjct: 250 NAIESLDGVDLNGRAIRVSPAE 271
>PM14_DROME (Q9VRV7) Pre-mRNA branch site p14-like protein| Length = 121 Score = 35.0 bits (79), Expect = 0.097 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNL 262 N LYV LP + + ++ D+FG++G +R + + + AFV + D DA A +L Sbjct: 14 NRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 73 Query: 263 DG 268 G Sbjct: 74 SG 75
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 35.0 bits (79), Expect = 0.097 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 8/56 (14%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADE 247 +L+VG L T ++L D FG+YG + +++K + FAF+ F++ D+ Sbjct: 57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDK 112
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 35.0 bits (79), Expect = 0.097 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 8/73 (10%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 262 L+V RL + ++ F YG ++ V + + +AF+E+ RD A Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199 Query: 263 DGRDFDGSRMIVE 301 DG+ DG R++V+ Sbjct: 200 DGQKIDGRRVLVD 212
>PM14_MOUSE (P59708) Pre-mRNA branch site protein p14 (SF3B 14 kDa subunit)| Length = 125 Score = 34.7 bits (78), Expect = 0.13 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNL 262 N LY+ LP + ++ D+FG+YG +R + + + A+V + D DA A +L Sbjct: 18 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHL 77 Query: 263 DG 268 G Sbjct: 78 SG 79
>PM14_HUMAN (Q9Y3B4) Pre-mRNA branch site protein p14 (SF3B 14 kDa subunit)| Length = 125 Score = 34.7 bits (78), Expect = 0.13 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNL 262 N LY+ LP + ++ D+FG+YG +R + + + A+V + D DA A +L Sbjct: 18 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHL 77 Query: 263 DG 268 G Sbjct: 78 SG 79
>POL_HV1H2 (P04585) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1434 Score = 34.7 bits (78), Expect = 0.13 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 4/25 (16%) Frame = +2 Query: 407 RCFNCGIDGHWARDCKA----GDWK 469 +CFNCG +GH AR+C+A G WK Sbjct: 390 KCFNCGKEGHTARNCRAPRKKGCWK 414
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 34.7 bits (78), Expect = 0.13 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 11/105 (10%) Frame = +2 Query: 14 SPPAARVSSASLSQCRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVD 193 SPP +V+ + + E + ++++G L T +L + FG+YG V + Sbjct: 136 SPPQQQVTQTKEERSKADLSKE------SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLK 189 Query: 194 MKHE--------FAFVEFSDPRDADE---ARYNLDGRDFDGSRMI 295 + + F F+ F P DE ++ LDG+ D R I Sbjct: 190 IMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAI 234
>GAG_SIVCZ (P17282) Gag polyprotein [Contains: Core protein p18; Core protein| p25; Core protein p16] Length = 508 Score = 34.7 bits (78), Expect = 0.13 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 4/25 (16%) Frame = +2 Query: 407 RCFNCGIDGHWARDCKA----GDWK 469 +CFNCG +GH AR+CKA G W+ Sbjct: 401 KCFNCGKEGHLARNCKAPRRKGCWR 425
>GAG_HV1PV (P03350) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 34.7 bits (78), Expect = 0.13 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 4/25 (16%) Frame = +2 Query: 407 RCFNCGIDGHWARDCKA----GDWK 469 +CFNCG +GH AR+C+A G WK Sbjct: 390 KCFNCGKEGHTARNCRAPRKKGCWK 414
>GAG_HV1B1 (P03347) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 34.7 bits (78), Expect = 0.13 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 4/25 (16%) Frame = +2 Query: 407 RCFNCGIDGHWARDCKA----GDWK 469 +CFNCG +GH AR+C+A G WK Sbjct: 390 KCFNCGKEGHTARNCRAPRKKGCWK 414
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 34.7 bits (78), Expect = 0.13 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 8/76 (10%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 262 L+VGRLP R+ LE+LF + G V+ + E F +V FS D A + Sbjct: 5 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Query: 263 DGRDFDGSRMIVEFAK 310 F+G ++ V AK Sbjct: 65 --TTFEGCKIDVTVAK 78 Score = 30.8 bits (68), Expect = 1.8 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 7/88 (7%) Frame = +2 Query: 65 PRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEF 223 P++ + RL + L + DL+ +F YG V V++ + FAFV+F Sbjct: 101 PKHKKAKVADKKARLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQF 160 Query: 224 SDPRDADEARYNLDGRDFDGSRMIVEFA 307 + +A +A + ++ G + V++A Sbjct: 161 KNLLEAGKALKGANMKEIKGRTVAVDWA 188
>POL_HV1J3 (P12498) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR)] (Fragment) Length = 531 Score = 34.7 bits (78), Expect = 0.13 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 4/25 (16%) Frame = +2 Query: 407 RCFNCGIDGHWARDCKA----GDWK 469 +CFNCG +GH AR+C+A G WK Sbjct: 390 KCFNCGKEGHLARNCRAPRKKGCWK 414
>GAG_HV1J3 (P12494) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 34.7 bits (78), Expect = 0.13 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 4/25 (16%) Frame = +2 Query: 407 RCFNCGIDGHWARDCKA----GDWK 469 +CFNCG +GH AR+C+A G WK Sbjct: 390 KCFNCGKEGHLARNCRAPRKKGCWK 414
>GAG_HV1H2 (P04591) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 34.7 bits (78), Expect = 0.13 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 4/25 (16%) Frame = +2 Query: 407 RCFNCGIDGHWARDCKA----GDWK 469 +CFNCG +GH AR+C+A G WK Sbjct: 390 KCFNCGKEGHTARNCRAPRKKGCWK 414
>POL_HV1MA (P04588) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1439 Score = 34.7 bits (78), Expect = 0.13 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 4/25 (16%) Frame = +2 Query: 407 RCFNCGIDGHWARDCKA----GDWK 469 +CFNCG +GH AR+C+A G WK Sbjct: 396 KCFNCGKEGHLARNCRAPRKKGCWK 420
>EWS_MOUSE (Q61545) RNA-binding protein EWS| Length = 655 Score = 34.7 bits (78), Expect = 0.13 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 16/92 (17%) Frame = +2 Query: 83 DRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVR----------HVDMKHEF------AF 214 D N+ +YV L DL D F + G V+ H+ + E A Sbjct: 354 DEDSDNSAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDAT 413 Query: 215 VEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 310 V + DP A A DG+DF GS++ V A+ Sbjct: 414 VSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 445
>POL_HV1PV (P03368) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 34.7 bits (78), Expect = 0.13 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 4/25 (16%) Frame = +2 Query: 407 RCFNCGIDGHWARDCKA----GDWK 469 +CFNCG +GH AR+C+A G WK Sbjct: 390 KCFNCGKEGHTARNCRAPRKKGCWK 414
>POL_HV1B1 (P03366) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 34.7 bits (78), Expect = 0.13 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 4/25 (16%) Frame = +2 Query: 407 RCFNCGIDGHWARDCKA----GDWK 469 +CFNCG +GH AR+C+A G WK Sbjct: 390 KCFNCGKEGHTARNCRAPRKKGCWK 414
>GAG_HV1MA (P04594) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 504 Score = 34.7 bits (78), Expect = 0.13 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 4/25 (16%) Frame = +2 Query: 407 RCFNCGIDGHWARDCKA----GDWK 469 +CFNCG +GH AR+C+A G WK Sbjct: 396 KCFNCGKEGHLARNCRAPRKKGCWK 420
>GAG_HV1JR (P20873) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 503 Score = 34.3 bits (77), Expect = 0.16 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 4/25 (16%) Frame = +2 Query: 407 RCFNCGIDGHWARDCKA----GDWK 469 +CFNCG +GH AR+C+A G WK Sbjct: 390 KCFNCGKEGHIARNCRAPRKKGCWK 414
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 34.3 bits (77), Expect = 0.16 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 8/68 (11%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYN 259 RL++ L + D LF +YG + V + FA V+F DP +A A Sbjct: 302 RLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAYEA 361 Query: 260 LDGRDFDG 283 DG+ F G Sbjct: 362 QDGKIFQG 369 Score = 30.0 bits (66), Expect = 3.1 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 13/78 (16%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGR--VRHVDMKHE-----------FAFVEFSDPRD 238 +T ++V L +T +R L D F V V MK + F FVEFS Sbjct: 604 STSVFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFSSKEA 663 Query: 239 ADEARYNLDGRDFDGSRM 292 A+ A+ +DG DG ++ Sbjct: 664 AEIAQKAMDGHVLDGHKL 681
>GAG_HV1BR (P03348) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 34.3 bits (77), Expect = 0.16 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 4/25 (16%) Frame = +2 Query: 407 RCFNCGIDGHWARDCKA----GDWK 469 +CFNCG +GH AR+C+A G WK Sbjct: 390 KCFNCGKEGHIARNCRAPRKKGCWK 414
>GAG_HV1LW (Q70622) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 34.3 bits (77), Expect = 0.16 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 4/25 (16%) Frame = +2 Query: 407 RCFNCGIDGHWARDCKA----GDWK 469 +CFNCG +GH AR+C+A G WK Sbjct: 390 KCFNCGKEGHIARNCRAPRKKGCWK 414
>EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma| breakpoint region 1 protein) Length = 656 Score = 34.3 bits (77), Expect = 0.16 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 16/92 (17%) Frame = +2 Query: 83 DRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVR----------HVDMKHEF------AF 214 D N+ +YV L DL D F + G V+ H+ + E A Sbjct: 355 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDAT 414 Query: 215 VEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 310 V + DP A A DG+DF GS++ V A+ Sbjct: 415 VSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 446
>POL_HV1BR (P03367) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 34.3 bits (77), Expect = 0.16 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 4/25 (16%) Frame = +2 Query: 407 RCFNCGIDGHWARDCKA----GDWK 469 +CFNCG +GH AR+C+A G WK Sbjct: 390 KCFNCGKEGHIARNCRAPRKKGCWK 414
>POL_HV1JR (P20875) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1438 Score = 34.3 bits (77), Expect = 0.16 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 4/25 (16%) Frame = +2 Query: 407 RCFNCGIDGHWARDCKA----GDWK 469 +CFNCG +GH AR+C+A G WK Sbjct: 390 KCFNCGKEGHIARNCRAPRKKGCWK 414
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 33.9 bits (76), Expect = 0.22 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHV----DMKHE---FAFVEFSDPRDADEARY 256 N+ LYVG L L DLF + V ++ D+ H +A+V F++P DA A Sbjct: 44 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAME 103 Query: 257 NLD 265 +L+ Sbjct: 104 SLN 106 Score = 30.8 bits (68), Expect = 1.8 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 7/63 (11%) Frame = +2 Query: 101 TRLYVGRLPSRTRTRDLEDLFGRYGRVRH-VDMKHE------FAFVEFSDPRDADEARYN 259 T +YV LP +L+ FG+YG + V MK + F FV F P A A Sbjct: 225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEK 284 Query: 260 LDG 268 ++G Sbjct: 285 MNG 287 Score = 28.9 bits (63), Expect = 6.9 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 7/77 (9%) Frame = +2 Query: 101 TRLYVGRLPSRTRTRDLEDLFGRYGRV-------RHVDMKHEFAFVEFSDPRDADEARYN 259 + LY+ L L+++F YG V + F FV +S+P +A A Sbjct: 328 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKE 387 Query: 260 LDGRDFDGSRMIVEFAK 310 ++G+ + V A+ Sbjct: 388 MNGKMIGRKPLYVALAQ 404
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 33.9 bits (76), Expect = 0.22 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 8/77 (10%) Frame = +2 Query: 104 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 259 R +VG L T DL+ F ++G V R F FV F D + +A Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66 Query: 260 LDGRDFDGSRMIVEFAK 310 ++G++ DG + V A+ Sbjct: 67 MNGKELDGRVITVNEAQ 83
>GAG_HV1U4 (P24736) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 492 Score = 33.5 bits (75), Expect = 0.28 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 4/25 (16%) Frame = +2 Query: 407 RCFNCGIDGHWARDCKA----GDWK 469 +CFNCG +GH A++C+A G WK Sbjct: 384 KCFNCGKEGHLAKNCRAPRKKGCWK 408
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 33.5 bits (75), Expect = 0.28 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 8/59 (13%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEA 250 +T LYV LP +LE +FG+YG + ++ + AFV F+ +A EA Sbjct: 170 DTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEA 228 Score = 30.4 bits (67), Expect = 2.4 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 9/85 (10%) Frame = +2 Query: 83 DRYGGN-TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF--------AFVEFSDPR 235 D G N T L V LP R+L LF G + + ++ AFV+F+ Sbjct: 78 DNQGCNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEI 137 Query: 236 DADEARYNLDGRDFDGSRMIVEFAK 310 DA A +L+G R+ V +A+ Sbjct: 138 DAQNAIKSLNGVTVRNKRLKVSYAR 162
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 33.5 bits (75), Expect = 0.28 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 8/59 (13%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEA 250 +T LYV LP +LE +FG+YG + ++ + AFV F+ +A EA Sbjct: 187 DTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEA 245
>POL_HV1ND (P18802) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1431 Score = 33.5 bits (75), Expect = 0.28 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 4/25 (16%) Frame = +2 Query: 407 RCFNCGIDGHWARDCKA----GDWK 469 +CFNCG +GH A++C+A G WK Sbjct: 388 KCFNCGKEGHTAKNCRAPRKKGCWK 412
>GAG_HV2KR (Q74119) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 33.5 bits (75), Expect = 0.28 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 4/25 (16%) Frame = +2 Query: 407 RCFNCGIDGHWARDCKA----GDWK 469 +C+NCG DGH AR C+A G WK Sbjct: 389 KCWNCGKDGHSARQCRAPRRQGCWK 413
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 33.5 bits (75), Expect = 0.28 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 4/72 (5%) Frame = +2 Query: 107 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE----FAFVEFSDPRDADEARYNLDGRD 274 L++G L +L F +G + +D+K + +AF ++SD +A +DG Sbjct: 658 LFIGNLEKDITAGELRSHFEAFGEIIEIDIKKQGLNAYAFCQYSDIVSVVKAMRKMDGEH 717 Query: 275 FDGSRMIVEFAK 310 +R+ + F K Sbjct: 718 LGSNRIKLGFGK 729
>GAG_HV1ND (P18800) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 496 Score = 33.5 bits (75), Expect = 0.28 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 4/25 (16%) Frame = +2 Query: 407 RCFNCGIDGHWARDCKA----GDWK 469 +CFNCG +GH A++C+A G WK Sbjct: 388 KCFNCGKEGHTAKNCRAPRKKGCWK 412
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 33.5 bits (75), Expect = 0.28 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 11/104 (10%) Frame = +2 Query: 32 VSSASLSQCRMPRYDERDRYGGN---TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKH 202 V++AS + RD +GG T L V LP R+L LF G + + Sbjct: 84 VNAASTNSLNCGGGGGRDGHGGGSNGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMR 143 Query: 203 EF--------AFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 310 ++ AFV+F+ D+ A +L+G R+ V +A+ Sbjct: 144 DYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRLKVSYAR 187 Score = 31.2 bits (69), Expect = 1.4 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 8/59 (13%) Frame = +2 Query: 98 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEA 250 +T LYV LP L+ +FG+YG + ++ + AFV F+ +A EA Sbjct: 195 DTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEA 253
>POL_HV2KR (Q74120) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1462 Score = 33.5 bits (75), Expect = 0.28 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 4/25 (16%) Frame = +2 Query: 407 RCFNCGIDGHWARDCKA----GDWK 469 +C+NCG DGH AR C+A G WK Sbjct: 389 KCWNCGKDGHSARQCRAPRRQGCWK 413 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,657,912 Number of Sequences: 219361 Number of extensions: 1027523 Number of successful extensions: 3962 Number of sequences better than 10.0: 420 Number of HSP's better than 10.0 without gapping: 3464 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3852 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
