ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet51h04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein 40 0.002
2HPSE_SOYBN (P24337) Hydrophobic seed protein (HPS) (Allergen Gly... 39 0.004
314KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor 38 0.005
4CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor ... 37 0.011
5XYNB_PSEFL (P23030) Endo-1,4-beta-xylanase B precursor (EC 3.2.1... 28 4.0
6GIGAN_ORYSA (Q9AWL7) GIGANTEA protein 28 5.3
7SYI_GLUOX (Q5FRI6) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 28 6.9

>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein|
          Length = 346

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 15/19 (78%), Positives = 17/19 (89%)
 Frame = +2

Query: 338 CCSLLGGLADLEAAVCLCT 394
           CC LLGGL DL+AA+CLCT
Sbjct: 291 CCPLLGGLVDLDAAICLCT 309



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>HPSE_SOYBN (P24337) Hydrophobic seed protein (HPS) (Allergen Gly m 1)|
          Length = 80

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = +2

Query: 332 DKCCSLLGGLADLEAAVCLC 391
           D CC+L+GGL D+EA VCLC
Sbjct: 26  DDCCALIGGLGDIEAIVCLC 45



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>14KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor|
          Length = 137

 Score = 38.1 bits (87), Expect = 0.005
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = +2

Query: 338 CCSLLGGLADLEAAVCLCT 394
           CCSLL GL +LEAAVCLCT
Sbjct: 84  CCSLLEGLVNLEAAVCLCT 102



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>CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor (Root-specific|
           protein ZRP3)
          Length = 129

 Score = 37.0 bits (84), Expect = 0.011
 Identities = 14/21 (66%), Positives = 18/21 (85%)
 Frame = +2

Query: 332 DKCCSLLGGLADLEAAVCLCT 394
           ++CC LL GL DL+AA+CLCT
Sbjct: 73  EQCCPLLEGLVDLDAALCLCT 93



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>XYNB_PSEFL (P23030) Endo-1,4-beta-xylanase B precursor (EC 3.2.1.8) (Xylanase|
           B) (1,4-beta-D-xylan xylanohydrolase B)
          Length = 592

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 26  TTSASQLKQPGAMASRTFSAACLLALLVANTFLAGDAC 139
           T SAS  + PG    RT +  C+   L A  F A  AC
Sbjct: 2   TISASDYRHPGNFLKRTTALLCVGTALTALAFNASAAC 39



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>GIGAN_ORYSA (Q9AWL7) GIGANTEA protein|
          Length = 1160

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 150 WQLLQASPARNVLATSSASRQAAEKVLDAI 61
           WQ L ASP   + A S+++ Q   KV+DA+
Sbjct: 908 WQKLIASPEMQMSAESTSAHQGWRKVVDAL 937



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>SYI_GLUOX (Q5FRI6) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 960

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 111 ATSSASRQAAEKVLDAIAPGCLSWLALVVV 22
           A S  +R+AA  VLDA+     +WLA V+V
Sbjct: 783 APSDPTRRAARTVLDALHRALCTWLAPVLV 812


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,833,911
Number of Sequences: 219361
Number of extensions: 227195
Number of successful extensions: 865
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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