ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet51g04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY857762.1| Triticum monococcum peroxidase 8 (POX8) mRNA, com... 258 7e-66
2ref|NM_183815.1| Oryza sativa (japonica cultivar-group), predic... 70 3e-09
3emb|AJ401274.1|ZMA401274 Zea mays mRNA for peroxidase (pox1 gene) 70 3e-09
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 70 3e-09
5dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic D... 70 3e-09
6dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic D... 70 3e-09
7dbj|AK121616.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 3e-09
8tpe|BN000543.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 70 3e-09
9ref|NM_183810.1| Oryza sativa (japonica cultivar-group), predic... 64 2e-07
10dbj|AK068894.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 2e-07
11tpe|BN000541.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 64 2e-07
12ref|NM_183816.1| Oryza sativa (japonica cultivar-group), predic... 62 8e-07
13dbj|AK099187.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 8e-07
14dbj|AK070715.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 8e-07
15tpe|BN000544.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 62 8e-07
16dbj|AK060115.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.012
17gb|AY816748.1| Synthetic construct clone pcNiV-Fopt C-terminal-A... 40 2.9
18gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 2.9
19dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 2.9
20gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 2.9 
>gb|AY857762.1| Triticum monococcum peroxidase 8 (POX8) mRNA, complete cds
          Length = 1282

 Score =  258 bits (130), Expect = 7e-66
 Identities = 146/152 (96%)
 Strand = Plus / Plus

                                                                       
Query: 75  ccatggcgagcagcggcagcctggccggtctggcggtgctgctcaccgncgtgctgngcc 134
           ||||||||||||||||| | |||||||||||||||||||||||||||| ||||||| |||
Sbjct: 63  ccatggcgagcagcggcgggctggccggtctggcggtgctgctcaccgccgtgctgtgcc 122

                                                                       
Query: 135 tgcagctgccggtccacagccgcgcccagctgcgcgtcgggttctacaacaccacctgcc 194
           ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 123 tgcagctgccggtccacagccgcgcgcagctgcgcgtggggttctacaacaccacctgcc 182

                                           
Query: 195 ccaacgccgaggccatcgtccggcaggccgtc 226
           ||||||||||||||||||||||||||||||||
Sbjct: 183 ccaacgccgaggccatcgtccggcaggccgtc 214
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>ref|NM_183815.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1071

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                       
Query: 152 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 211
           ||||||| ||||||||  || |||||||||||||||| ||||||||| |||||| |  | 
Sbjct: 73  agccgcggccagctgcaggtggggttctacaacaccagctgccccaatgccgagacgctg 132

                          
Query: 212 gtccggcaggccgtc 226
           |||||||||||||||
Sbjct: 133 gtccggcaggccgtc 147
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>emb|AJ401274.1|ZMA401274 Zea mays mRNA for peroxidase (pox1 gene)
          Length = 1398

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                              
Query: 176 ttctacaacaccacctgccccaacgccgaggccatcgtccggcaggccgtc 226
           |||||| |||||| ||||||||||||||||||| ||||||| |||||||||
Sbjct: 168 ttctacgacaccagctgccccaacgccgaggccctcgtccgccaggccgtc 218
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                            
Query: 152      agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 211
                ||||||| ||||||||  || |||||||||||||||| ||||||||| |||||| |  | 
Sbjct: 12534345 agccgcggccagctgcaggtggggttctacaacaccagctgccccaatgccgagacgctg 12534404

                               
Query: 212      gtccggcaggccgtc 226
                |||||||||||||||
Sbjct: 12534405 gtccggcaggccgtc 12534419



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                            
Query: 167      cgcgtcgggttctacaacaccacctgccccaacgccgaggccatcgtccggcaggccgtc 226
                ||||||||||||||| | | || ||||||||||||||||||  ||||||| |||||||||
Sbjct: 12482977 cgcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccgccaggccgtc 12483036



 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                            
Query: 152      agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 211
                ||||| || |||||||  || |||||||||||||| | |||||||| |||||||||  | 
Sbjct: 12547310 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggcgctg 12547369

                               
Query: 212      gtccggcaggccgtc 226
                |||||||||||||||
Sbjct: 12547370 gtccggcaggccgtc 12547384
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>dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0537A05
          Length = 152396

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                         
Query: 152   agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 211
             ||||||| ||||||||  || |||||||||||||||| ||||||||| |||||| |  | 
Sbjct: 45955 agccgcggccagctgcaggtggggttctacaacaccagctgccccaatgccgagacgctg 46014

                            
Query: 212   gtccggcaggccgtc 226
             |||||||||||||||
Sbjct: 46015 gtccggcaggccgtc 46029



 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                         
Query: 152   agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 211
             ||||| || |||||||  || |||||||||||||| | |||||||| |||||||||  | 
Sbjct: 58920 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggcgctg 58979

                            
Query: 212   gtccggcaggccgtc 226
             |||||||||||||||
Sbjct: 58980 gtccggcaggccgtc 58994
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>dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1135C02
          Length = 152306

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                          
Query: 152    agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 211
              ||||||| ||||||||  || |||||||||||||||| ||||||||| |||||| |  | 
Sbjct: 119960 agccgcggccagctgcaggtggggttctacaacaccagctgccccaatgccgagacgctg 120019

                             
Query: 212    gtccggcaggccgtc 226
              |||||||||||||||
Sbjct: 120020 gtccggcaggccgtc 120034



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                         
Query: 167   cgcgtcgggttctacaacaccacctgccccaacgccgaggccatcgtccggcaggccgtc 226
             ||||||||||||||| | | || ||||||||||||||||||  ||||||| |||||||||
Sbjct: 68592 cgcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccgccaggccgtc 68651



 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                          
Query: 152    agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 211
              ||||| || |||||||  || |||||||||||||| | |||||||| |||||||||  | 
Sbjct: 132925 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggcgctg 132984

                             
Query: 212    gtccggcaggccgtc 226
              |||||||||||||||
Sbjct: 132985 gtccggcaggccgtc 132999
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>dbj|AK121616.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044C11, full
           insert sequence
          Length = 5938

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                       
Query: 152 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 211
           ||||||| ||||||||  || |||||||||||||||| ||||||||| |||||| |  | 
Sbjct: 135 agccgcggccagctgcaggtggggttctacaacaccagctgccccaatgccgagacgctg 194

                          
Query: 212 gtccggcaggccgtc 226
           |||||||||||||||
Sbjct: 195 gtccggcaggccgtc 209
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>tpe|BN000543.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx14 gene for
           class III peroxidase 14 precursor, exons 1-3
          Length = 5620

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                       
Query: 152 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 211
           ||||||| ||||||||  || |||||||||||||||| ||||||||| |||||| |  | 
Sbjct: 73  agccgcggccagctgcaggtggggttctacaacaccagctgccccaatgccgagacgctg 132

                          
Query: 212 gtccggcaggccgtc 226
           |||||||||||||||
Sbjct: 133 gtccggcaggccgtc 147
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>ref|NM_183810.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1041

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                       
Query: 167 cgcgtcgggttctacaacaccacctgccccaacgccgaggccatcgtccggcaggccgtc 226
           ||||||||||||||| | | || ||||||||||||||||||  ||||||| |||||||||
Sbjct: 70  cgcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccgccaggccgtc 129
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>dbj|AK068894.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001H23, full
           insert sequence
          Length = 1382

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                       
Query: 167 cgcgtcgggttctacaacaccacctgccccaacgccgaggccatcgtccggcaggccgtc 226
           ||||||||||||||| | | || ||||||||||||||||||  ||||||| |||||||||
Sbjct: 177 cgcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccgccaggccgtc 236
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>tpe|BN000541.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx12 gene for
           class III peroxidase 12 precursor, exons 1-3
          Length = 3928

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                       
Query: 167 cgcgtcgggttctacaacaccacctgccccaacgccgaggccatcgtccggcaggccgtc 226
           ||||||||||||||| | | || ||||||||||||||||||  ||||||| |||||||||
Sbjct: 70  cgcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccgccaggccgtc 129
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>ref|NM_183816.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1062

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                       
Query: 152 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 211
           ||||| || |||||||  || |||||||||||||| | |||||||| |||||||||  | 
Sbjct: 76  agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggcgctg 135

                          
Query: 212 gtccggcaggccgtc 226
           |||||||||||||||
Sbjct: 136 gtccggcaggccgtc 150
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>dbj|AK099187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107P11, full
           insert sequence
          Length = 1271

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                       
Query: 152 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 211
           ||||| || |||||||  || |||||||||||||| | |||||||| |||||||||  | 
Sbjct: 146 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggcgctg 205

                          
Query: 212 gtccggcaggccgtc 226
           |||||||||||||||
Sbjct: 206 gtccggcaggccgtc 220
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>dbj|AK070715.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023058L02, full
           insert sequence
          Length = 1492

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                       
Query: 152 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 211
           ||||| || |||||||  || |||||||||||||| | |||||||| |||||||||  | 
Sbjct: 151 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggcgctg 210

                          
Query: 212 gtccggcaggccgtc 226
           |||||||||||||||
Sbjct: 211 gtccggcaggccgtc 225
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>tpe|BN000544.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx15 gene for
           class III peroxidase 15 precursor, exons 1-3
          Length = 5322

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                       
Query: 152 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 211
           ||||| || |||||||  || |||||||||||||| | |||||||| |||||||||  | 
Sbjct: 76  agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggcgctg 135

                          
Query: 212 gtccggcaggccgtc 226
           |||||||||||||||
Sbjct: 136 gtccggcaggccgtc 150
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>dbj|AK060115.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E07, full
           insert sequence
          Length = 1008

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 152 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggc 207
           ||||| || |||||||  || |||||||||||||| | |||||||| |||||||||
Sbjct: 149 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggc 204
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>gb|AY816748.1| Synthetic construct clone pcNiV-Fopt C-terminal-Au1-tagged F protein
            gene, complete cds
          Length = 1659

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 180  acaacaccacctgccccaacgccg 203
            |||||||||||||||||| |||||
Sbjct: 1238 acaacaccacctgccccaccgccg 1261
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 94     cctggccggtctggcggtgctgct 117
              ||||||||||||||| ||||||||
Sbjct: 952400 cctggccggtctggccgtgctgct 952377
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 199     cgccgaggccatcgtccggcaggc 222
               |||||||||||||| |||||||||
Sbjct: 4743057 cgccgaggccatcgaccggcaggc 4743034
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 87      gcggcagcctggccggtctg 106
               ||||||||||||||||||||
Sbjct: 4650072 gcggcagcctggccggtctg 4650053


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,363,621
Number of Sequences: 3902068
Number of extensions: 1363621
Number of successful extensions: 104916
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104003
Number of HSP's gapped (non-prelim): 913
length of query: 226
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 204
effective length of database: 17,147,199,772
effective search space: 3498028753488
effective search space used: 3498028753488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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