ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet51f11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL772340.19| Zebrafish DNA sequence from clone CH211-150G2, ... 42 0.14
2emb|Z83335.1|SPZ83335 S.pneumoniae dexB, cap1[A,B,C,D,E,F,G,H,I,... 40 0.55
3gb|AC120057.9| Homo sapiens chromosome 17, clone CTD-2545G14, co... 40 0.55
4emb|CR931632.1| Streptococcus pneumoniae strain 519/43 (serotype 1) 40 0.55
5gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold 38 2.2
6ref|XM_419672.1| PREDICTED: Gallus gallus similar to mitochondri... 38 2.2
7gb|AC132385.5| Mus musculus BAC clone RP23-438F21 from chromosom... 38 2.2
8gb|AC128680.6| Homo sapiens 3 BAC RP13-551P9 (Roswell Park Cance... 38 2.2
9gb|AC146661.3| Callithrix jacchus clone CH259-140E16, complete s... 38 2.2
10dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 2.2
11dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 2.2
12dbj|AP004750.2| Oryza sativa (japonica cultivar-group) genomic D... 38 2.2
13dbj|AP003842.5| Oryza sativa (japonica cultivar-group) genomic D... 38 2.2
14dbj|AB124586.1| Pan troglodytes RBP4 gene for retinol binding pr... 38 2.2
15dbj|AK120608.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 2.2
16dbj|AK109614.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 2.2
17gb|AC007934.7|AC007934 Homo sapiens, clone RP11-29A1, complete s... 38 2.2
18dbj|AP000843.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 38 2.2
19emb|AL954359.5| Zebrafish DNA sequence from clone CH211-270N8, c... 38 2.2
20gb|CP000225.1| Drosophila melanogaster genomic scaffold 21100002... 38 2.2
21dbj|AP003029.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 38 2.2
22gb|AC158901.5| Mus musculus chromosome 15, clone RP23-77K13, com... 36 8.6
23gb|AC159445.1| Trypanosoma brucei chromosome 8 clone RPCI93-30P3... 36 8.6
24gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence 36 8.6
25gb|AC137974.13| Mus musculus chromosome 15, clone RP23-17J3, com... 36 8.6
26gb|AC186561.1| Gasterosteus aculeatus clone VMRC28-125N12, compl... 36 8.6
27ref|XR_003012.1| PREDICTED: Mus musculus similar to Mitotic spin... 36 8.6
28ref|XM_819590.1| Trypanosoma brucei TREU927 clone RPCI93-30P3 am... 36 8.6
29gb|AC127269.3| Mus musculus BAC clone RP23-432B20 from chromosom... 36 8.6
30gb|AC124742.4| Mus musculus BAC clone RP23-210N16 from 12, compl... 36 8.6
31gb|AC107662.9| Mus musculus chromosome 9, clone RP23-99B22, comp... 36 8.6
32gb|AC119415.13| Medicago truncatula clone mth2-27n2, complete se... 36 8.6
33gb|AF528737.1| Polychrus acutirostris NADH dehydrogenase subunit... 36 8.6
34emb|AL356214.20| Human DNA sequence from clone RP11-30E16 on chr... 36 8.6
35emb|AL136117.12| Human DNA sequence from clone CTC-1333E1 on chr... 36 8.6
36emb|AL133286.9| Human DNA sequence from clone RP4-580N22 on chro... 36 8.6
37gb|AC161196.4| Mus musculus chromosome 15, clone RP23-319G15, co... 36 8.6
38gb|AC005383.2| Homo sapiens chromosome 10 clone CIT987SK-1144G6 ... 36 8.6
39emb|AL592522.12| Mouse DNA sequence from clone RP23-210M6 on chr... 36 8.6
40gb|AC159897.2| Mus musculus BAC clone RP23-191E14 from chromosom... 36 8.6
41gb|AC126789.20| Medicago truncatula clone mth2-36n23, complete s... 36 8.6
42gb|AC095030.2| Homo sapiens chromosome 1 clone RP11-375A5, compl... 36 8.6
43gb|AC023110.8| Homo sapiens BAC clone RP11-204H9 from 4, complet... 36 8.6
44emb|CR478112.2| Mouse DNA sequence from clone WI1-2389C6 on chro... 36 8.6
45gb|AF055925.2| Polychrus acutirostris NADH dehydrogenase subunit... 36 8.6
46dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticu... 36 8.6
47emb|BX072577.14| Zebrafish DNA sequence from clone CH211-151G22 ... 36 8.6
48emb|BX897687.7| Zebrafish DNA sequence from clone DKEY-151O8, co... 36 8.6
49gb|AC021015.4| Homo sapiens BAC clone RP11-320C1 from 2, complet... 36 8.6
50gb|AC007322.4|AC007322 Homo sapiens BAC clone RP11-553C13 from Y... 36 8.6
51gb|AC008175.2|AC008175 Homo sapiens BAC clone RP11-427G18 from Y... 36 8.6
52ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P... 36 8.6
53gb|AC019159.8| Homo sapiens BAC clone RP11-56O18 from 2, complet... 36 8.6
54emb|AL928946.17| Zebrafish DNA sequence from clone CH211-265D20 ... 36 8.6
55gb|AC156503.1| Mus musculus BAC clone RP23-272M11 from 9, comple... 36 8.6
56emb|AL928691.7| Zebrafish DNA sequence from clone CH211-51H20 in... 36 8.6
57gb|DQ320317.1| Petromyzon marinus thyroid hormone receptor 1 mRN... 36 8.6
58gb|AY572973.1| Homo sapiens colon cancer secreted protein-2 (CCS... 36 8.6
59emb|AL928837.8| Zebrafish DNA sequence from clone CH211-105F16, ... 36 8.6
60emb|AL732321.18| Mouse DNA sequence from clone RP23-167N17 on ch... 36 8.6
61emb|AL840626.7| Mouse DNA sequence from clone RP23-151M8 on chro... 36 8.6
62emb|AL672100.7| Mouse DNA sequence from clone RP23-125A1 on chro... 36 8.6
63emb|AL806532.10| Mouse DNA sequence from clone RP23-387D16 on ch... 36 8.6
64emb|AL671893.7| Mouse DNA sequence from clone RP23-170G19 on chr... 36 8.6
65emb|X94354.1|HSCGMPPDE H.sapiens DNA for Cone cGMP-PDE gene 36 8.6 
>emb|AL772340.19| Zebrafish DNA sequence from clone CH211-150G2, complete sequence
          Length = 174176

 Score = 42.1 bits (21), Expect = 0.14
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 11     taaaacaaatctgttactcccaatt 35
              |||||||||| ||||||||||||||
Sbjct: 110628 taaaacaaatgtgttactcccaatt 110652
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>emb|Z83335.1|SPZ83335 S.pneumoniae dexB, cap1[A,B,C,D,E,F,G,H,I,J,K] genes, dTDP-rhamnose
            biosynthesis genes and aliA gene
          Length = 23770

 Score = 40.1 bits (20), Expect = 0.55
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 25   tactcccaattcctctgctt 44
            ||||||||||||||||||||
Sbjct: 9737 tactcccaattcctctgctt 9718
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>gb|AC120057.9| Homo sapiens chromosome 17, clone CTD-2545G14, complete sequence
          Length = 198821

 Score = 40.1 bits (20), Expect = 0.55
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    tcctctgcttcccacagccg 54
             ||||||||||||||||||||
Sbjct: 77372 tcctctgcttcccacagccg 77353
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>emb|CR931632.1| Streptococcus pneumoniae strain 519/43 (serotype 1)
          Length = 22182

 Score = 40.1 bits (20), Expect = 0.55
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 25   tactcccaattcctctgctt 44
            ||||||||||||||||||||
Sbjct: 9203 tactcccaattcctctgctt 9184
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>gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold
          Length = 1952403

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 10      ctaaaacaaatctgttact 28
               |||||||||||||||||||
Sbjct: 1426482 ctaaaacaaatctgttact 1426464
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>ref|XM_419672.1| PREDICTED: Gallus gallus similar to mitochondrial
           C1-tetrahydrofolate synthase (LOC421633), mRNA
          Length = 2694

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 21  ctgttactcccaattcctctgct 43
           ||||||||||||| |||||||||
Sbjct: 916 ctgttactcccaaatcctctgct 894
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>gb|AC132385.5| Mus musculus BAC clone RP23-438F21 from chromosome 18, complete
             sequence
          Length = 184478

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 36    cctctgcttcccacagccg 54
             |||||||||||||||||||
Sbjct: 77191 cctctgcttcccacagccg 77209
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>gb|AC128680.6| Homo sapiens 3 BAC RP13-551P9 (Roswell Park Cancer institute Human BAC
             Library) complete sequence
          Length = 146175

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    tgttactcccaattcctct 40
             |||||||||||||||||||
Sbjct: 21001 tgttactcccaattcctct 21019
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>gb|AC146661.3| Callithrix jacchus clone CH259-140E16, complete sequence
          Length = 173865

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 10    ctaaaacaaatctgttact 28
             |||||||||||||||||||
Sbjct: 60933 ctaaaacaaatctgttact 60915
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 10      ctaaaacaaatctgttact 28
               |||||||||||||||||||
Sbjct: 3643007 ctaaaacaaatctgttact 3643025
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 38       tctgcttcccacagccgcg 56
                |||||||||||||||||||
Sbjct: 12495223 tctgcttcccacagccgcg 12495241
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>dbj|AP004750.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0421H01
          Length = 142638

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    tctgcttcccacagccgcg 56
             |||||||||||||||||||
Sbjct: 68957 tctgcttcccacagccgcg 68975
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>dbj|AP003842.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1641_C04
          Length = 134367

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 10     ctaaaacaaatctgttact 28
              |||||||||||||||||||
Sbjct: 112324 ctaaaacaaatctgttact 112342
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>dbj|AB124586.1| Pan troglodytes RBP4 gene for retinol binding protein4, complete cds
          Length = 173042

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 9     actaaaacaaatctgttac 27
             |||||||||||||||||||
Sbjct: 78260 actaaaacaaatctgttac 78242
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>dbj|AK120608.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151F13, full
            insert sequence
          Length = 1663

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 10   ctaaaacaaatctgttact 28
            |||||||||||||||||||
Sbjct: 1660 ctaaaacaaatctgttact 1642
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>dbj|AK109614.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-G10, full
           insert sequence
          Length = 1304

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 38  tctgcttcccacagccgcg 56
           |||||||||||||||||||
Sbjct: 211 tctgcttcccacagccgcg 193
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>gb|AC007934.7|AC007934 Homo sapiens, clone RP11-29A1, complete sequence
          Length = 157625

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 22    tgttactcccaattcctct 40
             |||||||||||||||||||
Sbjct: 45864 tgttactcccaattcctct 45846
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>dbj|AP000843.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-684N3, complete
              sequence
          Length = 191204

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 31     caattcctctgcttcccac 49
              |||||||||||||||||||
Sbjct: 189172 caattcctctgcttcccac 189154
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>emb|AL954359.5| Zebrafish DNA sequence from clone CH211-270N8, complete sequence
          Length = 167392

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     catctactactaaaacaaa 19
             |||||||||||||||||||
Sbjct: 90668 catctactactaaaacaaa 90650
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>gb|CP000225.1| Drosophila melanogaster genomic scaffold 211000022280724
          Length = 820587

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 18     aatctgttactcccaattc 36
              |||||||||||||||||||
Sbjct: 271950 aatctgttactcccaattc 271968
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>dbj|AP003029.2| Homo sapiens genomic DNA, chromosome 11q, clone:CTC-343F17, complete
             sequence
          Length = 142882

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 31    caattcctctgcttcccac 49
             |||||||||||||||||||
Sbjct: 59879 caattcctctgcttcccac 59861
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>gb|AC158901.5| Mus musculus chromosome 15, clone RP23-77K13, complete sequence
          Length = 192643

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 4      ctactactaaaacaaatc 21
              ||||||||||||||||||
Sbjct: 116681 ctactactaaaacaaatc 116664
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>gb|AC159445.1| Trypanosoma brucei chromosome 8 clone RPCI93-30P3, complete sequence
          Length = 98658

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 36    cctctgcttcccacagcc 53
             ||||||||||||||||||
Sbjct: 82646 cctctgcttcccacagcc 82663
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>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence
          Length = 2481190

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 36      cctctgcttcccacagcc 53
               ||||||||||||||||||
Sbjct: 2166739 cctctgcttcccacagcc 2166722
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>gb|AC137974.13| Mus musculus chromosome 15, clone RP23-17J3, complete sequence
          Length = 219617

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 4     ctactactaaaacaaatc 21
             ||||||||||||||||||
Sbjct: 75256 ctactactaaaacaaatc 75239
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>gb|AC186561.1| Gasterosteus aculeatus clone VMRC28-125N12, complete sequence
          Length = 147166

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 39    ctgcttcccacagccgcg 56
             ||||||||||||||||||
Sbjct: 29105 ctgcttcccacagccgcg 29088
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>ref|XR_003012.1| PREDICTED: Mus musculus similar to Mitotic spindle assembly
            checkpoint protein MAD1 (Mitotic arrest deficient-like
            protein 1) (MAD1-like 1) (LOC547043), mRNA
          Length = 1311

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 30   ccaattcctctgcttcccacag 51
            |||| |||||||||||||||||
Sbjct: 1068 ccaagtcctctgcttcccacag 1047
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>ref|XM_819590.1| Trypanosoma brucei TREU927 clone RPCI93-30P3 aminopeptidase
           (Tb927.8.7520) partial mRNA
          Length = 1956

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 36  cctctgcttcccacagcc 53
           ||||||||||||||||||
Sbjct: 893 cctctgcttcccacagcc 876
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>gb|AC127269.3| Mus musculus BAC clone RP23-432B20 from chromosome 9, complete sequence
          Length = 212660

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 9      actaaaacaaatctgtta 26
              ||||||||||||||||||
Sbjct: 126358 actaaaacaaatctgtta 126375
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>gb|AC124742.4| Mus musculus BAC clone RP23-210N16 from 12, complete sequence
          Length = 208101

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 13     aaacaaatctgttactcc 30
              ||||||||||||||||||
Sbjct: 167032 aaacaaatctgttactcc 167015
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>gb|AC107662.9| Mus musculus chromosome 9, clone RP23-99B22, complete sequence
          Length = 233476

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 30    ccaattcctctgcttcccacag 51
             |||| |||||||||||||||||
Sbjct: 72204 ccaagtcctctgcttcccacag 72225
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>gb|AC119415.13| Medicago truncatula clone mth2-27n2, complete sequence
          Length = 139330

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 2      atctactactaaaacaaa 19
              ||||||||||||||||||
Sbjct: 103179 atctactactaaaacaaa 103196
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>gb|AF528737.1| Polychrus acutirostris NADH dehydrogenase subunit 1 (ND1) gene,
            partial cds; tRNA-Ile, tRNA-Gln, and tRNA-Met genes,
            complete sequence; NADH dehydrogenase subunit 2 (ND2)
            gene, complete cds; tRNA-Trp, tRNA-Ala, tRNA-Asn,
            tRNA-Cys, and tRNA-Tyr genes, complete sequence; and
            cytochrome c oxidase subunit I (COI) gene, partial cds;
            mitochondrial genes for mitochondrial products
          Length = 1728

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 32   aattcctctgcttcccacagcc 53
            ||||||||||||| ||||||||
Sbjct: 1643 aattcctctgcttaccacagcc 1622
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>emb|AL356214.20| Human DNA sequence from clone RP11-30E16 on chromosome 10 Contains the
              C10orf3 gene for chromosome 10 open reading frame 3, the
              RBP4 gene for retinol binding protein 4 (plasma), the 5'
              end of the PDE6C gene for phosphodiesterase 6C
              (cGMP-specific, cone, alpha prime), the GPR120 gene for G
              protein-coupled receptor 120 and three CpG islands,
              complete sequence
          Length = 163964

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 10     ctaaaacaaatctgttac 27
              ||||||||||||||||||
Sbjct: 149649 ctaaaacaaatctgttac 149666
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>emb|AL136117.12| Human DNA sequence from clone CTC-1333E1 on chromosome 6, complete
             sequence
          Length = 86514

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 32    aattcctctgcttcccacagcc 53
             ||||||||| ||||||||||||
Sbjct: 74917 aattcctcttcttcccacagcc 74896
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>emb|AL133286.9| Human DNA sequence from clone RP4-580N22 on chromosome 1q42.2-44
             Contains the 3' end of the CHS1 gene for Chediak-Higashi
             syndrome 1 protein and a CpG island, complete sequence
          Length = 93354

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 22    tgttactcccaattcctc 39
             ||||||||||||||||||
Sbjct: 33583 tgttactcccaattcctc 33600
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>gb|AC161196.4| Mus musculus chromosome 15, clone RP23-319G15, complete sequence
          Length = 177873

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 4    ctactactaaaacaaatc 21
            ||||||||||||||||||
Sbjct: 7537 ctactactaaaacaaatc 7520
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>gb|AC005383.2| Homo sapiens chromosome 10 clone CIT987SK-1144G6 map 10q25.1, complete
             sequence
          Length = 121774

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 31    caattcctctgcttccca 48
             ||||||||||||||||||
Sbjct: 44997 caattcctctgcttccca 44980
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>emb|AL592522.12| Mouse DNA sequence from clone RP23-210M6 on chromosome 11 Contains the
              genes for two novel 7 transmembrane receptor (rhodopsin
              family) domain-containing proteins, a high mobility group
              box 1 (Hmgb1) pseudogene, the Cias1 gene for cold
              autoinflammatory syndrome 1 homolog (human), a novel gene
              (4933439C10Rik), the gene for a novel protein (D130067D09),
              a ribosomal protein L18 (Rpl18) pseudogene, an ariadne
              homolog 2 (Drosophila) (Arih2) pseudogene, the gene for a
              novel zinc finger domain-containing protein, the 3' end of
              the gene for a novel protein and one CpG island, complete
              sequence
          Length = 157300

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 35     tcctctgcttcccacagc 52
              ||||||||||||||||||
Sbjct: 124857 tcctctgcttcccacagc 124874
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>gb|AC159897.2| Mus musculus BAC clone RP23-191E14 from chromosome 12, complete
            sequence
          Length = 216485

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 13   aaacaaatctgttactcc 30
            ||||||||||||||||||
Sbjct: 8520 aaacaaatctgttactcc 8503
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>gb|AC126789.20| Medicago truncatula clone mth2-36n23, complete sequence
          Length = 126875

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 2     atctactactaaaacaaa 19
             ||||||||||||||||||
Sbjct: 57339 atctactactaaaacaaa 57356
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>gb|AC095030.2| Homo sapiens chromosome 1 clone RP11-375A5, complete sequence
          Length = 142007

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 32     aattcctctgcttcccacagcc 53
              |||||| |||||||||||||||
Sbjct: 100296 aattccactgcttcccacagcc 100275
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>gb|AC023110.8| Homo sapiens BAC clone RP11-204H9 from 4, complete sequence
          Length = 165004

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 8      tactaaaacaaatctgtt 25
              ||||||||||||||||||
Sbjct: 157428 tactaaaacaaatctgtt 157445
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>emb|CR478112.2| Mouse DNA sequence from clone WI1-2389C6 on chromosome X, complete
            sequence
          Length = 30869

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 27   ctcccaattcctctgctt 44
            ||||||||||||||||||
Sbjct: 5533 ctcccaattcctctgctt 5550
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>gb|AF055925.2| Polychrus acutirostris NADH dehydrogenase subunit II (ND2) gene,
            complete cds; tRNA-Trp, tRNA-Ala, tRNA-Asn, tRNA-Cys, and
            tRNA-Tyr genes, complete sequence; and cytochrome oxidase
            subunit I gene, partial cds; mitochondrial genes for
            mitochondrial products
          Length = 1427

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 32   aattcctctgcttcccacagcc 53
            ||||||||||||| ||||||||
Sbjct: 1354 aattcctctgcttaccacagcc 1333
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>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete
               genome
          Length = 2516575

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 1       catctactactaaaacaa 18
               ||||||||||||||||||
Sbjct: 1749346 catctactactaaaacaa 1749363
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>emb|BX072577.14| Zebrafish DNA sequence from clone CH211-151G22 in linkage group 21,
              complete sequence
          Length = 160341

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 11     taaaacaaatctgttact 28
              ||||||||||||||||||
Sbjct: 100516 taaaacaaatctgttact 100499
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>emb|BX897687.7| Zebrafish DNA sequence from clone DKEY-151O8, complete sequence
          Length = 208227

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 11     taaaacaaatctgttact 28
              ||||||||||||||||||
Sbjct: 137839 taaaacaaatctgttact 137856
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>gb|AC021015.4| Homo sapiens BAC clone RP11-320C1 from 2, complete sequence
          Length = 148997

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 11     taaaacaaatctgttact 28
              ||||||||||||||||||
Sbjct: 123295 taaaacaaatctgttact 123312
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>gb|AC007322.4|AC007322 Homo sapiens BAC clone RP11-553C13 from Y, complete sequence
          Length = 184215

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 35     tcctctgcttcccacagc 52
              ||||||||||||||||||
Sbjct: 130782 tcctctgcttcccacagc 130799
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>gb|AC008175.2|AC008175 Homo sapiens BAC clone RP11-427G18 from Y, complete sequence
          Length = 205237

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 35     tcctctgcttcccacagc 52
              ||||||||||||||||||
Sbjct: 157552 tcctctgcttcccacagc 157535
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>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2
              (P1-P2-P3-IR2@) on chromosome Y
          Length = 4538292

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 35     tcctctgcttcccacagc 52
              ||||||||||||||||||
Sbjct: 796647 tcctctgcttcccacagc 796630



 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 35     tcctctgcttcccacagc 52
              ||||||||||||||||||
Sbjct: 167977 tcctctgcttcccacagc 167994
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>gb|AC019159.8| Homo sapiens BAC clone RP11-56O18 from 2, complete sequence
          Length = 163085

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 12   aaaacaaatctgttactcccaa 33
            ||||||||| ||||||||||||
Sbjct: 8625 aaaacaaatttgttactcccaa 8646
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>emb|AL928946.17| Zebrafish DNA sequence from clone CH211-265D20 in linkage group 20,
             complete sequence
          Length = 157379

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 11    taaaacaaatctgttact 28
             ||||||||||||||||||
Sbjct: 39889 taaaacaaatctgttact 39906
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>gb|AC156503.1| Mus musculus BAC clone RP23-272M11 from 9, complete sequence
          Length = 162078

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 9     actaaaacaaatctgtta 26
             ||||||||||||||||||
Sbjct: 19585 actaaaacaaatctgtta 19602
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>emb|AL928691.7| Zebrafish DNA sequence from clone CH211-51H20 in linkage group 14,
              complete sequence
          Length = 167320

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 26     actcccaattcctctgct 43
              ||||||||||||||||||
Sbjct: 166108 actcccaattcctctgct 166125
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>gb|DQ320317.1| Petromyzon marinus thyroid hormone receptor 1 mRNA, complete cds
          Length = 2752

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 43  ttcccacagccgcgtcct 60
           ||||||||||||||||||
Sbjct: 372 ttcccacagccgcgtcct 389
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>gb|AY572973.1| Homo sapiens colon cancer secreted protein-2 (CCSP-2) gene, complete
             cds
          Length = 52487

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 31    caattcctctgcttccca 48
             ||||||||||||||||||
Sbjct: 18570 caattcctctgcttccca 18553
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>emb|AL928837.8| Zebrafish DNA sequence from clone CH211-105F16, complete sequence
          Length = 186085

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 11     taaaacaaatctgttact 28
              ||||||||||||||||||
Sbjct: 104383 taaaacaaatctgttact 104366
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>emb|AL732321.18| Mouse DNA sequence from clone RP23-167N17 on chromosome X, complete
              sequence
          Length = 216244

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 4      ctactactaaaacaaatc 21
              ||||||||||||||||||
Sbjct: 176552 ctactactaaaacaaatc 176535
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>emb|AL840626.7| Mouse DNA sequence from clone RP23-151M8 on chromosome 2, complete
              sequence
          Length = 181014

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 33     attcctctgcttcccaca 50
              ||||||||||||||||||
Sbjct: 170057 attcctctgcttcccaca 170074
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>emb|AL672100.7| Mouse DNA sequence from clone RP23-125A1 on chromosome 2, complete
             sequence
          Length = 196421

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 37    ctctgcttcccacagccg 54
             ||||||||||||||||||
Sbjct: 20228 ctctgcttcccacagccg 20245
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>emb|AL806532.10| Mouse DNA sequence from clone RP23-387D16 on chromosome X, complete
              sequence
          Length = 209714

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 24     ttactcccaattcctctg 41
              ||||||||||||||||||
Sbjct: 107498 ttactcccaattcctctg 107515
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>emb|AL671893.7| Mouse DNA sequence from clone RP23-170G19 on chromosome X, complete
             sequence
          Length = 175057

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 12    aaaacaaatctgttactc 29
             ||||||||||||||||||
Sbjct: 75616 aaaacaaatctgttactc 75633
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>emb|X94354.1|HSCGMPPDE H.sapiens DNA for Cone cGMP-PDE gene
          Length = 13975

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 10   ctaaaacaaatctgttac 27
            ||||||||||||||||||
Sbjct: 7222 ctaaaacaaatctgttac 7239


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 631,783
Number of Sequences: 3902068
Number of extensions: 631783
Number of successful extensions: 57310
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57152
Number of HSP's gapped (non-prelim): 158
length of query: 60
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 39
effective length of database: 17,151,101,840
effective search space: 668892971760
effective search space used: 668892971760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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