ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet51e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CRD1_HORVU (Q5EFU4) Magnesium-protoporphyrin IX monomethyl ester... 61 7e-10
2FANCJ_CHICK (Q3YK19) Fanconi anemia group J protein homolog (EC ... 28 7.0

>CRD1_HORVU (Q5EFU4) Magnesium-protoporphyrin IX monomethyl ester [oxidative]|
           cyclase, chloroplast precursor (EC 1.14.13.81)
           (Mg-protoporphyrin IX monomethyl ester oxidative
           cyclase) (Protein Xantha-l)
          Length = 417

 Score = 61.2 bits (147), Expect = 7e-10
 Identities = 29/29 (100%), Positives = 29/29 (100%)
 Frame = +3

Query: 51  MASAMELSLLNPAMHHYGIAAKTASHLPV 137
           MASAMELSLLNPAMHHYGIAAKTASHLPV
Sbjct: 1   MASAMELSLLNPAMHHYGIAAKTASHLPV 29



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>FANCJ_CHICK (Q3YK19) Fanconi anemia group J protein homolog (EC 3.6.1.-)|
           (ATP-dependent RNA helicase BRIP1) (Protein FACJ)
          Length = 1252

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
 Frame = +2

Query: 5   SSLPFRAVCHSRSSED----GVRHGA 70
           +SLP R VCHSRS       G  HGA
Sbjct: 86  ASLPCRCVCHSRSESSEATAGASHGA 111


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,846,955
Number of Sequences: 219361
Number of extensions: 300900
Number of successful extensions: 1137
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 80,573,946
effective HSP length: 21
effective length of database: 75,967,365
effective search space used: 1823216760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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