>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome
          Length = 2971517

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 99      cgtgctggtggcgctgctctcc 120
               ||||||||||||||||||||||
Sbjct: 1643481 cgtgctggtggcgctgctctcc 1643460

>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16
          Length = 348706

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 96    gctcgtgctggtggcgctgctc 117
             ||||||||||||||||||||||
Sbjct: 13280 gctcgtgctggtggcgctgctc 13301

>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14
          Length = 348997

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 96     gctcgtgctggtggcgctgctc 117
              ||||||||||||||||||||||
Sbjct: 270060 gctcgtgctggtggcgctgctc 270081

>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12
          Length = 349354

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 96     gctcgtgctggtggcgctgctc 117
              ||||||||||||||||||||||
Sbjct: 203717 gctcgtgctggtggcgctgctc 203738

>ref|NM_183669.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 882

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 95  cgctcgtgctggtggcgctgc 115
           |||||||||||||||||||||
Sbjct: 712 cgctcgtgctggtggcgctgc 692

>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 123   gctggccgcgccgtcgtcggc 143
             |||||||||||||||||||||
Sbjct: 15015 gctggccgcgccgtcgtcggc 15035

>gb|AY459337.1| Oryza sativa (japonica cultivar-group) clone CL003615.3 R2R3-MYB gene
            region
          Length = 42296

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 95   cgctcgtgctggtggcgctgc 115
            |||||||||||||||||||||
Sbjct: 8578 cgctcgtgctggtggcgctgc 8598

>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 93      gccgctcgtgctggtggcgctgctc 117
               |||| ||||||||||||||||||||
Sbjct: 3685255 gccgttcgtgctggtggcgctgctc 3685231

>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29
          Length = 283100

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 118    tccgtgctggccgcgccgtcgtcgg 142
              ||||||| |||||||||||||||||
Sbjct: 269375 tccgtgcgggccgcgccgtcgtcgg 269399

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 95       cgctcgtgctggtggcgctgc 115
                |||||||||||||||||||||
Sbjct: 10933775 cgctcgtgctggtggcgctgc 10933755



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 97      ctcgtgctggtggcgctgct 116
               ||||||||||||||||||||
Sbjct: 8521941 ctcgtgctggtggcgctgct 8521960

>dbj|AP003140.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0025P13
          Length = 133242

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 95     cgctcgtgctggtggcgctgc 115
              |||||||||||||||||||||
Sbjct: 120791 cgctcgtgctggtggcgctgc 120771

>dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0487H02
          Length = 145491

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 95    cgctcgtgctggtggcgctgc 115
             |||||||||||||||||||||
Sbjct: 36617 cgctcgtgctggtggcgctgc 36597

>gb|AY106116.1| Zea mays PCO091367 mRNA sequence
          Length = 842

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 301 tgccccgtggacgtgctgaagctgg 325
           ||||||||||||| |||||||||||
Sbjct: 317 tgccccgtggacgcgctgaagctgg 341

>gb|AY387687.1| Triticum aestivum harpin binding protein 1 (HrBP1-2) mRNA, complete
           cds
          Length = 1205

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 125 tggccgcgccgtcgtcggcg 144
           ||||||||||||||||||||
Sbjct: 315 tggccgcgccgtcgtcggcg 334

>ref|NM_187907.1| Oryza sativa (japonica cultivar-group), Ozsa8349 predicted mRNA
          Length = 1365

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 97   ctcgtgctggtggcgctgct 116
            ||||||||||||||||||||
Sbjct: 1220 ctcgtgctggtggcgctgct 1201

>ref|XM_471003.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 981

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 102 gctggtggcgctgctctccgtgct 125
           |||||||||||||||| |||||||
Sbjct: 816 gctggtggcgctgctcgccgtgct 839

>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   gctggtggcgctgctctccg 121
             ||||||||||||||||||||
Sbjct: 85477 gctggtggcgctgctctccg 85496

>emb|AL606642.3|OSJN00073 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027H06,
             complete sequence
          Length = 143730

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 102   gctggtggcgctgctctccgtgct 125
             |||||||||||||||| |||||||
Sbjct: 90804 gctggtggcgctgctcgccgtgct 90781

>dbj|AP000570.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0711E10
          Length = 157903

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    ctcgtgctggtggcgctgct 116
             ||||||||||||||||||||
Sbjct: 97094 ctcgtgctggtggcgctgct 97113

>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 81      ggcccgcattgcgccgctcg 100
               ||||||||||||||||||||
Sbjct: 3759552 ggcccgcattgcgccgctcg 3759533

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
              complete sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 102    gctggtggcgctgctctccgtgct 125
              |||||||||||||||| |||||||
Sbjct: 559837 gctggtggcgctgctcgccgtgct 559814

>dbj|AP000492.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0705D01
          Length = 147174

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 97     ctcgtgctggtggcgctgct 116
              ||||||||||||||||||||
Sbjct: 136896 ctcgtgctggtggcgctgct 136915

>emb|AJ249181.1|ECH249181 Erwinia chrysanthemi sotB gene for sugar efflux transpoter
          Length = 2161

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 91   gcgccgctcgtgctggtggcgctg 114
            |||||||| |||||||||||||||
Sbjct: 1713 gcgccgctggtgctggtggcgctg 1736

>dbj|AK061191.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-F07, full
           insert sequence
          Length = 1346

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 102 gctggtggcgctgctctccgtgct 125
           |||||||||||||||| |||||||
Sbjct: 891 gctggtggcgctgctcgccgtgct 914

>emb|AL442118.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0201G08, complete
             sequence
          Length = 121821

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 102   gctggtggcgctgctctccgtgct 125
             |||||||||||||||| |||||||
Sbjct: 35205 gctggtggcgctgctcgccgtgct 35182

>gb|DQ013364.1| Rhodotorula glutinis phenylalanine ammonia lyase (PAL) mRNA, partial
            cds
          Length = 2188

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 126  ggccgcgccgtcgtcggcgt 145
            ||||||||||||||||||||
Sbjct: 1748 ggccgcgccgtcgtcggcgt 1767


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,073,147
Number of Sequences: 3902068
Number of extensions: 1073147
Number of successful extensions: 26643
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26274
Number of HSP's gapped (non-prelim): 369
length of query: 328
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 306
effective length of database: 17,147,199,772
effective search space: 5247043130232
effective search space used: 5247043130232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)