>NFIA_RAT (P09414) Nuclear factor 1 A-type (Nuclear factor 1/A) (NF1-A)|
           (NFI-A) (NF-I/A) (CCAAT-box-binding transcription
           factor) (CTF) (TGGCA-binding protein)
          Length = 509

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -3

Query: 435 KSTRSGN*SMKPSSIGALMAKSLKSTAHDRELLSQIRCRP-ATEPKVGFPAADVMARPGP 259
           KS +SG  S  PS   +L       T H R +++  R  P AT   + FP + ++ +PGP
Sbjct: 325 KSEKSGFSSPSPSQTSSL---GTAFTQHHRPVITGPRASPHATPSTLHFPTSPIIQQPGP 381

>NFIA_HUMAN (Q12857) Nuclear factor 1 A-type (Nuclear factor 1/A) (NF1-A)|
           (NFI-A) (NF-I/A) (CCAAT-box-binding transcription
           factor) (CTF) (TGGCA-binding protein)
          Length = 509

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -3

Query: 435 KSTRSGN*SMKPSSIGALMAKSLKSTAHDRELLSQIRCRP-ATEPKVGFPAADVMARPGP 259
           KS +SG  S  PS   +L       T H R +++  R  P AT   + FP + ++ +PGP
Sbjct: 325 KSEKSGFSSPSPSQTSSL---GTAFTQHHRPVITGPRASPHATPSTLHFPTSPIIQQPGP 381

>CH60_THET8 (Q5SLM2) 60 kDa chaperonin (Protein Cpn60) (groEL protein) (Heat|
           shock protein 60)
          Length = 542

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -3

Query: 375 KSLKSTAHDRELLSQIRCRPATEPKVGFPAADVMARPGPGDVFRVTRNSALE 220
           K+L     DR+ + ++    A +P+VG   AD M + G   +  V  + +LE
Sbjct: 130 KALAIPVEDRKAIEEVATISANDPEVGKLIADAMEKVGKEGIITVEESKSLE 181

>CH60_THET2 (P61490) 60 kDa chaperonin (Protein Cpn60) (groEL protein) (Heat|
           shock protein 60)
          Length = 542

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -3

Query: 375 KSLKSTAHDRELLSQIRCRPATEPKVGFPAADVMARPGPGDVFRVTRNSALE 220
           K+L     DR+ + ++    A +P+VG   AD M + G   +  V  + +LE
Sbjct: 130 KALAIPVEDRKAIEEVATISANDPEVGKLIADAMEKVGKEGIITVEESKSLE 181

>NFIA_MOUSE (Q02780) Nuclear factor 1 A-type (Nuclear factor 1/A) (NF1-A)|
           (NFI-A) (NF-I/A) (CCAAT-box-binding transcription
           factor) (CTF) (TGGCA-binding protein)
          Length = 532

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -3

Query: 435 KSTRSGN*SMKPSSIGALMAKSLKSTAHDRELLSQIRCRP-ATEPKVGFPAADVMARPGP 259
           KS +SG  S  PS   +L       T H R +++  R  P AT   + FP + ++ +PGP
Sbjct: 348 KSEKSGFSSPSPSQTSSL---GTAFTQHHRPVITGPRASPHATPSTLHFPTSPIIQQPGP 404

>NFIA_CHICK (P17923) Nuclear factor 1 A-type (Nuclear factor 1/A) (NF1-A)|
           (NFI-A) (NF-I/A) (CCAAT-box-binding transcription
           factor) (CTF) (TGGCA-binding protein)
          Length = 522

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -3

Query: 435 KSTRSGN*SMKPSSIGALMAKSLKSTAHDRELLSQIRCRP-ATEPKVGFPAADVMARPGP 259
           KS +SG  S  PS   +L       T H R +++  R  P AT   + FP + ++ +PGP
Sbjct: 338 KSEKSGFSSPSPSQTSSL---GTAFTQHHRPVITGPRASPHATPSTLHFPTSPIIQQPGP 394

>MAT1_COCKU (Q9Y8D3) Mating-type protein MAT-1|
          Length = 379

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = +1

Query: 109 SRPEPSRKISEPFVSYSPQPQHFPN---EGLYKAYLVIQRFKSRISSDPKNITRTWSGHD 279
           S P  +R + +P+ +++P P H PN   +GL   +L  Q    ++++   + T + S   
Sbjct: 276 SPPPMNRYMPDPYSTFAPTPNHSPNPFYDGL-TGFLSEQASIEQVNAATLHNTHSLSDSG 334

Query: 280 ICGRKSYL 303
           + G  SY+
Sbjct: 335 LSGDMSYM 342

>DNAJ_THEMA (Q9WZV3) Chaperone protein dnaJ|
          Length = 369

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
 Frame = +1

Query: 289 RKSYLGF--------RCGTTPDLAKKLTIMGG*FQ*FCHECADAGRLHRSVPRS 426
           R+S+ G+        RCG T  + ++          +CHEC  +GR+ R V R+
Sbjct: 186 RRSFFGYFVSERTCERCGGTGKIPRE----------YCHECGGSGRVLRKVRRT 229


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,731,826
Number of Sequences: 219361
Number of extensions: 1490156
Number of successful extensions: 4522
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4520
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)