ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet51a09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK072559.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132A10, full insert sequence Length = 1274 Score = 377 bits (190), Expect = e-101 Identities = 259/282 (91%) Strand = Plus / Plus Query: 101 atggcaacgctcaaggtcccctccaacgtccccgccctcgccgacgactgcgacaacctc 160 ||||| ||||||| ||||||||| |||||| || ||||||||||||||||| | ||| Sbjct: 96 atggcgacgctcaccgtcccctccgccgtcccgcccgtcgccgacgactgcgaccagctc 155 Query: 161 cgcaaggccttccaagggtggggcacgaacgaggcgctcatcatctccatcctgggccac 220 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 156 cgcaaggccttccaagggtggggcacgaacgaggcgctcatcatctccatcctggcccac 215 Query: 221 cgcgacgccgcgcagcgccgcgccatccgcaagcactacgccgacacctacggcgaggag 280 |||||||| |||||||| |||||||||||| ||||||||||||||||||||||||| Sbjct: 216 cgcgacgcggcgcagcggcgcgccatccgccgcgcctacgccgacacctacggcgaggag 275 Query: 281 ctgctccggagcatcaccgacgagatctcaggcgacttcgagagggccgtgatcctgtgg 340 || ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 276 ctcctccgcagcatcaccgacgagatctccggcgacttcgagagggccgtgatcctgtgg 335 Query: 341 acgctggaccccgcggagcgggacgcggtgctcgccaacgag 382 ||||||||||| |||||||| ||||||||||||||||||||| Sbjct: 336 acgctggacccggcggagcgcgacgcggtgctcgccaacgag 377
>emb|X98244.2|ZMANNP33 Z.mays mRNA for annexin p33 Length = 1277 Score = 307 bits (155), Expect = 1e-80 Identities = 253/283 (89%), Gaps = 2/283 (0%) Strand = Plus / Plus Query: 101 atggcaacgctcaaggtcccctccaacgtccccgccctcgccgacgactgcgacaacctc 160 |||||||||||||||||||| ||| || || || ||||||| ||||||||| | || Sbjct: 85 atggcaacgctcaaggtcccagccactgttcctcccgtcgccgatgactgcgaccagctg 144 Query: 161 cgcaaggccttccaagggtggggcacgaacgaggcgctcatcatctccatcctgggccac 220 ||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 145 cgcaaagcattccaagggtggggcacgaacgaggcgctcatcatctccatcctcggccac 204 Query: 221 cgcgacgccgcgcagcgccgcgccatccgcaagcac-tacgccgacacctacggcgagga 279 |||||||||||||||||||||||||||||| || | |||||||| ||||||||||||| Sbjct: 205 cgcgacgccgcgcagcgccgcgccatccgc-cgcgcttacgccgaggcctacggcgagga 263 Query: 280 gctgctccggagcatcaccgacgagatctcaggcgacttcgagagggccgtgatcctgtg 339 ||| ||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct: 264 gctcctccgctccatcacggacgagatctccggcgacttcgagagggccgtgatcctgtg 323 Query: 340 gacgctggaccccgcggagcgggacgcggtgctcgccaacgag 382 |||||||||||| |||||||| ||||||||||| ||||||||| Sbjct: 324 gacgctggacccagcggagcgcgacgcggtgctggccaacgag 366
>gb|AY105151.1| Zea mays PCO072293 mRNA sequence Length = 1369 Score = 307 bits (155), Expect = 1e-80 Identities = 253/283 (89%), Gaps = 2/283 (0%) Strand = Plus / Plus Query: 101 atggcaacgctcaaggtcccctccaacgtccccgccctcgccgacgactgcgacaacctc 160 |||||||||||||||||||| ||| || || || ||||||| ||||||||| | || Sbjct: 102 atggcaacgctcaaggtcccagccactgttcctcccgtcgccgatgactgcgaccagctg 161 Query: 161 cgcaaggccttccaagggtggggcacgaacgaggcgctcatcatctccatcctgggccac 220 ||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 162 cgcaaagcattccaagggtggggcacgaacgaggcgctcatcatctccatcctcggccac 221 Query: 221 cgcgacgccgcgcagcgccgcgccatccgcaagcac-tacgccgacacctacggcgagga 279 |||||||||||||||||||||||||||||| || | |||||||| ||||||||||||| Sbjct: 222 cgcgacgccgcgcagcgccgcgccatccgc-cgcgcttacgccgaggcctacggcgagga 280 Query: 280 gctgctccggagcatcaccgacgagatctcaggcgacttcgagagggccgtgatcctgtg 339 ||| ||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct: 281 gctcctccgctccatcacggacgagatctccggcgacttcgagagggccgtgatcctgtg 340 Query: 340 gacgctggaccccgcggagcgggacgcggtgctcgccaacgag 382 |||||||||||| |||||||| ||||||||||| ||||||||| Sbjct: 341 gacgctggacccagcggagcgcgacgcggtgctggccaacgag 383
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 208 bits (105), Expect = 1e-50 Identities = 138/149 (92%) Strand = Plus / Plus Query: 174 aagggtggggcacgaacgaggcgctcatcatctccatcctgggccaccgcgacgccgcgc 233 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct: 6261826 aagggtggggcacgaacgaggcgctcatcatctccatcctggcccaccgcgacgcggcgc 6261885 Query: 234 agcgccgcgccatccgcaagcactacgccgacacctacggcgaggagctgctccggagca 293 |||| |||||||||||| ||||||||||||||||||||||||||| ||||| |||| Sbjct: 6261886 agcggcgcgccatccgccgcgcctacgccgacacctacggcgaggagctcctccgcagca 6261945 Query: 294 tcaccgacgagatctcaggcgacttcgag 322 |||||||||||||||| |||||||||||| Sbjct: 6261946 tcaccgacgagatctccggcgacttcgag 6261974 Score = 107 bits (54), Expect = 3e-20 Identities = 60/62 (96%) Strand = Plus / Plus Query: 321 agagggccgtgatcctgtggacgctggaccccgcggagcgggacgcggtgctcgccaacg 380 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct: 6262084 agagggccgtgatcctgtggacgctggacccggcggagcgcgacgcggtgctcgccaacg 6262143 Query: 381 ag 382 || Sbjct: 6262144 ag 6262145 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 101 atggcaacgctcaaggtcccctccaacgtccccgccctcgccgacgactgcgacaacctc 160 ||||| ||||||| ||||||||| |||||| || ||||||||||||||||| | ||| Sbjct: 6261629 atggcgacgctcaccgtcccctccgccgtcccgcccgtcgccgacgactgcgaccagctc 6261688 Query: 161 cgcaaggccttccaagg 177 ||||||||||||||||| Sbjct: 6261689 cgcaaggccttccaagg 6261705
>dbj|AP004727.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0516A04 Length = 145107 Score = 208 bits (105), Expect = 1e-50 Identities = 138/149 (92%) Strand = Plus / Plus Query: 174 aagggtggggcacgaacgaggcgctcatcatctccatcctgggccaccgcgacgccgcgc 233 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct: 55902 aagggtggggcacgaacgaggcgctcatcatctccatcctggcccaccgcgacgcggcgc 55961 Query: 234 agcgccgcgccatccgcaagcactacgccgacacctacggcgaggagctgctccggagca 293 |||| |||||||||||| ||||||||||||||||||||||||||| ||||| |||| Sbjct: 55962 agcggcgcgccatccgccgcgcctacgccgacacctacggcgaggagctcctccgcagca 56021 Query: 294 tcaccgacgagatctcaggcgacttcgag 322 |||||||||||||||| |||||||||||| Sbjct: 56022 tcaccgacgagatctccggcgacttcgag 56050 Score = 107 bits (54), Expect = 3e-20 Identities = 60/62 (96%) Strand = Plus / Plus Query: 321 agagggccgtgatcctgtggacgctggaccccgcggagcgggacgcggtgctcgccaacg 380 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct: 56160 agagggccgtgatcctgtggacgctggacccggcggagcgcgacgcggtgctcgccaacg 56219 Query: 381 ag 382 || Sbjct: 56220 ag 56221 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 101 atggcaacgctcaaggtcccctccaacgtccccgccctcgccgacgactgcgacaacctc 160 ||||| ||||||| ||||||||| |||||| || ||||||||||||||||| | ||| Sbjct: 55705 atggcgacgctcaccgtcccctccgccgtcccgcccgtcgccgacgactgcgaccagctc 55764 Query: 161 cgcaaggccttccaagg 177 ||||||||||||||||| Sbjct: 55765 cgcaaggccttccaagg 55781
>ref|XM_467846.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1223 Score = 192 bits (97), Expect = 6e-46 Identities = 208/245 (84%) Strand = Plus / Plus Query: 138 tcgccgacgactgcgacaacctccgcaaggccttccaagggtggggcacgaacgaggcgc 197 ||||||| |||||||| | || |||||||| ||| |||||||||||||||||||| || Sbjct: 153 tcgccgaggactgcgagcagctgcgcaaggcgttcaaagggtggggcacgaacgagaagc 212 Query: 198 tcatcatctccatcctgggccaccgcgacgccgcgcagcgccgcgccatccgcaagcact 257 |||||||||||||||| | |||||||||||| ||||||||||| || |||||| || Sbjct: 213 tcatcatctccatcctcgcccaccgcgacgcggcgcagcgccgggcgatccgccgcgcct 272 Query: 258 acgccgacacctacggcgaggagctgctccggagcatcaccgacgagatctcaggcgact 317 ||||||| | |||||||||||||||||||| | ||| |||||||||| ||| | | Sbjct: 273 acgccgaggcgtacggcgaggagctgctccgcgccctcaacgacgagatccacggcaaat 332 Query: 318 tcgagagggccgtgatcctgtggacgctggaccccgcggagcgggacgcggtgctcgcca 377 |||||||||| ||||||| ||||||||||||||| |||||||||||||||||||| || | Sbjct: 333 tcgagagggcggtgatccagtggacgctggacccggcggagcgggacgcggtgctggcga 392 Query: 378 acgag 382 ||||| Sbjct: 393 acgag 397
>dbj|AK101787.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033065F07, full insert sequence Length = 1223 Score = 188 bits (95), Expect = 9e-45 Identities = 200/235 (85%) Strand = Plus / Plus Query: 138 tcgccgacgactgcgacaacctccgcaaggccttccaagggtggggcacgaacgaggcgc 197 ||||||| |||||||| | || |||||||| ||| |||||||||||||||||||| || Sbjct: 153 tcgccgaggactgcgagcagctgcgcaaggcgttcaaagggtggggcacgaacgagaagc 212 Query: 198 tcatcatctccatcctgggccaccgcgacgccgcgcagcgccgcgccatccgcaagcact 257 |||||||||||||||| | |||||||||||| ||||||||||| || |||||| || Sbjct: 213 tcatcatctccatcctcgcccaccgcgacgcggcgcagcgccgggcgatccgccgcgcct 272 Query: 258 acgccgacacctacggcgaggagctgctccggagcatcaccgacgagatctcaggcgact 317 ||||||| | |||||||||||||||||||| | ||| |||||||||| ||| | | Sbjct: 273 acgccgaggcgtacggcgaggagctgctccgcgccctcaacgacgagatccacggcaaat 332 Query: 318 tcgagagggccgtgatcctgtggacgctggaccccgcggagcgggacgcggtgct 372 |||||||||| ||||||| ||||||||||||||| |||||||||||||||||||| Sbjct: 333 tcgagagggcggtgatccagtggacgctggacccggcggagcgggacgcggtgct 387
>gb|AY105105.1| Zea mays PCO122403 mRNA sequence Length = 1401 Score = 167 bits (84), Expect = 3e-38 Identities = 213/256 (83%) Strand = Plus / Plus Query: 127 cgtccccgccctcgccgacgactgcgacaacctccgcaaggccttccaagggtggggcac 186 |||||| ||| ||||||| |||||||| | |||| |||||| ||| |||| |||||||| Sbjct: 252 cgtcccggccgtcgccgaggactgcgagcagctccacaaggctttcgaaggttggggcac 311 Query: 187 gaacgaggcgctcatcatctccatcctgggccaccgcgacgccgcgcagcgccgcgccat 246 |||||| ||| |||||||||||||||| ||||||| ||||||||||||||||||| || Sbjct: 312 caacgagaagctgatcatctccatcctggcccaccgcaacgccgcgcagcgccgcgcgat 371 Query: 247 ccgcaagcactacgccgacacctacggcgaggagctgctccggagcatcaccgacgagat 306 |||| ||||||||| | ||||| ||||||||||||| || ||||||||| Sbjct: 372 ccgccgcggctacgccgaggcgtacgggaaggagctgctccgcgctctcggcgacgagat 431 Query: 307 ctcaggcgacttcgagagggccgtgatcctgtggacgctggaccccgcggagcgggacgc 366 | ||| | ||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct: 432 ccacggcaagttcgagagggcggtgatcctgtggacgctggaccccgcggagagggacgc 491 Query: 367 ggtgctcgccaacgag 382 |||||| || |||||| Sbjct: 492 ggtgctggcgaacgag 507
>emb|X98245.1|ZMANNP35 Z.mays mRNA for annexin p35 Length = 1257 Score = 151 bits (76), Expect = 2e-33 Identities = 211/256 (82%) Strand = Plus / Plus Query: 127 cgtccccgccctcgccgacgactgcgacaacctccgcaaggccttccaagggtggggcac 186 |||||| ||| ||||||| |||||||| | |||| |||||||||| |||| |||||||| Sbjct: 158 cgtcccggccgtcgccgaggactgcgagcagctccacaaggccttcgaaggttggggcac 217 Query: 187 gaacgaggcgctcatcatctccatcctgggccaccgcgacgccgcgcagcgccgcgccat 246 |||||| || |||||||||||||||| ||||||| ||||||||||| |||||| || Sbjct: 218 caacgagaaactgatcatctccatcctggcccaccgcaacgccgcgcaggcccgcgcgat 277 Query: 247 ccgcaagcactacgccgacacctacggcgaggagctgctccggagcatcaccgacgagat 306 |||| ||| ||||| ||||||| ||||||||||||| || ||||||||| Sbjct: 278 ccgccgcggctatgccgaggcctacgggaaggagctgctccgcgctctcggcgacgagat 337 Query: 307 ctcaggcgacttcgagagggccgtgatcctgtggacgctggaccccgcggagcgggacgc 366 | ||| | ||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct: 338 ccacggcaagttcgagagggcggtgatcctgtggacgctggaccccgcggagagggacgc 397 Query: 367 ggtgctcgccaacgag 382 |||||| || |||||| Sbjct: 398 ggtgctggcgaacgag 413
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 107 bits (54), Expect = 3e-20 Identities = 99/114 (86%) Strand = Plus / Minus Query: 175 agggtggggcacgaacgaggcgctcatcatctccatcctgggccaccgcgacgccgcgca 234 ||||||||||||||||||| |||||||||||||||||| | |||||||||||| ||||| Sbjct: 31718644 agggtggggcacgaacgagaagctcatcatctccatcctcgcccaccgcgacgcggcgca 31718585 Query: 235 gcgccgcgccatccgcaagcactacgccgacacctacggcgaggagctgctccg 288 |||||| || |||||| ||||||||| | |||||||||||||||||||| Sbjct: 31718584 gcgccgggcgatccgccgcgcctacgccgaggcgtacggcgaggagctgctccg 31718531 Score = 83.8 bits (42), Expect = 4e-13 Identities = 57/62 (91%) Strand = Plus / Minus Query: 321 agagggccgtgatcctgtggacgctggaccccgcggagcgggacgcggtgctcgccaacg 380 ||||||| ||||||| ||||||||||||||| |||||||||||||||||||| || |||| Sbjct: 31718402 agagggcggtgatccagtggacgctggacccggcggagcgggacgcggtgctggcgaacg 31718343 Query: 381 ag 382 || Sbjct: 31718342 ag 31718341
>dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0627E03 Length = 159861 Score = 107 bits (54), Expect = 3e-20 Identities = 99/114 (86%) Strand = Plus / Minus Query: 175 agggtggggcacgaacgaggcgctcatcatctccatcctgggccaccgcgacgccgcgca 234 ||||||||||||||||||| |||||||||||||||||| | |||||||||||| ||||| Sbjct: 14442 agggtggggcacgaacgagaagctcatcatctccatcctcgcccaccgcgacgcggcgca 14383 Query: 235 gcgccgcgccatccgcaagcactacgccgacacctacggcgaggagctgctccg 288 |||||| || |||||| ||||||||| | |||||||||||||||||||| Sbjct: 14382 gcgccgggcgatccgccgcgcctacgccgaggcgtacggcgaggagctgctccg 14329 Score = 83.8 bits (42), Expect = 4e-13 Identities = 57/62 (91%) Strand = Plus / Minus Query: 321 agagggccgtgatcctgtggacgctggaccccgcggagcgggacgcggtgctcgccaacg 380 ||||||| ||||||| ||||||||||||||| |||||||||||||||||||| || |||| Sbjct: 14200 agagggcggtgatccagtggacgctggacccggcggagcgggacgcggtgctggcgaacg 14141 Query: 381 ag 382 || Sbjct: 14140 ag 14139
>dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1288_G09 Length = 109672 Score = 107 bits (54), Expect = 3e-20 Identities = 99/114 (86%) Strand = Plus / Minus Query: 175 agggtggggcacgaacgaggcgctcatcatctccatcctgggccaccgcgacgccgcgca 234 ||||||||||||||||||| |||||||||||||||||| | |||||||||||| ||||| Sbjct: 98431 agggtggggcacgaacgagaagctcatcatctccatcctcgcccaccgcgacgcggcgca 98372 Query: 235 gcgccgcgccatccgcaagcactacgccgacacctacggcgaggagctgctccg 288 |||||| || |||||| ||||||||| | |||||||||||||||||||| Sbjct: 98371 gcgccgggcgatccgccgcgcctacgccgaggcgtacggcgaggagctgctccg 98318 Score = 83.8 bits (42), Expect = 4e-13 Identities = 57/62 (91%) Strand = Plus / Minus Query: 321 agagggccgtgatcctgtggacgctggaccccgcggagcgggacgcggtgctcgccaacg 380 ||||||| ||||||| ||||||||||||||| |||||||||||||||||||| || |||| Sbjct: 98189 agagggcggtgatccagtggacgctggacccggcggagcgggacgcggtgctggcgaacg 98130 Query: 381 ag 382 || Sbjct: 98129 ag 98128
>gb|AC169375.4| Sorghum bicolor clone SB_BBc0020O07, complete sequence Length = 117931 Score = 99.6 bits (50), Expect = 6e-18 Identities = 59/62 (95%) Strand = Plus / Minus Query: 321 agagggccgtgatcctgtggacgctggaccccgcggagcgggacgcggtgctcgccaacg 380 ||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| Sbjct: 48489 agagggccgtgatcctgtggacgctggacccagcggagcgcgacgcggtgctggccaacg 48430 Query: 381 ag 382 || Sbjct: 48429 ag 48428 Score = 93.7 bits (47), Expect = 4e-16 Identities = 89/103 (86%) Strand = Plus / Minus Query: 220 ccgcgacgccgcgcagcgccgcgccatccgcaagcactacgccgacacctacggcgagga 279 ||||||||||||||||||||||||||||||| ||||||||| || |||||||||| Sbjct: 48695 ccgcgacgccgcgcagcgccgcgccatccgccgcgcctacgccgaggcccacggcgagga 48636 Query: 280 gctgctccggagcatcaccgacgagatctcaggcgacttcgag 322 ||| ||||| |||||| ||||||||||| |||||||||||| Sbjct: 48635 gctcctccgctccatcacggacgagatctccggcgacttcgag 48593
>gb|AF542967.1| Triticum aestivum annexin P35-like mRNA, partial sequence Length = 766 Score = 48.1 bits (24), Expect = 0.021 Identities = 27/28 (96%) Strand = Plus / Plus Query: 339 ggacgctggaccccgcggagcgggacgc 366 ||||||||||||| |||||||||||||| Sbjct: 5 ggacgctggacccggcggagcgggacgc 32
>ref|XM_365261.1| Magnaporthe grisea 70-15 predicted protein (MG01963.4) partial mRNA Length = 603 Score = 46.1 bits (23), Expect = 0.083 Identities = 23/23 (100%) Strand = Plus / Plus Query: 75 caccggcaggcaggcacccggtc 97 ||||||||||||||||||||||| Sbjct: 402 caccggcaggcaggcacccggtc 424
>emb|X05115.1|MINCND Neurospora crassa mitochondrial ND4L and ND5 genes for NADH dehydrogenase subunits Length = 7763 Score = 46.1 bits (23), Expect = 0.083 Identities = 23/23 (100%) Strand = Plus / Plus Query: 10 tccacccctcccttcccccgccc 32 ||||||||||||||||||||||| Sbjct: 5413 tccacccctcccttcccccgccc 5435
>emb|X14681.1|MTNCER3 Neurospora crassa mitochondrial DNA for new stopper mutant ER-3 recombined region Length = 839 Score = 46.1 bits (23), Expect = 0.083 Identities = 23/23 (100%) Strand = Plus / Plus Query: 10 tccacccctcccttcccccgccc 32 ||||||||||||||||||||||| Sbjct: 392 tccacccctcccttcccccgccc 414
>ref|NM_186003.1| Oryza sativa (japonica cultivar-group), mRNA Length = 912 Score = 44.1 bits (22), Expect = 0.33 Identities = 34/38 (89%) Strand = Plus / Plus Query: 330 tgatcctgtggacgctggaccccgcggagcgggacgcg 367 |||||||||||||| ||||||| || || ||||||||| Sbjct: 287 tgatcctgtggacgatggacccggcagaacgggacgcg 324
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Plus Query: 221 cgcgacgccgcgcagcgccgcgccat 246 |||| ||||||||||||||||||||| Sbjct: 2138425 cgcgtcgccgcgcagcgccgcgccat 2138450
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.33 Identities = 34/38 (89%) Strand = Plus / Minus Query: 330 tgatcctgtggacgctggaccccgcggagcgggacgcg 367 |||||||||||||| ||||||| || || ||||||||| Sbjct: 27748108 tgatcctgtggacgatggacccggcagaacgggacgcg 27748071
>gb|U75930.2|OPU75930 Orgyia pseudotsugata multicapsid nucleopolyhedrovirus, complete genome Length = 131995 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 222 gcgacgccgcgcagcgccgcgc 243 |||||||||||||||||||||| Sbjct: 41779 gcgacgccgcgcagcgccgcgc 41758
>dbj|BA000013.4| Mesorhizobium loti MAFF303099 pMLa DNA, cpmplete genome Length = 351911 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Plus Query: 206 tccatcctgggccaccgcgacgccgc 231 |||||||||| ||||||||||||||| Sbjct: 81669 tccatcctggtccaccgcgacgccgc 81694
>dbj|AP004378.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0496C02 Length = 148419 Score = 44.1 bits (22), Expect = 0.33 Identities = 34/38 (89%) Strand = Plus / Minus Query: 330 tgatcctgtggacgctggaccccgcggagcgggacgcg 367 |||||||||||||| ||||||| || || ||||||||| Sbjct: 40487 tgatcctgtggacgatggacccggcagaacgggacgcg 40450
>dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1477_F01 Length = 158792 Score = 44.1 bits (22), Expect = 0.33 Identities = 34/38 (89%) Strand = Plus / Minus Query: 330 tgatcctgtggacgctggaccccgcggagcgggacgcg 367 |||||||||||||| ||||||| || || ||||||||| Sbjct: 127210 tgatcctgtggacgatggacccggcagaacgggacgcg 127173
>gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence Length = 142376 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 226 cgccgcgcagcgccgcgccatccgc 250 |||||||| |||||||||||||||| Sbjct: 44848 cgccgcgccgcgccgcgccatccgc 44872
>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05 map C53961S, complete sequence Length = 175121 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 228 ccgcgcagcgccgcgccatcc 248 ||||||||||||||||||||| Sbjct: 40183 ccgcgcagcgccgcgccatcc 40203
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 221 cgcgacgccgcgcagcgccgc 241 ||||||||||||||||||||| Sbjct: 62205 cgcgacgccgcgcagcgccgc 62225
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 223 cgacgccgcgcagcgccgcgccatc 247 |||||||||||||| |||||||||| Sbjct: 978422 cgacgccgcgcagctccgcgccatc 978398
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 221 cgcgacgccgcgcagcgccgc 241 ||||||||||||||||||||| Sbjct: 446565 cgcgacgccgcgcagcgccgc 446545
>ref|NM_204293.1| Gallus gallus calcium channel, voltage-dependent, L type, alpha 1B subunit (CACNA1B), mRNA Length = 7966 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 211 cctgggccaccgcgacgccgc 231 ||||||||||||||||||||| Sbjct: 6904 cctgggccaccgcgacgccgc 6924
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 228 ccgcgcagcgccgcgccatcc 248 ||||||||||||||||||||| Sbjct: 11253825 ccgcgcagcgccgcgccatcc 11253845 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 124 caacgtccccgccctcgccgacga 147 ||||||||||||| |||||||||| Sbjct: 25744572 caacgtccccgccttcgccgacga 25744595
>gb|AF173015.1|AF173015 Gallus gallus N-type calcium channel alpha-1B cdB4 variant (CACHA1B) mRNA, complete cds Length = 7887 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 211 cctgggccaccgcgacgccgc 231 ||||||||||||||||||||| Sbjct: 6791 cctgggccaccgcgacgccgc 6811
>gb|AF173014.1|AF173014 Gallus gallus N-type calcium channel alpha-1B cdB3 variant (CACHA1B) mRNA, complete cds Length = 7892 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 211 cctgggccaccgcgacgccgc 231 ||||||||||||||||||||| Sbjct: 6796 cctgggccaccgcgacgccgc 6816
>gb|AF173013.1|AF173013 Gallus gallus N-type calcium channel alpha-1B cdB2 variant (CACHA1B) mRNA, complete cds Length = 7995 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 211 cctgggccaccgcgacgccgc 231 ||||||||||||||||||||| Sbjct: 6899 cctgggccaccgcgacgccgc 6919
>gb|AF173012.1|AF173012 Gallus gallus N-type calcium channel alpha-1B cdB1 variant (CACHA1B) mRNA, complete cds Length = 8000 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 211 cctgggccaccgcgacgccgc 231 ||||||||||||||||||||| Sbjct: 6904 cctgggccaccgcgacgccgc 6924
>gb|AF173017.1|AF173017 Gallus gallus N-type calcium channel alpha-1B cdB6 variant (CACHA1B) mRNA, complete cds Length = 7962 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 211 cctgggccaccgcgacgccgc 231 ||||||||||||||||||||| Sbjct: 6866 cctgggccaccgcgacgccgc 6886
>gb|AF173019.1|AF173019 Gallus gallus N-type calcium channel alpha-1B cdB8 variant (CACHA1B) mRNA, complete cds Length = 7920 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 211 cctgggccaccgcgacgccgc 231 ||||||||||||||||||||| Sbjct: 6824 cctgggccaccgcgacgccgc 6844
>gb|AF173018.1|AF173018 Gallus gallus N-type calcium channel alpha-1B cdB7 variant (CACHA1B) mRNA, complete cds Length = 7925 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 211 cctgggccaccgcgacgccgc 231 ||||||||||||||||||||| Sbjct: 6829 cctgggccaccgcgacgccgc 6849
>gb|AF173016.1|AF173016 Gallus gallus N-type calcium channel alpha-1B cdB5 variant (CACHA1B) mRNA, complete cds Length = 7967 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 211 cctgggccaccgcgacgccgc 231 ||||||||||||||||||||| Sbjct: 6871 cctgggccaccgcgacgccgc 6891
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 228 ccgcgcagcgccgcgccatcc 248 ||||||||||||||||||||| Sbjct: 11333014 ccgcgcagcgccgcgccatcc 11333034 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 124 caacgtccccgccctcgccgacga 147 ||||||||||||| |||||||||| Sbjct: 26063242 caacgtccccgccttcgccgacga 26063265
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 cgacgccgcgcagcgccgcg 242 |||||||||||||||||||| Sbjct: 398619 cgacgccgcgcagcgccgcg 398600
>ref|XM_322566.1| Neurospora crassa OR74A hypothetical protein (NCU00481.1) partial mRNA Length = 3249 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 gacctcgagatcccgcatcg 52 |||||||||||||||||||| Sbjct: 1938 gacctcgagatcccgcatcg 1919
>ref|XM_951073.1| Neurospora crassa OR74A hypothetical protein (NCU00481.1) partial mRNA Length = 3249 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 gacctcgagatcccgcatcg 52 |||||||||||||||||||| Sbjct: 1938 gacctcgagatcccgcatcg 1919
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 221 cgcgacgccgcgcagcgccgcgcc 244 |||| ||||||||||||||||||| Sbjct: 818197 cgcgtcgccgcgcagcgccgcgcc 818220
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 cgacgccgcgcagcgccgcgccat 246 ||||| |||||||||||||||||| Sbjct: 5093055 cgacggcgcgcagcgccgcgccat 5093078
>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29 Length = 277000 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 acgtccccgccctcgccgac 145 |||||||||||||||||||| Sbjct: 247057 acgtccccgccctcgccgac 247038
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 224 gacgccgcgcagcgccgcgccatc 247 ||||||||||||||||||| |||| Sbjct: 3102973 gacgccgcgcagcgccgcggcatc 3102950
>gb|AE005970.1| Caulobacter crescentus CB15 section 296 of 359 of the complete genome Length = 12680 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 241 cgccatccgcaagcactacgccga 264 |||||||||||||| ||||||||| Sbjct: 726 cgccatccgcaagctctacgccga 703
>gb|AC125783.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0039K08, complete sequence Length = 122163 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 124 caacgtccccgccctcgccgacga 147 ||||||||||||| |||||||||| Sbjct: 56915 caacgtccccgccttcgccgacga 56938
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 221 cgcgacgccgcgcagcgccgcgcc 244 |||| ||||||||||||||||||| Sbjct: 1711686 cgcgtcgccgcgcagcgccgcgcc 1711709
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 243 ccatccgcaagcactacgccgaca 266 |||||||||||| ||||||||||| Sbjct: 1898660 ccatccgcaagctctacgccgaca 1898683
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 cctccgcaaggccttccaag 176 |||||||||||||||||||| Sbjct: 986455 cctccgcaaggccttccaag 986474
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 cggcaccggcaggcaggcacccgg 95 |||||||||||||||||| ||||| Sbjct: 2741828 cggcaccggcaggcaggctcccgg 2741805
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 caccgcgacgccgcgcagcg 237 |||||||||||||||||||| Sbjct: 4897709 caccgcgacgccgcgcagcg 4897690
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 215 ggccaccgcgacgccgcgcagcgc 238 |||||||||| ||||||||||||| Sbjct: 4026499 ggccaccgcgccgccgcgcagcgc 4026476
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 atccgcaagcactacgccga 264 |||||||||||||||||||| Sbjct: 1732392 atccgcaagcactacgccga 1732411
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 224 gacgccgcgcagcgccgcgccatc 247 ||||||||||||||||||| |||| Sbjct: 3110199 gacgccgcgcagcgccgcggcatc 3110176
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 349 ccccgcggagcgggacgcggtgctcgcc 376 |||||||| |||||||||||||||||| Sbjct: 2157010 ccccgcggcccgggacgcggtgctcgcc 2156983 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,231,238 Number of Sequences: 3902068 Number of extensions: 2231238 Number of successful extensions: 57292 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54687 Number of HSP's gapped (non-prelim): 2592 length of query: 384 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 362 effective length of database: 17,147,199,772 effective search space: 6207286317464 effective search space used: 6207286317464 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
