ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet50h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DQ125487.1| Toxoplasma gondii structural maintenance of chrom... 40 1.5
2ref|XM_803340.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 1.5
3gb|AC159626.2| Mus musculus BAC clone RP24-209A23 from chromosom... 38 6.0
4emb|BX569690.1| Synechococcus sp. WH8102 complete genome; segmen... 38 6.0
5gb|AC026975.5| Homo sapiens chromosome 11, clone RP11-709C9, com... 38 6.0
6dbj|AP007163.1| Aspergillus oryzae RIB40 genomic DNA, SC166 38 6.0
7gb|AC103828.2| Homo sapiens chromosome 11, clone CTD1-2183M20, c... 38 6.0
8gb|AC108733.4| Homo sapiens 3 BAC RP11-789F5 (Roswell Park Cance... 38 6.0
9emb|AJ233827.1|RNO233827 Rattus norvegicus microsatellite sequen... 38 6.0
10emb|AL513467.1|NC17E5 Neurospora crassa DNA linkage group V Cosm... 38 6.0

>gb|DQ125487.1| Toxoplasma gondii structural maintenance of chromosome 4 (SMC4) gene,
             complete cds
          Length = 15840

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    cgagacgttgcagaacgaag 111
             ||||||||||||||||||||
Sbjct: 10191 cgagacgttgcagaacgaag 10210



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>ref|XM_803340.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053510635.40) partial mRNA
          Length = 825

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 105 aacgaagcaaaagcgaagag 124
           ||||||||||||||||||||
Sbjct: 803 aacgaagcaaaagcgaagag 822



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>gb|AC159626.2| Mus musculus BAC clone RP24-209A23 from chromosome 12, complete
             sequence
          Length = 157411

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 53    actgaaaatctgaagcaga 71
             |||||||||||||||||||
Sbjct: 56802 actgaaaatctgaagcaga 56820



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>emb|BX569690.1| Synechococcus sp. WH8102 complete genome; segment 2/7
          Length = 349652

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 40    ccgccaccggttcactgaa 58
             |||||||||||||||||||
Sbjct: 68705 ccgccaccggttcactgaa 68687



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>gb|AC026975.5| Homo sapiens chromosome 11, clone RP11-709C9, complete sequence
          Length = 200105

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 58    aaatctgaagcagatcagggcta 80
             |||||||||||| ||||||||||
Sbjct: 18644 aaatctgaagcaaatcagggcta 18666



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>dbj|AP007163.1| Aspergillus oryzae RIB40 genomic DNA, SC166
          Length = 338231

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 6     gttatcgtcgtttcctttatcca 28
             ||||||||||||||||| |||||
Sbjct: 90903 gttatcgtcgtttccttcatcca 90925



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>gb|AC103828.2| Homo sapiens chromosome 11, clone CTD1-2183M20, complete sequence
          Length = 136372

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 58   aaatctgaagcagatcagggcta 80
            |||||||||||| ||||||||||
Sbjct: 4264 aaatctgaagcaaatcagggcta 4242



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>gb|AC108733.4| Homo sapiens 3 BAC RP11-789F5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 171184

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 21     tttatccaactagcagtat 39
              |||||||||||||||||||
Sbjct: 106725 tttatccaactagcagtat 106707



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>emb|AJ233827.1|RNO233827 Rattus norvegicus microsatellite sequence clone 28A12
          Length = 352

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 55  tgaaaatctgaagcagatcaggg 77
           ||||||||||||||||| |||||
Sbjct: 296 tgaaaatctgaagcagaacaggg 318



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>emb|AL513467.1|NC17E5 Neurospora crassa DNA linkage group V Cosmid contig 17E5
          Length = 130049

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 5     tgttatcgtcgtttccttt 23
             |||||||||||||||||||
Sbjct: 57494 tgttatcgtcgtttccttt 57512


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 762,408
Number of Sequences: 3902068
Number of extensions: 762408
Number of successful extensions: 52038
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52024
Number of HSP's gapped (non-prelim): 14
length of query: 128
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 107
effective length of database: 17,151,101,840
effective search space: 1835167896880
effective search space used: 1835167896880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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