| Clone Name | baet50g06 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | PSBP_WHEAT (Q00434) Oxygen-evolving enhancer protein 2, chloropl... | 36 | 0.034 | 2 | RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine syntha... | 28 | 5.4 |
|---|
>PSBP_WHEAT (Q00434) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 258 Score = 35.8 bits (81), Expect = 0.034 Identities = 17/29 (58%), Positives = 17/29 (58%) Frame = +1 Query: 46 MASTSCFLHQSTXXXXXXXXXXXXVGRTQ 132 MASTSCFLHQST VGRTQ Sbjct: 1 MASTSCFLHQSTARLAASARPAPAVGRTQ 29
>RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 550 Score = 28.5 bits (62), Expect = 5.4 Identities = 12/17 (70%), Positives = 13/17 (76%) Frame = -1 Query: 106 GAPRQPGARWTGGGSRR 56 GAPR PG R GGG+RR Sbjct: 525 GAPRGPGGRPPGGGNRR 541 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,749,550 Number of Sequences: 219361 Number of extensions: 202451 Number of successful extensions: 704 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 681 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 704 length of database: 80,573,946 effective HSP length: 19 effective length of database: 76,406,087 effective search space used: 1833746088 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)