ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet50g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PSBP_WHEAT (Q00434) Oxygen-evolving enhancer protein 2, chloropl... 36 0.034
2RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine syntha... 28 5.4

>PSBP_WHEAT (Q00434) Oxygen-evolving enhancer protein 2, chloroplast precursor|
           (OEE2) (23 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid
           membrane protein)
          Length = 258

 Score = 35.8 bits (81), Expect = 0.034
 Identities = 17/29 (58%), Positives = 17/29 (58%)
 Frame = +1

Query: 46  MASTSCFLHQSTXXXXXXXXXXXXVGRTQ 132
           MASTSCFLHQST            VGRTQ
Sbjct: 1   MASTSCFLHQSTARLAASARPAPAVGRTQ 29



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>RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 550

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -1

Query: 106 GAPRQPGARWTGGGSRR 56
           GAPR PG R  GGG+RR
Sbjct: 525 GAPRGPGGRPPGGGNRR 541


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,749,550
Number of Sequences: 219361
Number of extensions: 202451
Number of successful extensions: 704
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 80,573,946
effective HSP length: 19
effective length of database: 76,406,087
effective search space used: 1833746088
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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