ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet50g01 |
|---|---|
| Clone Library Name | barley_pub |
>CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein)| Length = 262 Score = 40.0 bits (92), Expect = 0.002 Identities = 20/24 (83%), Positives = 22/24 (91%), Gaps = 1/24 (4%) Frame = +3 Query: 93 MEDERSTQSYQGAE-ADQVDVTDR 161 MEDERSTQSYQG E A+QV+VTDR Sbjct: 1 MEDERSTQSYQGGEAAEQVEVTDR 24
>SSB_XANAC (Q8PIJ2) Single-stranded DNA-binding protein (SSB)| (Helix-destabilizing protein) Length = 180 Score = 31.2 bits (69), Expect = 0.77 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = +2 Query: 134 GRSGGCDGQGPTRQPPRQEEGGGG 205 G GG G P R PRQ+ GGGG Sbjct: 114 GGGGGMGGDRPQRSAPRQQGGGGG 137
>SSB_XANCP (Q8P778) Single-stranded DNA-binding protein (SSB)| (Helix-destabilizing protein) Length = 172 Score = 30.8 bits (68), Expect = 1.0 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%) Frame = +2 Query: 125 GS*GRSGGCDGQGPTR-QPPRQEEGGGG 205 G G GG G P R Q PRQ++GGGG Sbjct: 112 GEGGGGGGMGGDRPQRTQAPRQQQGGGG 139
>PCX3_MOUSE (Q8VI59) Pecanex-like protein 3| Length = 1620 Score = 29.3 bits (64), Expect = 2.9 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Frame = +2 Query: 53 SSHESLAAPTDLDHGG*EEHPVIPG-S*GRSGGCDGQGPTRQPP 181 S+H LA PT + G E P+ PG S G G G R PP Sbjct: 1442 SNHPPLAHPTPENAAGSSEQPLPPGPSWGPRPSLSGSGDGRPPP 1485
>XG_HUMAN (P55808) Glycoprotein Xg precursor (Protein PBDX)| Length = 180 Score = 28.9 bits (63), Expect = 3.8 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 7/35 (20%) Frame = +2 Query: 122 PGS*GRSGGC-------DGQGPTRQPPRQEEGGGG 205 PG+ G SGG DG+ P R PR GGGG Sbjct: 77 PGNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGG 111
>ETBR2_HUMAN (O60883) Endothelin B receptor-like protein 2 precursor (ETBR-LP-2)| (G-protein coupled receptor 37-like 1) Length = 481 Score = 28.9 bits (63), Expect = 3.8 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +1 Query: 43 CFL*LPRVFSCTDRSRSWRMRGAPSHTRELR 135 C+ LP +F+ T + +WR+RG P E R Sbjct: 316 CYFCLPILFTVTCQLVTWRVRGPPGRKSECR 346
>ETBR2_RAT (Q9QYC5) Endothelin B receptor-like protein 2 precursor (ETBR-LP-2)| (G-protein coupled receptor 37-like 1) (G-protein coupled receptor CNS2) Length = 481 Score = 28.5 bits (62), Expect = 5.0 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +1 Query: 43 CFL*LPRVFSCTDRSRSWRMRGAPSHTRELR 135 C+ LP +F+ T + +WR+RG P E R Sbjct: 316 CYFCLPILFTVTCQLVTWRVRGPPGRKPECR 346
>ETBR2_MOUSE (Q99JG2) Endothelin B receptor-like protein 2 precursor (ETBR-LP-2)| (G-protein coupled receptor 37-like 1) Length = 481 Score = 28.5 bits (62), Expect = 5.0 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +1 Query: 43 CFL*LPRVFSCTDRSRSWRMRGAPSHTRELR 135 C+ LP +F+ T + +WR+RG P E R Sbjct: 316 CYFCLPILFTVTCQLVTWRVRGPPGRKPECR 346
>KLF13_MOUSE (Q9JJZ6) Krueppel-like factor 13 (Transcription factor BTEB3)| (Basic transcription element-binding protein 3) (BTE-binding protein 3) (RANTES factor of late activated T-lymphocytes 1) (RFLAT-1) (Erythroid transcription factor FKLF-2) Length = 289 Score = 28.1 bits (61), Expect = 6.5 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%) Frame = -2 Query: 183 RGGCRVGPCPSHPPDRPQ--LPGMTGCSSHPP 94 R CR+ P P PP P+ PG G + PP Sbjct: 92 RTPCRLPPAPPAPPPGPEPASPGQAGAPAAPP 123
>CUC3A_HAECO (P16253) Cuticle collagen 3A3| Length = 295 Score = 28.1 bits (61), Expect = 6.5 Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 1/31 (3%) Frame = -2 Query: 186 CRGGCRVGPC-PSHPPDRPQLPGMTGCSSHP 97 C CR GP P PP RP PG G P Sbjct: 91 CESCCRPGPPGPPGPPGRPGRPGRPGAPGLP 121
>SODE_MOUSE (O09164) Extracellular superoxide dismutase [Cu-Zn] precursor (EC| 1.15.1.1) (EC-SOD) Length = 251 Score = 28.1 bits (61), Expect = 6.5 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = -2 Query: 174 CRVGPCPSHPPDRPQLPGM 118 CRV P + PPD+PQ+ G+ Sbjct: 77 CRVQPSATLPPDQPQITGL 95
>KCNH4_RAT (Q9R1T9) Potassium voltage-gated channel subfamily H member 4| (Voltage-gated potassium channel subunit Kv12.3) (Ether-a-go-go-like potassium channel 1) (ELK channel 1) (rElk1) (Brain-specific eag-like channel 2) (BEC2) Length = 1017 Score = 27.7 bits (60), Expect = 8.6 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -2 Query: 171 RVGPCPSHPPDRPQLPGMTGCSSHPP 94 R+GP PSHPPD LP + PP Sbjct: 911 RLGP-PSHPPDSTWLPDLPCPHQRPP 935
>AMER1_HUMAN (Q9Y4X0) AMME syndrome candidate gene 1 protein| Length = 333 Score = 27.7 bits (60), Expect = 8.6 Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Frame = +2 Query: 50 SSSH---ESLAAPTDLDHGG*EEHPVIPGS*GRSGGCDGQGPTRQPPRQEEGGGG 205 SSSH ES +L GG + G G +GG G G T PP+ GGGG Sbjct: 29 SSSHCSGESQCRAGELGLGGAGTR--LNGLGGLTGGGSGSGCTLSPPQGCGGGGG 81
>DIAP2_MOUSE (O70566) Protein diaphanous homolog 2 (Diaphanous-related formin-2)| (DRF2) (mDia3) Length = 1098 Score = 27.7 bits (60), Expect = 8.6 Identities = 11/24 (45%), Positives = 12/24 (50%) Frame = -2 Query: 165 GPCPSHPPDRPQLPGMTGCSSHPP 94 GPCP PP P P + G PP Sbjct: 556 GPCPPPPPPPPPPPPLPGVVPPPP 579
>C1QA_PIG (Q69DL0) Complement C1q subcomponent subunit A precursor| Length = 247 Score = 27.7 bits (60), Expect = 8.6 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = -2 Query: 162 PCPSHPPDRPQLPGMTGCSSHP 97 P PS PP P LPG+ G +P Sbjct: 87 PGPSGPPGLPGLPGLKGIKGNP 108
>RDRP_IBDV (Q9Q6Q5) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein| VP1) Length = 881 Score = 27.7 bits (60), Expect = 8.6 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 6/34 (17%) Frame = -3 Query: 89 RDRSVQLK----TRGS*RKQRIS--KDYWFLACG 6 R+ S LK T+GS +K+ +S DYW+L+CG Sbjct: 283 RELSTLLKQGAGTKGSNKKKLLSMLSDYWYLSCG 316
>WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) (PRPL-2 protein) Length = 503 Score = 27.7 bits (60), Expect = 8.6 Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 6/45 (13%) Frame = -2 Query: 171 RVGPCPSHPPDRPQLPGMTGCSSHPP*SRSV------GAAKDSWE 55 R GP P PPDRP G PP S S+ +D WE Sbjct: 411 RSGPRPPLPPDRPS----AGAPPPPPPSTSIRNGFQDSPCEDEWE 451
>RDRP_IBDVA (P12918) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein| VP1) Length = 878 Score = 27.7 bits (60), Expect = 8.6 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 6/34 (17%) Frame = -3 Query: 89 RDRSVQLK----TRGS*RKQRIS--KDYWFLACG 6 R+ S LK T+GS +K+ +S DYW+L+CG Sbjct: 282 RELSALLKQGAGTKGSNKKKLLSMLSDYWYLSCG 315 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,679,745 Number of Sequences: 219361 Number of extensions: 563872 Number of successful extensions: 2176 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 1856 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2168 length of database: 80,573,946 effective HSP length: 44 effective length of database: 70,922,062 effective search space used: 1702129488 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
