ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet50f03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF498268.1| Haynaldia villosa clone kong28 mRNA Length = 1474 Score = 262 bits (132), Expect = 4e-67 Identities = 170/182 (93%), Gaps = 3/182 (1%) Strand = Plus / Minus Query: 47 agcatccatggcgtgcatcaataccttgcagagctgctccatgttcaagggggccaaggc 106 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 874 agcatccatggcgtgcatcaataccttgcagagctgctccatgttcaaaggggccaaggc 815 Query: 107 cgaggccagaaggggcagcagagccggcagcggcgggagcttcgggtgccgggcctccac 166 |||||||||||||||| |||| | ||| |||||||||||||||||||| ||||| Sbjct: 814 tgaggccagaaggggcaa---agccaccggcgcagggagcttcgggtgccgggcgtccac 758 Query: 167 gttcatggacgggagcgggctccggctcgggctcgacgagaaccccgacgccatcatctc 226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 757 gttcatggacgggagcgggctccggctcgggctcgacgagaaccccgacgccatcatctc 698 Query: 227 cg 228 || Sbjct: 697 cg 696
>gb|BC029142.1| Homo sapiens, clone IMAGE:5196881, mRNA Length = 1061 Score = 204 bits (103), Expect = 9e-50 Identities = 164/183 (89%), Gaps = 6/183 (3%) Strand = Plus / Plus Query: 46 tagcatccatggcgtgcatcaataccttgcagagctgctccatgttcaagggggccaagg 105 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 36 tagcatccatggcgtgcatcaataccttgcagagctgctccatgttcaaaggggccaaga 95 Query: 106 ccgaggccagaaggggcagcagagccggcagcggcgggagcttcgggtgccgggcctcca 165 |||||||||| || || |||| || ||||||| ||| | ||||||||| |||| Sbjct: 96 gtaaggccagaagaggtag---agcc---agtggcgggacctttgagtgccgggcgtcca 149 Query: 166 cgttcatggacgggagcgggctccggctcgggctcgacgagaaccccgacgccatcatct 225 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 150 cgttcatggacgggagcgggctccggctcgggctcgacgagaaccccgatgccatcatct 209 Query: 226 ccg 228 ||| Sbjct: 210 ccg 212
>ref|XM_507550.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.20-2 mRNA Length = 916 Score = 73.8 bits (37), Expect = 2e-10 Identities = 72/83 (86%), Gaps = 3/83 (3%) Strand = Plus / Plus Query: 146 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 205 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 143 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 199 Query: 206 gaaccccgacgccatcatctccg 228 |||||| || ||||||||||||| Sbjct: 200 gaaccctgaagccatcatctccg 222
>ref|XM_507549.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.20-2 mRNA Length = 1002 Score = 73.8 bits (37), Expect = 2e-10 Identities = 72/83 (86%), Gaps = 3/83 (3%) Strand = Plus / Plus Query: 146 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 205 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 143 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 199 Query: 206 gaaccccgacgccatcatctccg 228 |||||| || ||||||||||||| Sbjct: 200 gaaccctgaagccatcatctccg 222
>ref|XM_507051.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.20-2 mRNA Length = 956 Score = 73.8 bits (37), Expect = 2e-10 Identities = 72/83 (86%), Gaps = 3/83 (3%) Strand = Plus / Plus Query: 146 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 205 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 149 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 205 Query: 206 gaaccccgacgccatcatctccg 228 |||||| || ||||||||||||| Sbjct: 206 gaaccctgaagccatcatctccg 228
>ref|XM_468415.1| Oryza sativa (japonica cultivar-group), mRNA Length = 833 Score = 73.8 bits (37), Expect = 2e-10 Identities = 72/83 (86%), Gaps = 3/83 (3%) Strand = Plus / Plus Query: 146 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 205 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 135 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 191 Query: 206 gaaccccgacgccatcatctccg 228 |||||| || ||||||||||||| Sbjct: 192 gaaccctgaagccatcatctccg 214
>gb|AY346466.1| Oryza sativa (indica cultivar-group) brown planthopper-induced resistance protein 1 (Bi1) mRNA, complete cds Length = 1098 Score = 73.8 bits (37), Expect = 2e-10 Identities = 72/83 (86%), Gaps = 3/83 (3%) Strand = Plus / Plus Query: 146 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 205 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 401 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 457 Query: 206 gaaccccgacgccatcatctccg 228 |||||| || ||||||||||||| Sbjct: 458 gaaccctgaagccatcatctccg 480
>gb|AY346465.1| Oryza sativa (indica cultivar-group) putative brown planthopper susceptibility protein Hd002A mRNA, complete cds Length = 1265 Score = 73.8 bits (37), Expect = 2e-10 Identities = 72/83 (86%), Gaps = 3/83 (3%) Strand = Plus / Plus Query: 146 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 205 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 567 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 623 Query: 206 gaaccccgacgccatcatctccg 228 |||||| || ||||||||||||| Sbjct: 624 gaaccctgaagccatcatctccg 646
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 73.8 bits (37), Expect = 2e-10 Identities = 72/83 (86%), Gaps = 3/83 (3%) Strand = Plus / Plus Query: 146 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 205 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 35110983 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 35111039 Query: 206 gaaccccgacgccatcatctccg 228 |||||| || ||||||||||||| Sbjct: 35111040 gaaccctgaagccatcatctccg 35111062
>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1202_E07 Length = 145014 Score = 73.8 bits (37), Expect = 2e-10 Identities = 72/83 (86%), Gaps = 3/83 (3%) Strand = Plus / Plus Query: 146 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 205 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 6339 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 6395 Query: 206 gaaccccgacgccatcatctccg 228 |||||| || ||||||||||||| Sbjct: 6396 gaaccctgaagccatcatctccg 6418
>dbj|AP004028.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1136_C12 Length = 103973 Score = 73.8 bits (37), Expect = 2e-10 Identities = 72/83 (86%), Gaps = 3/83 (3%) Strand = Plus / Plus Query: 146 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 205 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 84146 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 84202 Query: 206 gaaccccgacgccatcatctccg 228 |||||| || ||||||||||||| Sbjct: 84203 gaaccctgaagccatcatctccg 84225
>dbj|AK104947.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-G08, full insert sequence Length = 833 Score = 73.8 bits (37), Expect = 2e-10 Identities = 72/83 (86%), Gaps = 3/83 (3%) Strand = Plus / Plus Query: 146 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 205 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 135 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 191 Query: 206 gaaccccgacgccatcatctccg 228 |||||| || ||||||||||||| Sbjct: 192 gaaccctgaagccatcatctccg 214
>dbj|AK104525.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H03, full insert sequence Length = 994 Score = 73.8 bits (37), Expect = 2e-10 Identities = 72/83 (86%), Gaps = 3/83 (3%) Strand = Plus / Plus Query: 146 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 205 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 135 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 191 Query: 206 gaaccccgacgccatcatctccg 228 |||||| || ||||||||||||| Sbjct: 192 gaaccctgaagccatcatctccg 214
>dbj|AK104684.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-B10, full insert sequence Length = 916 Score = 73.8 bits (37), Expect = 2e-10 Identities = 72/83 (86%), Gaps = 3/83 (3%) Strand = Plus / Plus Query: 146 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 205 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 143 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 199 Query: 206 gaaccccgacgccatcatctccg 228 |||||| || ||||||||||||| Sbjct: 200 gaaccctgaagccatcatctccg 222
>dbj|AK104103.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-B08, full insert sequence Length = 1002 Score = 73.8 bits (37), Expect = 2e-10 Identities = 72/83 (86%), Gaps = 3/83 (3%) Strand = Plus / Plus Query: 146 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 205 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 143 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 199 Query: 206 gaaccccgacgccatcatctccg 228 |||||| || ||||||||||||| Sbjct: 200 gaaccctgaagccatcatctccg 222
>dbj|AK071580.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106O04, full insert sequence Length = 1514 Score = 73.8 bits (37), Expect = 2e-10 Identities = 72/83 (86%), Gaps = 3/83 (3%) Strand = Plus / Plus Query: 146 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 205 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 136 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 192 Query: 206 gaaccccgacgccatcatctccg 228 |||||| || ||||||||||||| Sbjct: 193 gaaccctgaagccatcatctccg 215
>dbj|AK068163.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135B04, full insert sequence Length = 4217 Score = 73.8 bits (37), Expect = 2e-10 Identities = 72/83 (86%), Gaps = 3/83 (3%) Strand = Plus / Minus Query: 146 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 205 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 3207 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 3151 Query: 206 gaaccccgacgccatcatctccg 228 |||||| || ||||||||||||| Sbjct: 3150 gaaccctgaagccatcatctccg 3128
>dbj|AK065134.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P24, full insert sequence Length = 955 Score = 73.8 bits (37), Expect = 2e-10 Identities = 72/83 (86%), Gaps = 3/83 (3%) Strand = Plus / Plus Query: 146 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 205 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 148 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 204 Query: 206 gaaccccgacgccatcatctccg 228 |||||| || ||||||||||||| Sbjct: 205 gaaccctgaagccatcatctccg 227
>gb|AY112171.1| Zea mays CL11049_1 mRNA sequence Length = 803 Score = 50.1 bits (25), Expect = 0.003 Identities = 37/41 (90%) Strand = Plus / Plus Query: 186 ctccggctcgggctcgacgagaaccccgacgccatcatctc 226 |||||||||| ||| |||||||||||||| || |||||||| Sbjct: 82 ctccggctcgagctggacgagaaccccgaggcgatcatctc 122
>gb|AC116389.12| Mus musculus chromosome 7, clone RP23-21B1, complete sequence Length = 236139 Score = 46.1 bits (23), Expect = 0.048 Identities = 23/23 (100%) Strand = Plus / Minus Query: 65 caataccttgcagagctgctcca 87 ||||||||||||||||||||||| Sbjct: 100404 caataccttgcagagctgctcca 100382
>gb|AC102136.6| Mus musculus chromosome 3, clone RP23-269G19, complete sequence Length = 186659 Score = 42.1 bits (21), Expect = 0.75 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 gcgggctccggctcgggctcg 201 ||||||||||||||||||||| Sbjct: 12555 gcgggctccggctcgggctcg 12535
>gb|AC158583.3| Mus musculus chromosome 3, clone RP24-318B11, complete sequence Length = 168986 Score = 42.1 bits (21), Expect = 0.75 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 gcgggctccggctcgggctcg 201 ||||||||||||||||||||| Sbjct: 30479 gcgggctccggctcgggctcg 30459
>gb|AY519500.1| Gallus gallus CNR/Pcdh-alpha gene cluster, complete sequence Length = 187517 Score = 42.1 bits (21), Expect = 0.75 Identities = 27/29 (93%) Strand = Plus / Plus Query: 173 ggacgggagcgggctccggctcgggctcg 201 ||||||| |||||||| |||||||||||| Sbjct: 98299 ggacgggcgcgggctcgggctcgggctcg 98327 Score = 42.1 bits (21), Expect = 0.75 Identities = 27/29 (93%) Strand = Plus / Plus Query: 173 ggacgggagcgggctccggctcgggctcg 201 ||||||| |||||||| |||||||||||| Sbjct: 89238 ggacgggcgcgggctcgggctcgggctcg 89266 Score = 42.1 bits (21), Expect = 0.75 Identities = 27/29 (93%) Strand = Plus / Plus Query: 173 ggacgggagcgggctccggctcgggctcg 201 ||||||| |||||||| |||||||||||| Sbjct: 80055 ggacgggcgcgggctcgggctcgggctcg 80083 Score = 42.1 bits (21), Expect = 0.75 Identities = 27/29 (93%) Strand = Plus / Plus Query: 173 ggacgggagcgggctccggctcgggctcg 201 ||||||| |||||||| |||||||||||| Sbjct: 71030 ggacgggcgcgggctcgggctcgggctcg 71058 Score = 42.1 bits (21), Expect = 0.75 Identities = 27/29 (93%) Strand = Plus / Plus Query: 173 ggacgggagcgggctccggctcgggctcg 201 ||||||| |||||||| |||||||||||| Sbjct: 64607 ggacgggcgcgggctcgggctcgggctcg 64635 Score = 42.1 bits (21), Expect = 0.75 Identities = 27/29 (93%) Strand = Plus / Plus Query: 173 ggacgggagcgggctccggctcgggctcg 201 ||||||| |||||||| |||||||||||| Sbjct: 34905 ggacgggcgcgggctcgggctcgggctcg 34933
>gb|AF487888.1| Gallus gallus suppressor of fused mRNA, complete cds Length = 1455 Score = 42.1 bits (21), Expect = 0.75 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 gcgggctccggctcgggctcg 201 ||||||||||||||||||||| Sbjct: 43 gcgggctccggctcgggctcg 63
>gb|AC093881.2| Homo sapiens BAC clone RP11-655B23 from 4, complete sequence Length = 181245 Score = 42.1 bits (21), Expect = 0.75 Identities = 24/25 (96%) Strand = Plus / Plus Query: 136 gcggcgggagcttcgggtgccgggc 160 ||||||||||||| ||||||||||| Sbjct: 45056 gcggcgggagcttggggtgccgggc 45080
>ref|NG_004818.1| Gallus gallus cadherin-related neuronal receptor 10 pseudogene (CNRV10) Length = 98944 Score = 42.1 bits (21), Expect = 0.75 Identities = 27/29 (93%) Strand = Plus / Plus Query: 173 ggacgggagcgggctccggctcgggctcg 201 ||||||| |||||||| |||||||||||| Sbjct: 19840 ggacgggcgcgggctcgggctcgggctcg 19868 Score = 42.1 bits (21), Expect = 0.75 Identities = 27/29 (93%) Strand = Plus / Plus Query: 173 ggacgggagcgggctccggctcgggctcg 201 ||||||| |||||||| |||||||||||| Sbjct: 10779 ggacgggcgcgggctcgggctcgggctcg 10807 Score = 42.1 bits (21), Expect = 0.75 Identities = 27/29 (93%) Strand = Plus / Plus Query: 173 ggacgggagcgggctccggctcgggctcg 201 ||||||| |||||||| |||||||||||| Sbjct: 1596 ggacgggcgcgggctcgggctcgggctcg 1624
>ref|NM_204264.1| Gallus gallus suppressor of fused homolog (Drosophila) (SUFU), mRNA Length = 1455 Score = 42.1 bits (21), Expect = 0.75 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 gcgggctccggctcgggctcg 201 ||||||||||||||||||||| Sbjct: 43 gcgggctccggctcgggctcg 63
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 42.1 bits (21), Expect = 0.75 Identities = 24/25 (96%) Strand = Plus / Plus Query: 203 cgagaaccccgacgccatcatctcc 227 |||| |||||||||||||||||||| Sbjct: 439047 cgagcaccccgacgccatcatctcc 439071
>gb|U29204.1|HSU29204 Human mineralocorticoid receptor (hmr1a) gene, 5' untranslated region Length = 2105 Score = 42.1 bits (21), Expect = 0.75 Identities = 24/25 (96%) Strand = Plus / Minus Query: 136 gcggcgggagcttcgggtgccgggc 160 ||||||||||||| ||||||||||| Sbjct: 623 gcggcgggagcttggggtgccgggc 599
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 42.1 bits (21), Expect = 0.75 Identities = 24/25 (96%) Strand = Plus / Plus Query: 203 cgagaaccccgacgccatcatctcc 227 |||| |||||||||||||||||||| Sbjct: 87690 cgagcaccccgacgccatcatctcc 87714
>gb|U48393.1|HSU48393 Human mineralocorticoid receptor alpha (hMR) gene, promoter, exon 1 Length = 1771 Score = 42.1 bits (21), Expect = 0.75 Identities = 24/25 (96%) Strand = Plus / Minus Query: 136 gcggcgggagcttcgggtgccgggc 160 ||||||||||||| ||||||||||| Sbjct: 643 gcggcgggagcttggggtgccgggc 619
>emb|X97925.1|HSHMRPROM H.sapiens hMR gene, complete promoter region Length = 8661 Score = 42.1 bits (21), Expect = 0.75 Identities = 24/25 (96%) Strand = Plus / Minus Query: 136 gcggcgggagcttcgggtgccgggc 160 ||||||||||||| ||||||||||| Sbjct: 2216 gcggcgggagcttggggtgccgggc 2192
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 104 ggccgaggccagaaggggcagcag 127 ||||||||||||||||||| |||| Sbjct: 2788190 ggccgaggccagaaggggcggcag 2788213
>ref|XM_611254.2| PREDICTED: Bos taurus hypothetical LOC508098 (LOC508098), mRNA Length = 923 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cgggctccggctcgggctcg 201 |||||||||||||||||||| Sbjct: 665 cgggctccggctcgggctcg 646
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 176 cgggagcgggctccggctcgggct 199 ||||||| |||||||||||||||| Sbjct: 1839703 cgggagccggctccggctcgggct 1839680
>ref|NM_031392.2| Mus musculus WD repeat domain 6 (Wdr6), mRNA Length = 4169 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 caagggggccaaggccgaggccag 115 ||||||||||| |||||||||||| Sbjct: 2724 caagggggccagggccgaggccag 2701
>ref|XM_653577.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN1065.2), mRNA Length = 1290 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cgggctccggctcgggctcg 201 |||||||||||||||||||| Sbjct: 27 cgggctccggctcgggctcg 8
>gb|AC165327.4| Mus musculus chromosome 19, clone RP24-318N5, complete sequence Length = 191038 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 105 gccgaggccagaaggggcagcaga 128 ||||||||||||||||||| |||| Sbjct: 122869 gccgaggccagaaggggcatcaga 122846
>ref|NM_015278.3| Homo sapiens SAM and SH3 domain containing 1 (SASH1), mRNA Length = 7709 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cgggctccggctcgggctcg 201 |||||||||||||||||||| Sbjct: 539 cgggctccggctcgggctcg 520
>gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0038B22, complete sequence Length = 177557 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 200 cgacgagaaccccgacgccatcatctcc 227 ||||||||||| ||| |||||||||||| Sbjct: 77071 cgacgagaacctcgaggccatcatctcc 77098
>ref|XM_850346.1| PREDICTED: Canis familiaris similar to eukaryotic translation initiation factor 3, subunit 3 gamma, 40kDa (LOC612613), mRNA Length = 998 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 agaaggggcagcagagccgg 133 |||||||||||||||||||| Sbjct: 42 agaaggggcagcagagccgg 23
>gb|BC035951.1| Mus musculus WD repeat domain 6, mRNA (cDNA clone IMAGE:4506719), complete cds Length = 2083 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 caagggggccaaggccgaggccag 115 ||||||||||| |||||||||||| Sbjct: 703 caagggggccagggccgaggccag 680
>gb|AC161413.5| Mus musculus chromosome 19, clone RP23-106D17, complete sequence Length = 215356 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 gccgaggccagaaggggcagcaga 128 ||||||||||||||||||| |||| Sbjct: 214947 gccgaggccagaaggggcatcaga 214970
>gb|BC053993.1| Mus musculus cDNA clone IMAGE:6314898, **** WARNING: chimeric clone **** Length = 6454 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 caagggggccaaggccgaggccag 115 ||||||||||| |||||||||||| Sbjct: 5037 caagggggccagggccgaggccag 5014
>gb|AY351960.1|AY351960S01 Homo sapiens PEPE1 gene, exon 1 Length = 677 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cgggctccggctcgggctcg 201 |||||||||||||||||||| Sbjct: 539 cgggctccggctcgggctcg 520
>emb|AL513164.13| Human DNA sequence from clone RP11-400P17 on chromosome 6 Contains the 5' part of a novel gene, the 5' part of the gene for KIAA0790 protein (KIAA0790) and a CpG island, complete sequence Length = 154288 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cgggctccggctcgggctcg 201 |||||||||||||||||||| Sbjct: 97968 cgggctccggctcgggctcg 97949
>ref|XM_964282.1| PREDICTED: Tribolium castaneum similar to CG8639-PA (LOC657847), mRNA Length = 3999 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 132 ggcagcggcgggagcttcgggtgc 155 |||||||||||| ||||||||||| Sbjct: 3494 ggcagcggcgggtgcttcgggtgc 3471
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 176 cgggagcgggctccggctcgggctcgac 203 ||||||||||||||||||| || ||||| Sbjct: 938406 cgggagcgggctccggctccggttcgac 938379
>emb|BX640421.1| Bordetella pertussis strain Tohama I, complete genome; segment 11/12 Length = 349726 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 cgggctccggctcgggctcg 201 |||||||||||||||||||| Sbjct: 88969 cgggctccggctcgggctcg 88988
>gb|BC054367.1| Mus musculus WD repeat domain 6, mRNA (cDNA clone MGC:62549 IMAGE:5346943), complete cds Length = 4104 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 caagggggccaaggccgaggccag 115 ||||||||||| |||||||||||| Sbjct: 2652 caagggggccagggccgaggccag 2629
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 aagggggccaaggccgaggc 112 |||||||||||||||||||| Sbjct: 2353174 aagggggccaaggccgaggc 2353155
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cgggctccggctcgggctcg 201 |||||||||||||||||||| Sbjct: 2449373 cgggctccggctcgggctcg 2449354
>dbj|AK146617.1| Mus musculus 17 days embryo stomach cDNA, RIKEN full-length enriched library, clone:I920035B07 product:WD repeat domain 6, full insert sequence Length = 4044 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 caagggggccaaggccgaggccag 115 ||||||||||| |||||||||||| Sbjct: 2681 caagggggccagggccgaggccag 2658
>dbj|AK166265.1| Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length enriched library, clone:G830027A05 product:WD repeat domain 6, full insert sequence Length = 4066 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 caagggggccaaggccgaggccag 115 ||||||||||| |||||||||||| Sbjct: 2702 caagggggccagggccgaggccag 2679
>dbj|AK163752.1| Mus musculus adult male corpus striatum cDNA, RIKEN full-length enriched library, clone:C030011J15 product:WD repeat domain 6, full insert sequence Length = 4019 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 caagggggccaaggccgaggccag 115 ||||||||||| |||||||||||| Sbjct: 2657 caagggggccagggccgaggccag 2634
>dbj|AK169357.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:I920192C19 product:WD repeat domain 6, full insert sequence Length = 4088 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 caagggggccaaggccgaggccag 115 ||||||||||| |||||||||||| Sbjct: 2725 caagggggccagggccgaggccag 2702
>dbj|AK165935.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730021L06 product:WD repeat domain 6, full insert sequence Length = 4059 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 caagggggccaaggccgaggccag 115 ||||||||||| |||||||||||| Sbjct: 2688 caagggggccagggccgaggccag 2665
>dbj|AK052235.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched library, clone:D330012A03 product:WD REPEAT PROTEIN WDR6 homolog [Mus musculus], full insert sequence Length = 4035 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 caagggggccaaggccgaggccag 115 ||||||||||| |||||||||||| Sbjct: 2665 caagggggccagggccgaggccag 2642
>dbj|AK046119.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230342P20 product:WD repeat domain 6, full insert sequence Length = 4056 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 caagggggccaaggccgaggccag 115 ||||||||||| |||||||||||| Sbjct: 2692 caagggggccagggccgaggccag 2669
>dbj|AK079258.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530062C16 product:GABA-A RECEPTOR EPSILON-LIKE SUBUNIT homolog [Mus musculus], full insert sequence Length = 1939 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cgggctccggctcgggctcg 201 |||||||||||||||||||| Sbjct: 1356 cgggctccggctcgggctcg 1337
>dbj|AK037181.1| Mus musculus 6 days neonate skin cDNA, RIKEN full-length enriched library, clone:A030006O19 product:WD repeat domain 6, full insert sequence Length = 4063 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 caagggggccaaggccgaggccag 115 ||||||||||| |||||||||||| Sbjct: 2701 caagggggccagggccgaggccag 2678
>gb|AF348591.1|AF348591 Mus musculus WD repeat protein WDR6 mRNA, complete cds Length = 4107 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 caagggggccaaggccgaggccag 115 ||||||||||| |||||||||||| Sbjct: 2720 caagggggccagggccgaggccag 2697
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 200 cgacgagaaccccgacgccatcatctcc 227 ||||||||||| ||| |||||||||||| Sbjct: 19900004 cgacgagaacctcgaggccatcatctcc 19900031
>dbj|AK205565.1| Mus musculus cDNA, clone:Y2G0102B21, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000035223, based on BLAT search Length = 137 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 caagggggccaaggccgaggccag 115 ||||||||||| |||||||||||| Sbjct: 106 caagggggccagggccgaggccag 83
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 182 cgggctccggctcgggctcgacga 205 |||||||||| ||||||||||||| Sbjct: 8133044 cgggctccggatcgggctcgacga 8133021
>dbj|AK025495.1| Homo sapiens cDNA: FLJ21842 fis, clone HEP01849 Length = 4744 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cgggctccggctcgggctcg 201 |||||||||||||||||||| Sbjct: 539 cgggctccggctcgggctcg 520
>emb|AJ335985.1|HSA335985 Homo sapiens genomic sequence surrounding NotI site, clone NR1-NC8RS Length = 706 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cgggctccggctcgggctcg 201 |||||||||||||||||||| Sbjct: 282 cgggctccggctcgggctcg 263
>emb|AJ335962.1|HSA335962 Homo sapiens genomic sequence surrounding NotI site, clone NR1-0F24RS Length = 773 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cgggctccggctcgggctcg 201 |||||||||||||||||||| Sbjct: 282 cgggctccggctcgggctcg 263
>emb|AJ328720.1|HSA328720 Homo sapiens genomic sequence surrounding NotI site, clone NR1-NJ6R Length = 683 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cgggctccggctcgggctcg 201 |||||||||||||||||||| Sbjct: 282 cgggctccggctcgggctcg 263
>gb|BC050894.1| Mus musculus WD repeat domain 6, mRNA (cDNA clone MGC:63325 IMAGE:5708880), complete cds Length = 4169 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 caagggggccaaggccgaggccag 115 ||||||||||| |||||||||||| Sbjct: 2724 caagggggccagggccgaggccag 2701
>dbj|AK063232.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-112-F06, full insert sequence Length = 751 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 200 cgacgagaaccccgacgccatcatctcc 227 ||||||||||| ||| |||||||||||| Sbjct: 87 cgacgagaacctcgaggccatcatctcc 114
>tpe|BN000088.1|HSA000088 TPA: TPA_exp: Homo sapiens mRNA for putative adapter and scaffold protein (SASH1 gene) Length = 7709 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cgggctccggctcgggctcg 201 |||||||||||||||||||| Sbjct: 539 cgggctccggctcgggctcg 520
>emb|AL162831.6|CNS01RI2 Human chromosome 14 DNA sequence BAC R-1077A2 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 208102 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cgggctccggctcgggctcg 201 |||||||||||||||||||| Sbjct: 150766 cgggctccggctcgggctcg 150747
>emb|AL161757.4|CNS01RHK Human chromosome 14 DNA sequence BAC R-1085N6 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 242832 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cgggctccggctcgggctcg 201 |||||||||||||||||||| Sbjct: 53543 cgggctccggctcgggctcg 53524
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 200 cgacgagaaccccgacgccatcatctcc 227 ||||||||||| ||| |||||||||||| Sbjct: 20184983 cgacgagaacctcgaggccatcatctcc 20185010
>emb|AJ507735.1|HSA507735 Homo sapiens mRNA for putative adapter and scaffold protein (SASH1 gene) Length = 7240 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cgggctccggctcgggctcg 201 |||||||||||||||||||| Sbjct: 70 cgggctccggctcgggctcg 51
>emb|AL807816.7| Mouse DNA sequence from clone RP23-13H12 on chromosome X, complete sequence Length = 193219 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 cgggctccggctcgggctcg 201 |||||||||||||||||||| Sbjct: 36579 cgggctccggctcgggctcg 36598
>dbj|AB018333.1| Homo sapiens mRNA for KIAA0790 protein, partial cds Length = 4469 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cgggctccggctcgggctcg 201 |||||||||||||||||||| Sbjct: 282 cgggctccggctcgggctcg 263
>dbj|AB041854.1| Mus musculus wdp122 mRNA for WD-repeat protein p122, complete cds Length = 4156 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 caagggggccaaggccgaggccag 115 ||||||||||| |||||||||||| Sbjct: 2790 caagggggccagggccgaggccag 2767 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,743,783 Number of Sequences: 3902068 Number of extensions: 1743783 Number of successful extensions: 40504 Number of sequences better than 10.0: 79 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39960 Number of HSP's gapped (non-prelim): 528 length of query: 230 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 208 effective length of database: 17,147,199,772 effective search space: 3566617552576 effective search space used: 3566617552576 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
