ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet50f01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190019.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 846 Score = 85.7 bits (43), Expect = 5e-14 Identities = 88/103 (85%) Strand = Plus / Plus Query: 7 ggtggagcctcgccggcgcaacggcgctggtcaccggcggcagcagaggaattgggcacg 66 ||||||||||||||||| |||||||| ||||||||||||| || ||| || |||| || Sbjct: 38 ggtggagcctcgccggcaagacggcgctcgtcaccggcggcaccaaaggcatcgggcgcg 97 Query: 67 caatcgtggaggagctcgtcgggctgggggcgcgggtgcacac 109 | |||||||||||||||| |||| | |||| | |||||||||| Sbjct: 98 cgatcgtggaggagctcgccgggttcggggtgagggtgcacac 140
>dbj|AK063434.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-E03, full insert sequence Length = 1916 Score = 83.8 bits (42), Expect = 2e-13 Identities = 93/110 (84%) Strand = Plus / Plus Query: 4 agaggtggagcctcgccggcgcaacggcgctggtcaccggcggcagcagaggaattgggc 63 |||||||||||||||||||||| || ||||| |||||||||||||||| ||| || || | Sbjct: 86 agaggtggagcctcgccggcgccaccgcgctcgtcaccggcggcagcaaaggcatcggcc 145 Query: 64 acgcaatcgtggaggagctcgtcgggctgggggcgcgggtgcacacctgc 113 ||| ||||| |||||||||| | | |||| ||| ||||||||||||| Sbjct: 146 gcgccatcgtcgaggagctcgccagcttgggcgcgacggtgcacacctgc 195
>ref|NM_190020.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 834 Score = 77.8 bits (39), Expect = 1e-11 Identities = 87/103 (84%) Strand = Plus / Plus Query: 7 ggtggagcctcgccggcgcaacggcgctggtcaccggcggcagcagaggaattgggcacg 66 ||||||||||||||||| |||||||| ||||||||||||| || || || |||| || Sbjct: 26 ggtggagcctcgccggcaagacggcgctcgtcaccggcggcaccaagggcatcgggcgcg 85 Query: 67 caatcgtggaggagctcgtcgggctgggggcgcgggtgcacac 109 | |||||||||||||||| |||| | |||| | |||||||||| Sbjct: 86 cgatcgtggaggagctcgccgggttcggggtgagggtgcacac 128
>ref|XM_471478.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 528 Score = 75.8 bits (38), Expect = 5e-11 Identities = 65/74 (87%) Strand = Plus / Plus Query: 7 ggtggagcctcgccggcgcaacggcgctggtcaccggcggcagcagaggaattgggcacg 66 ||||||||||||||||||| || || || |||||||||||||||| |||||| |||| | Sbjct: 35 ggtggagcctcgccggcgccacagctctcgtcaccggcggcagcaaaggaatcgggcgag 94 Query: 67 caatcgtggaggag 80 | |||||||||||| Sbjct: 95 ccatcgtggaggag 108
>gb|AC145775.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0313E01, complete sequence Length = 149215 Score = 75.8 bits (38), Expect = 5e-11 Identities = 77/90 (85%) Strand = Plus / Minus Query: 72 gtggaggagctcgtcgggctgggggcgcgggtgcacacctgctccgagaacgccgtggag 131 ||||||||||||| ||| | |||||||| |||||||| ||| || |||||| | |||| Sbjct: 65975 gtggaggagctcgccggattcggggcgcgcgtgcacacgtgcgcccggaacgcggcggag 65916 Query: 132 ctggaggcgtgccgtcggcggtgggaggag 161 ||||||||| |||| ||||||||||||||| Sbjct: 65915 ctggaggcgagccggcggcggtgggaggag 65886 Score = 65.9 bits (33), Expect = 5e-08 Identities = 42/45 (93%) Strand = Plus / Minus Query: 7 ggtggagcctcgccggcgcaacggcgctggtcaccggcggcagca 51 |||||| |||||||||||| |||||||| |||||||||||||||| Sbjct: 66113 ggtggaccctcgccggcgcgacggcgctcgtcaccggcggcagca 66069
>gb|AC129224.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0029P13, complete sequence Length = 158506 Score = 75.8 bits (38), Expect = 5e-11 Identities = 77/90 (85%) Strand = Plus / Minus Query: 72 gtggaggagctcgtcgggctgggggcgcgggtgcacacctgctccgagaacgccgtggag 131 ||||||||||||| ||| | |||||||| |||||||| ||| || |||||| | |||| Sbjct: 28877 gtggaggagctcgccggattcggggcgcgcgtgcacacgtgcgcccggaacgcggcggag 28818 Query: 132 ctggaggcgtgccgtcggcggtgggaggag 161 ||||||||| |||| ||||||||||||||| Sbjct: 28817 ctggaggcgagccggcggcggtgggaggag 28788 Score = 65.9 bits (33), Expect = 5e-08 Identities = 42/45 (93%) Strand = Plus / Minus Query: 7 ggtggagcctcgccggcgcaacggcgctggtcaccggcggcagca 51 |||||| |||||||||||| |||||||| |||||||||||||||| Sbjct: 29021 ggtggaccctcgccggcgcgacggcgctcgtcaccggcggcagca 28977
>gb|AC129225.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0051D10, complete sequence Length = 140272 Score = 75.8 bits (38), Expect = 5e-11 Identities = 77/90 (85%) Strand = Plus / Plus Query: 72 gtggaggagctcgtcgggctgggggcgcgggtgcacacctgctccgagaacgccgtggag 131 ||||||||||||| ||| | |||||||| |||||||| ||| || |||||| | |||| Sbjct: 43878 gtggaggagctcgccggattcggggcgcgcgtgcacacgtgcgcccggaacgcggcggag 43937 Query: 132 ctggaggcgtgccgtcggcggtgggaggag 161 ||||||||| |||| ||||||||||||||| Sbjct: 43938 ctggaggcgagccggcggcggtgggaggag 43967 Score = 65.9 bits (33), Expect = 5e-08 Identities = 42/45 (93%) Strand = Plus / Plus Query: 7 ggtggagcctcgccggcgcaacggcgctggtcaccggcggcagca 51 |||||| |||||||||||| |||||||| |||||||||||||||| Sbjct: 43734 ggtggaccctcgccggcgcgacggcgctcgtcaccggcggcagca 43778
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 75.8 bits (38), Expect = 5e-11 Identities = 77/90 (85%) Strand = Plus / Minus Query: 72 gtggaggagctcgtcgggctgggggcgcgggtgcacacctgctccgagaacgccgtggag 131 ||||||||||||| ||| | |||||||| |||||||| ||| || |||||| | |||| Sbjct: 25301864 gtggaggagctcgccggattcggggcgcgcgtgcacacgtgcgcccggaacgcggcggag 25301805 Query: 132 ctggaggcgtgccgtcggcggtgggaggag 161 ||||||||| |||| ||||||||||||||| Sbjct: 25301804 ctggaggcgagccggcggcggtgggaggag 25301775 Score = 75.8 bits (38), Expect = 5e-11 Identities = 77/90 (85%) Strand = Plus / Minus Query: 72 gtggaggagctcgtcgggctgggggcgcgggtgcacacctgctccgagaacgccgtggag 131 ||||||||||||| ||| | |||||||| |||||||| ||| || |||||| | |||| Sbjct: 25190705 gtggaggagctcgccggattcggggcgcgcgtgcacacgtgcgcccggaacgcggcggag 25190646 Query: 132 ctggaggcgtgccgtcggcggtgggaggag 161 ||||||||| |||| ||||||||||||||| Sbjct: 25190645 ctggaggcgagccggcggcggtgggaggag 25190616 Score = 71.9 bits (36), Expect = 8e-10 Identities = 45/48 (93%) Strand = Plus / Plus Query: 4 agaggtggagcctcgccggcgcaacggcgctggtcaccggcggcagca 51 |||||||||||||||||||||| || ||||| |||||||||||||||| Sbjct: 13752752 agaggtggagcctcgccggcgccaccgcgctcgtcaccggcggcagca 13752799 Score = 65.9 bits (33), Expect = 5e-08 Identities = 42/45 (93%) Strand = Plus / Minus Query: 7 ggtggagcctcgccggcgcaacggcgctggtcaccggcggcagca 51 |||||| |||||||||||| |||||||| |||||||||||||||| Sbjct: 25302008 ggtggaccctcgccggcgcgacggcgctcgtcaccggcggcagca 25301964 Score = 65.9 bits (33), Expect = 5e-08 Identities = 42/45 (93%) Strand = Plus / Minus Query: 7 ggtggagcctcgccggcgcaacggcgctggtcaccggcggcagca 51 |||||| |||||||||||| |||||||| |||||||||||||||| Sbjct: 25190843 ggtggaccctcgccggcgcgacggcgctcgtcaccggcggcagca 25190799 Score = 56.0 bits (28), Expect = 5e-05 Identities = 43/48 (89%) Strand = Plus / Plus Query: 4 agaggtggagcctcgccggcgcaacggcgctggtcaccggcggcagca 51 ||||||||| |||||||||||| || ||||| ||||||||| |||||| Sbjct: 13725140 agaggtggatcctcgccggcgccaccgcgctagtcaccggccgcagca 13725187 Score = 52.0 bits (26), Expect = 8e-04 Identities = 41/46 (89%) Strand = Plus / Plus Query: 6 aggtggagcctcgccggcgcaacggcgctggtcaccggcggcagca 51 ||||||||||| |||||||| || ||||| ||||||||||| |||| Sbjct: 13790376 aggtggagccttgccggcgccaccgcgctcgtcaccggcggtagca 13790421 Score = 48.1 bits (24), Expect = 0.012 Identities = 36/40 (90%) Strand = Plus / Plus Query: 12 agcctcgccggcgcaacggcgctggtcaccggcggcagca 51 ||||||||||| || |||||||| |||||||| ||||||| Sbjct: 14082897 agcctcgccggtgccacggcgcttgtcaccggtggcagca 14082936
>dbj|AK073524.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046I10, full insert sequence Length = 1143 Score = 75.8 bits (38), Expect = 5e-11 Identities = 92/110 (83%) Strand = Plus / Plus Query: 4 agaggtggagcctcgccggcgcaacggcgctggtcaccggcggcagcagaggaattgggc 63 |||||||||||||||||||||| || ||||| |||||||||||||||| ||| || || | Sbjct: 87 agaggtggagcctcgccggcgccaccgcgctcgtcaccggcggcagcaaaggcatcggcc 146 Query: 64 acgcaatcgtggaggagctcgtcgggctgggggcgcgggtgcacacctgc 113 ||| |||| |||||||||| | | |||| ||| ||||||||||||| Sbjct: 147 gcgccgtcgtcgaggagctcgccagcttgggcgcgacggtgcacacctgc 196
>dbj|AK073048.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033007C03, full insert sequence Length = 3157 Score = 75.8 bits (38), Expect = 5e-11 Identities = 92/110 (83%) Strand = Plus / Plus Query: 4 agaggtggagcctcgccggcgcaacggcgctggtcaccggcggcagcagaggaattgggc 63 ||||||||| |||||||||||| || ||||| ||||||||| |||||| ||| || || | Sbjct: 2737 agaggtggatcctcgccggcgccaccgcgctagtcaccggccgcagcaaaggcatcggcc 2796 Query: 64 acgcaatcgtggaggagctcgtcgggctgggggcgcgggtgcacacctgc 113 ||| ||||||||||||||||| ||| | || || ||||||||||||| Sbjct: 2797 gcgccatcgtggaggagctcgttgggttcggctcgacggtgcacacctgc 2846
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 75.8 bits (38), Expect = 5e-11 Identities = 77/90 (85%) Strand = Plus / Minus Query: 72 gtggaggagctcgtcgggctgggggcgcgggtgcacacctgctccgagaacgccgtggag 131 ||||||||||||| ||| | |||||||| |||||||| ||| || |||||| | |||| Sbjct: 25620534 gtggaggagctcgccggattcggggcgcgcgtgcacacgtgcgcccggaacgcggcggag 25620475 Query: 132 ctggaggcgtgccgtcggcggtgggaggag 161 ||||||||| |||| ||||||||||||||| Sbjct: 25620474 ctggaggcgagccggcggcggtgggaggag 25620445 Score = 75.8 bits (38), Expect = 5e-11 Identities = 77/90 (85%) Strand = Plus / Minus Query: 72 gtggaggagctcgtcgggctgggggcgcgggtgcacacctgctccgagaacgccgtggag 131 ||||||||||||| ||| | |||||||| |||||||| ||| || |||||| | |||| Sbjct: 25509363 gtggaggagctcgccggattcggggcgcgcgtgcacacgtgcgcccggaacgcggcggag 25509304 Query: 132 ctggaggcgtgccgtcggcggtgggaggag 161 ||||||||| |||| ||||||||||||||| Sbjct: 25509303 ctggaggcgagccggcggcggtgggaggag 25509274 Score = 71.9 bits (36), Expect = 8e-10 Identities = 45/48 (93%) Strand = Plus / Plus Query: 4 agaggtggagcctcgccggcgcaacggcgctggtcaccggcggcagca 51 |||||||||||||||||||||| || ||||| |||||||||||||||| Sbjct: 13834750 agaggtggagcctcgccggcgccaccgcgctcgtcaccggcggcagca 13834797 Score = 65.9 bits (33), Expect = 5e-08 Identities = 42/45 (93%) Strand = Plus / Minus Query: 7 ggtggagcctcgccggcgcaacggcgctggtcaccggcggcagca 51 |||||| |||||||||||| |||||||| |||||||||||||||| Sbjct: 25620678 ggtggaccctcgccggcgcgacggcgctcgtcaccggcggcagca 25620634 Score = 65.9 bits (33), Expect = 5e-08 Identities = 42/45 (93%) Strand = Plus / Minus Query: 7 ggtggagcctcgccggcgcaacggcgctggtcaccggcggcagca 51 |||||| |||||||||||| |||||||| |||||||||||||||| Sbjct: 25509501 ggtggaccctcgccggcgcgacggcgctcgtcaccggcggcagca 25509457 Score = 56.0 bits (28), Expect = 5e-05 Identities = 43/48 (89%) Strand = Plus / Plus Query: 4 agaggtggagcctcgccggcgcaacggcgctggtcaccggcggcagca 51 ||||||||| |||||||||||| || ||||| ||||||||| |||||| Sbjct: 13807138 agaggtggatcctcgccggcgccaccgcgctagtcaccggccgcagca 13807185 Score = 52.0 bits (26), Expect = 8e-04 Identities = 41/46 (89%) Strand = Plus / Plus Query: 6 aggtggagcctcgccggcgcaacggcgctggtcaccggcggcagca 51 ||||||||||| |||||||| || ||||| ||||||||||| |||| Sbjct: 13872378 aggtggagccttgccggcgccaccgcgctcgtcaccggcggtagca 13872423 Score = 48.1 bits (24), Expect = 0.012 Identities = 36/40 (90%) Strand = Plus / Plus Query: 12 agcctcgccggcgcaacggcgctggtcaccggcggcagca 51 ||||||||||| || |||||||| |||||||| ||||||| Sbjct: 14164899 agcctcgccggtgccacggcgcttgtcaccggtggcagca 14164938
>gb|AC146947.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0057M18 map near E10005S, complete sequence Length = 140920 Score = 71.9 bits (36), Expect = 8e-10 Identities = 45/48 (93%) Strand = Plus / Plus Query: 4 agaggtggagcctcgccggcgcaacggcgctggtcaccggcggcagca 51 |||||||||||||||||||||| || ||||| |||||||||||||||| Sbjct: 110561 agaggtggagcctcgccggcgccaccgcgctcgtcaccggcggcagca 110608 Score = 56.0 bits (28), Expect = 5e-05 Identities = 43/48 (89%) Strand = Plus / Plus Query: 4 agaggtggagcctcgccggcgcaacggcgctggtcaccggcggcagca 51 ||||||||| |||||||||||| || ||||| ||||||||| |||||| Sbjct: 82949 agaggtggatcctcgccggcgccaccgcgctagtcaccggccgcagca 82996
>ref|XM_471642.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 612 Score = 65.9 bits (33), Expect = 5e-08 Identities = 63/73 (86%) Strand = Plus / Plus Query: 7 ggtggagcctcgccggcgcaacggcgctggtcaccggcggcagcagaggaattgggcacg 66 |||||||||| |||||||| || || || |||||||| ||||||| |||||| |||| || Sbjct: 32 ggtggagccttgccggcgccacagctctcgtcaccggtggcagcaaaggaatcgggcgcg 91 Query: 67 caatcgtggagga 79 | ||||||||||| Sbjct: 92 ccatcgtggagga 104
>dbj|AK111082.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-175-F05, full insert sequence Length = 531 Score = 65.9 bits (33), Expect = 5e-08 Identities = 63/73 (86%) Strand = Plus / Plus Query: 7 ggtggagcctcgccggcgcaacggcgctggtcaccggcggcagcagaggaattgggcacg 66 |||||||||| |||||||| || || || |||||||| ||||||| |||||| |||| || Sbjct: 77 ggtggagccttgccggcgccacagctctcgtcaccggtggcagcaaaggaatcgggcgcg 136 Query: 67 caatcgtggagga 79 | ||||||||||| Sbjct: 137 ccatcgtggagga 149
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 63.9 bits (32), Expect = 2e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 7 ggtggagcctcgccggcgcaacggcgctggtcaccggcggcagcagaggaat 58 ||||||||||||||||||| || || || |||||||||||||||| |||||| Sbjct: 11232835 ggtggagcctcgccggcgccacagctctcgtcaccggcggcagcaaaggaat 11232886 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Plus Query: 4 agaggtggagcctcgccggcgc 25 |||||||||||||||||||||| Sbjct: 19258636 agaggtggagcctcgccggcgc 19258657 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 cggcgctggtcaccggcggc 47 |||||||||||||||||||| Sbjct: 31173317 cggcgctggtcaccggcggc 31173336
>emb|AL731637.2|OSJN00278 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0115I09, complete sequence Length = 141580 Score = 63.9 bits (32), Expect = 2e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 7 ggtggagcctcgccggcgcaacggcgctggtcaccggcggcagcagaggaat 58 ||||||||||||||||||| || || || |||||||||||||||| |||||| Sbjct: 101459 ggtggagcctcgccggcgccacagctctcgtcaccggcggcagcaaaggaat 101510
>dbj|AK108232.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-G04, full insert sequence Length = 1118 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 12 agcctcgccggcgcaacggcgctggtcaccggcggcagcagaggaattgggcacgcaatc 71 ||||||||||| || |||||||| |||||||| ||||||| ||| || || | ||| ||| Sbjct: 87 agcctcgccggtgccacggcgcttgtcaccggtggcagcaaaggcatcggccgcgccatc 146 Query: 72 gtggaggagct 82 ||||| ||||| Sbjct: 147 gtggaagagct 157
>gb|AC145812.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0096A19 map near 50283S, complete sequence Length = 139969 Score = 52.0 bits (26), Expect = 8e-04 Identities = 41/46 (89%) Strand = Plus / Plus Query: 6 aggtggagcctcgccggcgcaacggcgctggtcaccggcggcagca 51 ||||||||||| |||||||| || ||||| ||||||||||| |||| Sbjct: 27935 aggtggagccttgccggcgccaccgcgctcgtcaccggcggtagca 27980
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 52.0 bits (26), Expect = 8e-04 Identities = 38/42 (90%) Strand = Plus / Plus Query: 7 ggtggagcctcgccggcgcaacggcgctggtcaccggcggca 48 ||||||||||||||||| |||||||| ||||||||||||| Sbjct: 40844410 ggtggagcctcgccggcaagacggcgctcgtcaccggcggca 40844451 Score = 52.0 bits (26), Expect = 8e-04 Identities = 38/42 (90%) Strand = Plus / Plus Query: 7 ggtggagcctcgccggcgcaacggcgctggtcaccggcggca 48 ||||||||||||||||| |||||||| ||||||||||||| Sbjct: 40841622 ggtggagcctcgccggcaagacggcgctcgtcaccggcggca 40841663 Score = 42.1 bits (21), Expect = 0.73 Identities = 36/41 (87%) Strand = Plus / Plus Query: 69 atcgtggaggagctcgtcgggctgggggcgcgggtgcacac 109 |||||||||||||||| |||| | |||| | |||||||||| Sbjct: 40844560 atcgtggaggagctcgccgggttcggggtgagggtgcacac 40844600 Score = 42.1 bits (21), Expect = 0.73 Identities = 36/41 (87%) Strand = Plus / Plus Query: 69 atcgtggaggagctcgtcgggctgggggcgcgggtgcacac 109 |||||||||||||||| |||| | |||| | |||||||||| Sbjct: 40841810 atcgtggaggagctcgccgggttcggggtgagggtgcacac 40841850
>dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0052O12 Length = 167881 Score = 52.0 bits (26), Expect = 8e-04 Identities = 38/42 (90%) Strand = Plus / Plus Query: 7 ggtggagcctcgccggcgcaacggcgctggtcaccggcggca 48 ||||||||||||||||| |||||||| ||||||||||||| Sbjct: 147056 ggtggagcctcgccggcaagacggcgctcgtcaccggcggca 147097 Score = 52.0 bits (26), Expect = 8e-04 Identities = 38/42 (90%) Strand = Plus / Plus Query: 7 ggtggagcctcgccggcgcaacggcgctggtcaccggcggca 48 ||||||||||||||||| |||||||| ||||||||||||| Sbjct: 144268 ggtggagcctcgccggcaagacggcgctcgtcaccggcggca 144309 Score = 42.1 bits (21), Expect = 0.73 Identities = 36/41 (87%) Strand = Plus / Plus Query: 69 atcgtggaggagctcgtcgggctgggggcgcgggtgcacac 109 |||||||||||||||| |||| | |||| | |||||||||| Sbjct: 147206 atcgtggaggagctcgccgggttcggggtgagggtgcacac 147246 Score = 42.1 bits (21), Expect = 0.73 Identities = 36/41 (87%) Strand = Plus / Plus Query: 69 atcgtggaggagctcgtcgggctgggggcgcgggtgcacac 109 |||||||||||||||| |||| | |||| | |||||||||| Sbjct: 144456 atcgtggaggagctcgccgggttcggggtgagggtgcacac 144496
>dbj|AP003272.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506E04 Length = 139934 Score = 52.0 bits (26), Expect = 8e-04 Identities = 38/42 (90%) Strand = Plus / Plus Query: 7 ggtggagcctcgccggcgcaacggcgctggtcaccggcggca 48 ||||||||||||||||| |||||||| ||||||||||||| Sbjct: 56516 ggtggagcctcgccggcaagacggcgctcgtcaccggcggca 56557 Score = 52.0 bits (26), Expect = 8e-04 Identities = 38/42 (90%) Strand = Plus / Plus Query: 7 ggtggagcctcgccggcgcaacggcgctggtcaccggcggca 48 ||||||||||||||||| |||||||| ||||||||||||| Sbjct: 53728 ggtggagcctcgccggcaagacggcgctcgtcaccggcggca 53769 Score = 42.1 bits (21), Expect = 0.73 Identities = 36/41 (87%) Strand = Plus / Plus Query: 69 atcgtggaggagctcgtcgggctgggggcgcgggtgcacac 109 |||||||||||||||| |||| | |||| | |||||||||| Sbjct: 56666 atcgtggaggagctcgccgggttcggggtgagggtgcacac 56706 Score = 42.1 bits (21), Expect = 0.73 Identities = 36/41 (87%) Strand = Plus / Plus Query: 69 atcgtggaggagctcgtcgggctgggggcgcgggtgcacac 109 |||||||||||||||| |||| | |||| | |||||||||| Sbjct: 53916 atcgtggaggagctcgccgggttcggggtgagggtgcacac 53956
>gb|AC145367.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0064J09 map near 50283S, complete sequence Length = 111122 Score = 48.1 bits (24), Expect = 0.012 Identities = 36/40 (90%) Strand = Plus / Plus Query: 12 agcctcgccggcgcaacggcgctggtcaccggcggcagca 51 ||||||||||| || |||||||| |||||||| ||||||| Sbjct: 71305 agcctcgccggtgccacggcgcttgtcaccggtggcagca 71344
>ref|XM_479027.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2281 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Plus Query: 149 gcggtgggaggagatgaagcag 170 |||||||||||||||||||||| Sbjct: 429 gcggtgggaggagatgaagcag 450
>gb|AY661566.1| Saccharopolyspora erythraea polyketide synthase gene cluster, complete sequence Length = 32299 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Plus Query: 27 acggcgctggtcaccggcggca 48 |||||||||||||||||||||| Sbjct: 30452 acggcgctggtcaccggcggca 30473
>emb|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055C08, complete sequence Length = 145670 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Plus Query: 4 agaggtggagcctcgccggcgc 25 |||||||||||||||||||||| Sbjct: 40468 agaggtggagcctcgccggcgc 40489
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Plus Query: 149 gcggtgggaggagatgaagcag 170 |||||||||||||||||||||| Sbjct: 24398481 gcggtgggaggagatgaagcag 24398502
>dbj|AP003840.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1634_B10 Length = 100294 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Plus Query: 149 gcggtgggaggagatgaagcag 170 |||||||||||||||||||||| Sbjct: 24348 gcggtgggaggagatgaagcag 24369
>emb|X56107.1|SEERYA S. erythraea eryA gene for 6-deoxyerythronolide B synthase Length = 9769 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Plus Query: 27 acggcgctggtcaccggcggca 48 |||||||||||||||||||||| Sbjct: 7746 acggcgctggtcaccggcggca 7767
>emb|X62569.1|SEERYABS S.erythraea eryA gene for 6-deoxyerythronolyde B synthase II & III Length = 20444 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Plus Query: 27 acggcgctggtcaccggcggca 48 |||||||||||||||||||||| Sbjct: 18421 acggcgctggtcaccggcggca 18442
>dbj|AK069667.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027N04, full insert sequence Length = 2281 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Plus Query: 149 gcggtgggaggagatgaagcag 170 |||||||||||||||||||||| Sbjct: 429 gcggtgggaggagatgaagcag 450
>dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complete sequence Length = 210614 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Minus Query: 27 acggcgctggtcaccggcggca 48 |||||||||||||||||||||| Sbjct: 80911 acggcgctggtcaccggcggca 80890
>gb|M63677.1|SERERYAB S.erythraea second and third ORF's of eryA gene, complete cds Length = 20235 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Plus Query: 27 acggcgctggtcaccggcggca 48 |||||||||||||||||||||| Sbjct: 18388 acggcgctggtcaccggcggca 18409
>dbj|AB016763.1| Streptomyces rochei plasmid pSLA2-L gene for lankamycin synthase, partial cds Length = 3573 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Plus Query: 27 acggcgctggtcaccggcggca 48 |||||||||||||||||||||| Sbjct: 142 acggcgctggtcaccggcggca 163
>ref|NM_187487.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 927 Score = 42.1 bits (21), Expect = 0.73 Identities = 30/33 (90%) Strand = Plus / Plus Query: 180 ggcaagctcgacatactagtaaacaacgtggga 212 |||||||||||||| || || |||||||||||| Sbjct: 397 ggcaagctcgacatcctcgtgaacaacgtggga 429
>ref|NM_187486.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 882 Score = 42.1 bits (21), Expect = 0.73 Identities = 30/33 (90%) Strand = Plus / Plus Query: 179 cggcaagctcgacatactagtaaacaacgtggg 211 ||||||||||||||| || |||||||| ||||| Sbjct: 288 cggcaagctcgacatcctcgtaaacaatgtggg 320
>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16 Length = 347137 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 ggtgcacacctgctccgagaa 121 ||||||||||||||||||||| Sbjct: 236459 ggtgcacacctgctccgagaa 236439
>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14 Length = 349305 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 ggtgcacacctgctccgagaa 121 ||||||||||||||||||||| Sbjct: 174189 ggtgcacacctgctccgagaa 174169
>emb|BX640413.1| Bordetella pertussis strain Tohama I, complete genome; segment 3/12 Length = 349028 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 ggtgcacacctgctccgagaa 121 ||||||||||||||||||||| Sbjct: 181103 ggtgcacacctgctccgagaa 181123
>dbj|AK109304.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-E03, full insert sequence Length = 927 Score = 42.1 bits (21), Expect = 0.73 Identities = 30/33 (90%) Strand = Plus / Plus Query: 179 cggcaagctcgacatactagtaaacaacgtggg 211 ||||||||||||||| || |||||||| ||||| Sbjct: 349 cggcaagctcgacatcctcgtaaacaatgtggg 381
>dbj|AK099430.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013012E01, full insert sequence Length = 1051 Score = 42.1 bits (21), Expect = 0.73 Identities = 30/33 (90%) Strand = Plus / Plus Query: 179 cggcaagctcgacatactagtaaacaacgtggg 211 ||||||||||||||| || |||||||| ||||| Sbjct: 325 cggcaagctcgacatcctcgtaaacaatgtggg 357
>dbj|AK069762.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027K22, full insert sequence Length = 1272 Score = 42.1 bits (21), Expect = 0.73 Identities = 30/33 (90%) Strand = Plus / Plus Query: 180 ggcaagctcgacatactagtaaacaacgtggga 212 |||||||||||||| || || |||||||||||| Sbjct: 431 ggcaagctcgacatcctcgtgaacaacgtggga 463
>dbj|AK058655.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-F07, full insert sequence Length = 1166 Score = 42.1 bits (21), Expect = 0.73 Identities = 30/33 (90%) Strand = Plus / Plus Query: 180 ggcaagctcgacatactagtaaacaacgtggga 212 |||||||||||||| || || |||||||||||| Sbjct: 313 ggcaagctcgacatcctcgtgaacaacgtggga 345
>ref|XM_473876.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 900 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 cggcgctggtcaccggcggc 47 |||||||||||||||||||| Sbjct: 47 cggcgctggtcaccggcggc 66
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 91 tgggggcgcgggtgcacacctgctccga 118 |||||||||||| |||||||||||||| Sbjct: 1816064 tgggggcgcgggctcacacctgctccga 1816037
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 ctcgccggcgcaacggcgct 34 |||||||||||||||||||| Sbjct: 2164809 ctcgccggcgcaacggcgct 2164790
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 acggcgctggtcaccggcggcagc 50 ||||||||||||||||||| |||| Sbjct: 25696775 acggcgctggtcaccggcgccagc 25696752
>gb|AC137991.3| Oryza sativa chromosome 3 BAC OSJNBa0034D21 genomic sequence, complete sequence Length = 190834 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 acggcgctggtcaccggcggcagc 50 ||||||||||||||||||| |||| Sbjct: 148121 acggcgctggtcaccggcgccagc 148144
>gb|AC139174.3| Oryza sativa chromosome 3 BAC OSJNBb0065L20 genomic sequence, complete sequence Length = 167427 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 acggcgctggtcaccggcggcagc 50 ||||||||||||||||||| |||| Sbjct: 5576 acggcgctggtcaccggcgccagc 5599
>ref|XM_541912.2| PREDICTED: Canis familiaris similar to LIM domains containing protein 1 (LOC484796), mRNA Length = 2435 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 cgggctgggggcgcgggtgc 105 |||||||||||||||||||| Sbjct: 433 cgggctgggggcgcgggtgc 414
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ggagatgaagcagaccttgg 177 |||||||||||||||||||| Sbjct: 1499358 ggagatgaagcagaccttgg 1499377
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 gcctcgccggcgcaacggcgctgg 36 ||||||| |||||||||||||||| Sbjct: 1742554 gcctcgcgggcgcaacggcgctgg 1742577
>emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genome; segment 12/16 Length = 348068 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 gcgctggtcaccggcggcag 49 |||||||||||||||||||| Sbjct: 180347 gcgctggtcaccggcggcag 180366
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 ctcgccggcgcaacggcgct 34 |||||||||||||||||||| Sbjct: 326437 ctcgccggcgcaacggcgct 326418
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29 Length = 290850 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 acggcgctggtcaccggcggcagc 50 ||||||||||||||||| |||||| Sbjct: 63295 acggcgctggtcaccggtggcagc 63272
>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17, complete sequence Length = 160484 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 cggcgctggtcaccggcggc 47 |||||||||||||||||||| Sbjct: 155398 cggcgctggtcaccggcggc 155417
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 ggcgctggtcaccggcggca 48 |||||||||||||||||||| Sbjct: 2884255 ggcgctggtcaccggcggca 2884236 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 ggcgctggtcaccggcggca 48 |||||||||||||||||||| Sbjct: 2000029 ggcgctggtcaccggcggca 2000048
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 ctcgccggcgcaacggcgct 34 |||||||||||||||||||| Sbjct: 1998210 ctcgccggcgcaacggcgct 1998229
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 acggcgctggtcaccggcggcagc 50 ||||||||||||||||||| |||| Sbjct: 25788084 acggcgctggtcaccggcgccagc 25788061
>dbj|AK073265.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025B16, full insert sequence Length = 1364 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 cggcgctggtcaccggcggc 47 |||||||||||||||||||| Sbjct: 290 cggcgctggtcaccggcggc 309 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,605,138 Number of Sequences: 3902068 Number of extensions: 1605138 Number of successful extensions: 130471 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 128821 Number of HSP's gapped (non-prelim): 1648 length of query: 226 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 204 effective length of database: 17,147,199,772 effective search space: 3498028753488 effective search space used: 3498028753488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
