ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet50e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YU0O_CAEEL (Q19753) Hypothetical protein F23B12.7 in chromosome V 28 5.7
2VG13_ICHV1 (Q00166) Hypothetical gene 13 zinc-binding protein 28 7.5

>YU0O_CAEEL (Q19753) Hypothetical protein F23B12.7 in chromosome V|
          Length = 953

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -2

Query: 145 LGAPERAPWLRAVVGARGGRSMYQSMA---LLLQASSRCCSAL 26
           LGA     W+   +GARG ++ Y S+A   L + AS    S L
Sbjct: 609 LGASSSGGWVHRSIGARGAKTPYDSVARNPLFVDASHTADSEL 651



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>VG13_ICHV1 (Q00166) Hypothetical gene 13 zinc-binding protein|
          Length = 82

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 70 MALLLQASSRCCSALGLRCGGVC 2
          MA LL     CC+ + L CGG C
Sbjct: 1  MAFLLPFLCNCCNPMSLLCGGGC 23


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,898,651
Number of Sequences: 219361
Number of extensions: 281952
Number of successful extensions: 1375
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1375
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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