ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet50e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APRR2_ARATH (Q6LA43) Two-component response regulator-like APRR2... 42 5e-04
2ARR18_ARATH (Q9FGT7) Two-component response regulator ARR18 33 0.25
3ARR12_ARATH (P62598) Two-component response regulator ARR12 32 0.56
4ARR1_ARATH (Q940D0) Two-component response regulator ARR1 31 0.73
5ARR20_ARATH (Q9LZJ8) Putative two-component response regulator A... 31 0.95
6ARR2_ARATH (Q9ZWJ9) Two-component response regulator ARR2 (Recei... 30 1.2
7MYBF_ARATH (Q700D9) Putative Myb family transcription factor At1... 30 1.2
8ARR19_ARATH (Q9M9B9) Putative two-component response regulator A... 30 1.6
9ARR11_ARATH (Q9FXD6) Two-component response regulator ARR11 (Rec... 28 4.7
10ARR10_ARATH (O49397) Two-component response regulator ARR10 (Rec... 28 6.2
11PBPA_PSEAE (Q07806) Penicillin-binding protein 1A (PBP-1a) (PBP1... 28 8.1

>APRR2_ARATH (Q6LA43) Two-component response regulator-like APRR2|
           (Pseudo-response regulator 2) (TOC2 protein)
          Length = 535

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 17/19 (89%), Positives = 19/19 (100%)
 Frame = +2

Query: 203 KVDWTPELHRRFVQAVEQL 259
           KVDWTPELH++FVQAVEQL
Sbjct: 298 KVDWTPELHKKFVQAVEQL 316



to top

>ARR18_ARATH (Q9FGT7) Two-component response regulator ARR18|
          Length = 635

 Score = 32.7 bits (73), Expect = 0.25
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = +2

Query: 191 RRKVKVDWTPELHRRFVQAVEQL 259
           R+K +V W+ ELH++FV AV+QL
Sbjct: 192 RKKPRVVWSQELHQKFVSAVQQL 214



to top

>ARR12_ARATH (P62598) Two-component response regulator ARR12|
          Length = 596

 Score = 31.6 bits (70), Expect = 0.56
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +2

Query: 191 RRKVKVDWTPELHRRFVQAVEQL 259
           ++K +V WT ELH++FV AV QL
Sbjct: 193 QKKQRVVWTVELHKKFVAAVNQL 215



to top

>ARR1_ARATH (Q940D0) Two-component response regulator ARR1|
          Length = 690

 Score = 31.2 bits (69), Expect = 0.73
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +2

Query: 83  DDSSAAVGSENS--KSSASAEGHXXXXXXXXXXXXXHGRRKVKVDWTPELHRRFVQAVEQ 256
           DD+S++V   N+   SS   +                  +K +V W+ ELH++FV AV Q
Sbjct: 197 DDNSSSVNEGNNWRSSSRKRKDEEGEEQGDDKDEDASNLKKPRVVWSVELHQQFVAAVNQ 256

Query: 257 L 259
           L
Sbjct: 257 L 257



to top

>ARR20_ARATH (Q9LZJ8) Putative two-component response regulator ARR20|
          Length = 426

 Score = 30.8 bits (68), Expect = 0.95
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +2

Query: 194 RKVKVDWTPELHRRFVQAVEQL 259
           +K ++ WTPELH +F  AVE++
Sbjct: 210 KKPRMQWTPELHHKFEVAVEKM 231



to top

>ARR2_ARATH (Q9ZWJ9) Two-component response regulator ARR2 (Receiver-like|
           protein 5)
          Length = 664

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +2

Query: 83  DDSSAAVGSENSKSSASAEGHXXXXXXXXXXXXXHGRRKVKVDWTPELHRRFVQAVEQL 259
           D++S++V   N +SS   +                  +K +V W+ ELH++FV AV QL
Sbjct: 179 DNNSSSVNEGNGRSSRKRKEEEVDDQGDDKEDSS-SLKKPRVVWSVELHQQFVAAVNQL 236



to top

>MYBF_ARATH (Q700D9) Putative Myb family transcription factor At1g14600|
          Length = 255

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +2

Query: 203 KVDWTPELHRRFVQAVEQL 259
           ++ WTPELHR FV AV+ L
Sbjct: 25  RLRWTPELHRSFVHAVDLL 43



to top

>ARR19_ARATH (Q9M9B9) Putative two-component response regulator ARR19|
          Length = 407

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +2

Query: 194 RKVKVDWTPELHRRFVQAVE 253
           RK ++ WT ELH++F++A+E
Sbjct: 214 RKPRMTWTEELHQKFLEAIE 233



to top

>ARR11_ARATH (Q9FXD6) Two-component response regulator ARR11 (Receiver-like|
           protein 3)
          Length = 521

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 194 RKVKVDWTPELHRRFVQAVEQL 259
           +K +V W+ ELH +FV AV Q+
Sbjct: 192 KKARVVWSFELHHKFVNAVNQI 213



to top

>ARR10_ARATH (O49397) Two-component response regulator ARR10 (Receiver-like|
           protein 4)
          Length = 552

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 191 RRKVKVDWTPELHRRFVQAVEQL 259
           ++K +V WT ELH +F+ AV+ L
Sbjct: 181 QKKPRVLWTHELHNKFLAAVDHL 203



to top

>PBPA_PSEAE (Q07806) Penicillin-binding protein 1A (PBP-1a) (PBP1a) [Includes:|
           Penicillin-insensitive transglycosylase (EC 2.4.2.-)
           (Peptidoglycan TGase); Penicillin-sensitive
           transpeptidase (EC 3.4.-.-) (DD-transpeptidase)]
          Length = 822

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 151 EDVGSRSDQELPRQAEGEGGLD 216
           ED G+  D E P  AEGEG ++
Sbjct: 618 EDAGNPGDPEHPESAEGEGSIE 639


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.308    0.136    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,731,548
Number of Sequences: 219361
Number of extensions: 198251
Number of successful extensions: 424
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 80,573,946
effective HSP length: 62
effective length of database: 66,973,564
effective search space used: 1607365536
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
to top