ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet50e05 |
|---|---|
| Clone Library Name | barley_pub |
>COBC_ECOLI (P52086) Alpha-ribazole phosphatase (EC 3.1.3.73)| (Alpha-ribazole-5'-phosphate phosphatase) Length = 203 Score = 32.3 bits (72), Expect = 0.27 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = -2 Query: 277 RNILVIIHQAILEVLLAELLGDVVETPW 194 +NILV+ HQ +L +L+A L+G E W Sbjct: 142 QNILVVSHQGVLSLLIARLIGMPAEAMW 169
>RIR1_HAEIN (P43754) Ribonucleoside-diphosphate reductase alpha subunit (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 756 Score = 31.6 bits (70), Expect = 0.47 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = +2 Query: 173 YNHGDGPPRSFDHIPKQFREENLKDGLMDNY 265 Y H D PPR +DH+ K R E L+D+Y Sbjct: 94 YGHFD-PPRLYDHVKKLVRMEKYDQALLDDY 123
>GOGB1_HUMAN (Q14789) Golgin subfamily B member 1 (Giantin) (Macrogolgin) (372| kDa Golgi complex-associated protein) (GCP372) Length = 3259 Score = 31.6 bits (70), Expect = 0.47 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%) Frame = +2 Query: 233 ENLKDGLMDNYKNVPQFLYGLSPSQMEMFMTDNNP--YNRLSQKVTEESISALR 388 + L+D L K + QFL L Q E + P YN +Q VTEE+I++L+ Sbjct: 421 QQLEDQLQQKSKEISQFLNRLPLQQHETASQTSFPDVYNEGTQAVTEENIASLQ 474
>LTBP4_MOUSE (Q8K4G1) Latent transforming growth factor beta-binding protein 4| precursor (LTBP-4) Length = 1666 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +1 Query: 199 EFRPHPQAVPRGEPQGWPDG*LQECSSVPLWLKP 300 E +P P++ PR E Q WP+ L S+P W P Sbjct: 550 ESQPRPESRPRPESQPWPEFPL---PSIPAWTGP 580
>COBC_SALTI (P58652) Alpha-ribazole phosphatase (EC 3.1.3.73)| (Alpha-ribazole-5'-phosphate phosphatase) Length = 202 Score = 29.3 bits (64), Expect = 2.3 Identities = 11/33 (33%), Positives = 20/33 (60%) Frame = -2 Query: 292 AIKELRNILVIIHQAILEVLLAELLGDVVETPW 194 A + +N+L++ HQ +L +L+A LL + W Sbjct: 137 AFSDCQNLLIVSHQGVLSLLIARLLAMPAASLW 169
>UMP1_ARATH (Q9LKA5) Unknown mitochondrial protein At3g15000| Length = 395 Score = 28.9 bits (63), Expect = 3.0 Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 1/78 (1%) Frame = +2 Query: 116 HPQSAARLPRRPVGGCRCQYNHGDGPPRSFDHIPKQFREENLKDGLMDNYKNVPQFLYG- 292 HP P+ +GG R N+G PP ++ P N+ NY P YG Sbjct: 294 HPPPYGAPPQNNMGGPRPPQNYGGTPPPNYGGAPP---ANNMGGAPPPNYGGGPPPQYGA 350 Query: 293 LSPSQMEMFMTDNNPYNR 346 + P Q NN Y + Sbjct: 351 VPPPQYGGAPPQNNNYQQ 368
>RIBF_SHIFL (P0AG43) Riboflavin biosynthesis protein ribF [Includes: Riboflavin| kinase (EC 2.7.1.26) (Flavokinase); FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase)] Length = 313 Score = 28.9 bits (63), Expect = 3.0 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Frame = +2 Query: 137 LPRRPVGGCRCQYNHGDGPPRSFDHIPKQFREENLKDGLMDNYKNVPQFLYGLSPSQMEM 316 L + P GC + DG R + + +EE K +N+P + P +E+ Sbjct: 10 LSQAPQEGCVLTIGNFDGVHRGHRALLQGLQEEGRK-------RNLPVMVMLFEPQPLEL 62 Query: 317 FMTDNNP--YNRLSQKV 361 F TD P RL +K+ Sbjct: 63 FATDKAPARLTRLREKL 79
>RIBF_ECOLI (P0AG40) Riboflavin biosynthesis protein ribF [Includes: Riboflavin| kinase (EC 2.7.1.26) (Flavokinase); FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase)] Length = 313 Score = 28.9 bits (63), Expect = 3.0 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Frame = +2 Query: 137 LPRRPVGGCRCQYNHGDGPPRSFDHIPKQFREENLKDGLMDNYKNVPQFLYGLSPSQMEM 316 L + P GC + DG R + + +EE K +N+P + P +E+ Sbjct: 10 LSQAPQEGCVLTIGNFDGVHRGHRALLQGLQEEGRK-------RNLPVMVMLFEPQPLEL 62 Query: 317 FMTDNNP--YNRLSQKV 361 F TD P RL +K+ Sbjct: 63 FATDKAPARLTRLREKL 79
>RIBF_ECOL6 (P0AG41) Riboflavin biosynthesis protein ribF [Includes: Riboflavin| kinase (EC 2.7.1.26) (Flavokinase); FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase)] Length = 313 Score = 28.9 bits (63), Expect = 3.0 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Frame = +2 Query: 137 LPRRPVGGCRCQYNHGDGPPRSFDHIPKQFREENLKDGLMDNYKNVPQFLYGLSPSQMEM 316 L + P GC + DG R + + +EE K +N+P + P +E+ Sbjct: 10 LSQAPQEGCVLTIGNFDGVHRGHRALLQGLQEEGRK-------RNLPVMVMLFEPQPLEL 62 Query: 317 FMTDNNP--YNRLSQKV 361 F TD P RL +K+ Sbjct: 63 FATDKAPARLTRLREKL 79
>RIBF_ECO57 (P0AG42) Riboflavin biosynthesis protein ribF [Includes: Riboflavin| kinase (EC 2.7.1.26) (Flavokinase); FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase)] Length = 313 Score = 28.9 bits (63), Expect = 3.0 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Frame = +2 Query: 137 LPRRPVGGCRCQYNHGDGPPRSFDHIPKQFREENLKDGLMDNYKNVPQFLYGLSPSQMEM 316 L + P GC + DG R + + +EE K +N+P + P +E+ Sbjct: 10 LSQAPQEGCVLTIGNFDGVHRGHRALLQGLQEEGRK-------RNLPVMVMLFEPQPLEL 62 Query: 317 FMTDNNP--YNRLSQKV 361 F TD P RL +K+ Sbjct: 63 FATDKAPARLTRLREKL 79
>MAGC3_HUMAN (Q8TD91) Melanoma-associated antigen C3 (MAGE-C3 antigen)| (Hepatocellular carcinoma-associated antigen 2) Length = 643 Score = 28.9 bits (63), Expect = 3.0 Identities = 16/59 (27%), Positives = 25/59 (42%) Frame = +1 Query: 214 PQAVPRGEPQGWPDG*LQECSSVPLWLKPISDGNVYDRQQPL*SAVTESYRGKHFCFEE 390 P+ P+G PQ P L CSS LW + + + + A+ ES + +E Sbjct: 400 PKISPQGPPQSPPQSPLDSCSSPLLWTRLDEESSSEEEDTATWHALPESESLPRYALDE 458
>TLR8_HUMAN (Q9NR97) Toll-like receptor 8 precursor| Length = 1041 Score = 28.9 bits (63), Expect = 3.0 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 10/60 (16%) Frame = +2 Query: 236 NLKDGLMDNYKNV----------PQFLYGLSPSQMEMFMTDNNPYNRLSQKVTEESISAL 385 N+ DG N KN+ PQ GL S E+ + NN YN +T+E IS L Sbjct: 115 NITDGAFLNLKNLRELLLEDNQLPQIPSGLPESLTELSLIQNNIYN-----ITKEGISRL 169
>COBC_SALTY (P39701) Alpha-ribazole phosphatase (EC 3.1.3.73)| (Alpha-ribazole-5'-phosphate phosphatase) Length = 202 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/33 (33%), Positives = 20/33 (60%) Frame = -2 Query: 292 AIKELRNILVIIHQAILEVLLAELLGDVVETPW 194 A + +N+L++ HQ +L +L+A LL + W Sbjct: 137 AFSDCQNLLIVSHQGVLSLLIARLLTMPAASLW 169
>KR211_HUMAN (Q3LI58) Keratin-associated protein 21-1| Length = 79 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/31 (41%), Positives = 14/31 (45%) Frame = -1 Query: 266 CNYPSGHP*GSPRGTAWGCGRNSLAGRRRGC 174 C Y SG G GT +GCG G GC Sbjct: 18 CGYGSGSGCGCGYGTGYGCGYGCGFGSHYGC 48
>SPB1_YARLI (Q6C9Q1) AdoMet-dependent rRNA methyltransferase SPB1 (EC 2.1.1.-)| (2'-O-ribose RNA methyltransferase) (S-adenosyl-L-methionine-dependent methyltransferase) Length = 850 Score = 27.7 bits (60), Expect = 6.8 Identities = 9/26 (34%), Positives = 19/26 (73%) Frame = +2 Query: 311 EMFMTDNNPYNRLSQKVTEESISALR 388 + F D N +N+L++ +T+E++ AL+ Sbjct: 706 QWFQDDENKHNKLNKPITKEAVEALK 731
>CLPB_HAEDU (Q7VNH1) Chaperone clpB| Length = 856 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 6/51 (11%) Frame = +2 Query: 257 DNYKNVPQFLYGLSPSQMEMFMT------DNNPYNRLSQKVTEESISALRS 391 DN++ + + YG P+ + +NN ++ L KVTEE I+ + S Sbjct: 491 DNFEKMSELQYGTIPALEKQLQDAIKREEENNDHHLLRTKVTEEEIAEVLS 541
>MAAZ4_SCHCO (P37938) Mating-type protein A-alpha Z4| Length = 940 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = -3 Query: 258 SIRPSLRFSSRNCLGMWSKLLGGPSPWLYWHLQPPT 151 S+ SL SR K+ G P+PW+ W L+ T Sbjct: 595 SVSVSLPLPSRGVPSGGIKVTGDPTPWVNWDLEAHT 630
>CD2B2_MOUSE (Q9CWK3) CD2 antigen cytoplasmic tail-binding protein 2 (CD2| cytoplasmic domain-binding protein) (CD2 tail-binding protein) Length = 342 Score = 27.7 bits (60), Expect = 6.8 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 15/63 (23%) Frame = +2 Query: 116 HPQSAARLPRRPVG-GCRCQYNHGDGPPRSFDHIPKQFRE--------------ENLKDG 250 + ++ RL R G GCR Q +H PP S D ++ E E+ DG Sbjct: 219 YQETRERLAMRLKGLGCRAQGSHDPTPPPSLDMFAEEVAEGELETPTPTQREEAESAGDG 278 Query: 251 LMD 259 LMD Sbjct: 279 LMD 281
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein| Length = 1803 Score = 27.3 bits (59), Expect = 8.8 Identities = 20/69 (28%), Positives = 28/69 (40%) Frame = +2 Query: 185 DGPPRSFDHIPKQFREENLKDGLMDNYKNVPQFLYGLSPSQMEMFMTDNNPYNRLSQKVT 364 DG R+ +I K + + D D + V L E + DN P RL T Sbjct: 855 DGRVRNTQNINKSHQFSSDNDDEEDQIETVTNLCEAL-----ENYEDDNKPITRLEDLFT 909 Query: 365 EESISALRS 391 EE +S + S Sbjct: 910 EEELSQIDS 918
>ERBB_ALV (P00534) Tyrosine-protein kinase transforming protein erbB (EC| 2.7.10.1) Length = 634 Score = 27.3 bits (59), Expect = 8.8 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Frame = +2 Query: 167 CQYNHGDGPPRSFDHIPKQFREEN----LKDGLMDNYKNVPQFLYGLSPSQMEMFMTDNN 334 C +G G P D +++ + L++ + D + P+++ L P + M N Sbjct: 469 CIDRNGQGHPVREDSFVQRYSSDPTGNFLEESIDDGFLPAPEYVNQLMPKKPSTAMVQNQ 528 Query: 335 PYNRLS 352 YN +S Sbjct: 529 IYNNIS 534
>ATRX_RAT (P70486) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent| helicase ATRX) (X-linked nuclear protein) (pABP-2) (Fragment) Length = 527 Score = 27.3 bits (59), Expect = 8.8 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = +2 Query: 326 DNNPYNRLSQKVTEESISALRSYDEFG 406 DN+P NR+++K+ E I A S DE G Sbjct: 365 DNDPENRIAKKMLLEEIKANLSSDEDG 391
>F26_RANCA (Q91309) 6PF-2-K/Fru-2,6-P2ASE liver/muscle isozymes [Includes:| 6-phosphofructo-2-kinase (EC 2.7.1.105); Fructose-2,6-bisphosphatase (EC 3.1.3.46)] Length = 470 Score = 27.3 bits (59), Expect = 8.8 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -2 Query: 289 IKELRNILVIIHQAILEVLLAELLGDVVE 203 ++ N+LVI HQA++ LLA L E Sbjct: 381 LERQENVLVICHQAVMRCLLAYFLDKTAE 409
>F264_RAT (P25114) 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4| (6PF-2-K/Fru-2,6-P2ASE testis-type isozyme) [Includes: 6-phosphofructo-2-kinase (EC 2.7.1.105); Fructose-2,6-bisphosphatase (EC 3.1.3.46)] Length = 468 Score = 27.3 bits (59), Expect = 8.8 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -2 Query: 289 IKELRNILVIIHQAILEVLLAELLGDVVE 203 ++ N+LVI HQA++ LLA L E Sbjct: 379 LERQENVLVICHQAVMRCLLAYFLDKAAE 407
>F264_HUMAN (Q16877) 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4| (6PF-2-K/Fru-2,6-P2ASE testis-type isozyme) [Includes: 6-phosphofructo-2-kinase (EC 2.7.1.105); Fructose-2,6-bisphosphatase (EC 3.1.3.46)] Length = 468 Score = 27.3 bits (59), Expect = 8.8 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -2 Query: 289 IKELRNILVIIHQAILEVLLAELLGDVVE 203 ++ N+LVI HQA++ LLA L E Sbjct: 379 LERQENVLVICHQAVMRCLLAYFLDKAAE 407
>F263_RAT (O35552) 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3| (6PF-2-K/Fru-2,6-P2ASE brain-type isozyme) (RB2K) [Includes: 6-phosphofructo-2-kinase (EC 2.7.1.105); Fructose-2,6-bisphosphatase (EC 3.1.3.46)] Length = 555 Score = 27.3 bits (59), Expect = 8.8 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -2 Query: 289 IKELRNILVIIHQAILEVLLAELLGDVVE 203 ++ N+LVI HQA+L LLA L E Sbjct: 377 LERQENVLVICHQAVLRCLLAYFLDKSAE 405
>CS029_HUMAN (Q8WUQ7) Protein C19orf29 (NY-REN-24 antigen)| Length = 690 Score = 27.3 bits (59), Expect = 8.8 Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 11/85 (12%) Frame = +2 Query: 185 DGPPRSFDHIPKQFREENLKDGLMDNYKNVPQFLYGLSPSQMEMFMTDNNPYNRLSQ--- 355 DG + D + K E+ D L FL GL+ + ME + D Y L Q Sbjct: 234 DGRAKPIDLLAKYISAED--DDLAVEMHEPYTFLNGLTVADMEDLLEDIQVYMELEQGKN 291 Query: 356 --------KVTEESISALRSYDEFG 406 +TE+ IS LR + G Sbjct: 292 ADFWRDMTTITEDEISKLRKLEASG 316
>ATRX_PONPY (Q7YQM3) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent| helicase ATRX) (X-linked helicase II) (X-linked nuclear protein) (XNP) Length = 2492 Score = 27.3 bits (59), Expect = 8.8 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = +2 Query: 326 DNNPYNRLSQKVTEESISALRSYDEFG 406 DN+P NR+++K+ E I A S DE G Sbjct: 1264 DNDPENRIAKKMLLEEIKANLSSDEDG 1290
>ATRX_PANTR (Q7YQM4) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent| helicase ATRX) (X-linked helicase II) (X-linked nuclear protein) (XNP) Length = 2492 Score = 27.3 bits (59), Expect = 8.8 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = +2 Query: 326 DNNPYNRLSQKVTEESISALRSYDEFG 406 DN+P NR+++K+ E I A S DE G Sbjct: 1264 DNDPENRIAKKMLLEEIKANLSSDEDG 1290
>ATRX_HUMAN (P46100) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent| helicase ATRX) (X-linked helicase II) (X-linked nuclear protein) (XNP) (Znf-HX) Length = 2492 Score = 27.3 bits (59), Expect = 8.8 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = +2 Query: 326 DNNPYNRLSQKVTEESISALRSYDEFG 406 DN+P NR+++K+ E I A S DE G Sbjct: 1264 DNDPENRIAKKMLLEEIKANLSSDEDG 1290
>F263_HUMAN (Q16875) 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3| (6PF-2-K/Fru-2,6-P2ASE brain/placenta-type isozyme) (iPFK-2) (NY-REN-56 antigen) [Includes: 6-phosphofructo-2-kinase (EC 2.7.1.105); Fructose-2,6-bisphosphatase (EC 3.1.3.46)] Length = 520 Score = 27.3 bits (59), Expect = 8.8 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -2 Query: 289 IKELRNILVIIHQAILEVLLAELLGDVVE 203 ++ N+LVI HQA+L LLA L E Sbjct: 377 LERQENVLVICHQAVLRCLLAYFLDKSAE 405
>ATRX_MOUSE (Q61687) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent| helicase ATRX) (X-linked nuclear protein) (Heterochromatin protein 2) (HP1 alpha-interacting protein) (HP1-BP38 protein) Length = 2476 Score = 27.3 bits (59), Expect = 8.8 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = +2 Query: 326 DNNPYNRLSQKVTEESISALRSYDEFG 406 DN+P NR+++K+ E I A S DE G Sbjct: 1243 DNDPENRIAKKMLLEEIKANLSSDEDG 1269 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,306,086 Number of Sequences: 219361 Number of extensions: 936785 Number of successful extensions: 2552 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 2478 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2549 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
