>SYH_THEFY (Q47RX0) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 438

 Score = 30.8 bits (68), Expect = 0.96
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = -1

Query: 249 LEKPPTDALRPIIPDNACILCLTAAAGTELADAYSSDTVIVSSPRK 112
           L K   DA+R I+ D A +    AAA  ELA+   SDT +V +  K
Sbjct: 200 LHKIGADAVREILIDQAGLSSDQAAACLELAEIRGSDTTVVDAVAK 245

>M470_ARATH (P93302) Hypothetical mitochondrial protein AtMg00470 (ORF122a)|
          Length = 122

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 5   RPRLLREAAVGNFPQWAKA*RSNA--AWRWKAYGSSTSFLGEETM 133
           R RLL E AVGNFPQ  K   S +  A R   + S TS   +E +
Sbjct: 43  RLRLLLELAVGNFPQGFKIHLSGSFQAVRLALFSSFTSLRTDELL 87

>BCR_HUMAN (P11274) Breakpoint cluster region protein (EC 2.7.11.1) (NY-REN-26|
           antigen)
          Length = 1271

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 15  SYGRQQWGIFRNGRKPDGA 71
           SY RQ+WG  R  + PDGA
Sbjct: 69  SYDRQRWGFRRAAQAPDGA 87

>PPNK2_SYNP6 (Q5MZV1) Probable inorganic polyphosphate/ATP-NAD kinase 2 (EC|
           2.7.1.23) (Poly(P)/ATP NAD kinase 2)
          Length = 306

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 225 LRPIIPDNACILCLTAAAGTELADAYSSDTVIVSSP 118
           ++P  PD   +  L      E+ D Y  D +IVS+P
Sbjct: 153 VKPAAPDRMSVCILEMEVDGEIIDQYQGDGLIVSTP 188

>NCOR2_MOUSE (Q9WU42) Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator|
            of retinoic acid and thyroid hormone receptor) (SMRT)
            (SMRTe) (Thyroid-, retinoic-acid-receptor-associated
            corepressor) (T3 receptor-associating factor) (TRAC)
          Length = 2472

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 23/65 (35%), Positives = 29/65 (44%)
 Frame = -2

Query: 245  KSHLQTLYAQSFRITLASSVLPRLPAQS*PMLIPQIPSLFLLREKKLTTRRPSTSTRHCS 66
            +S L   YA   R  +  S +P LP    P   P  P+  + R   L T  P  S+RH S
Sbjct: 1688 ESSLALNYAAGPRGIIDLSQVPHLPVLVPPT--PGTPATAIDRLAYLPTAPPPFSSRHSS 1745

Query: 65   VRLSP 51
              LSP
Sbjct: 1746 SPLSP 1750

>POL_AVIRE (P03360) Pol polyprotein [Contains: Reverse|
           transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
           (RT); Integrase (IN)] (Fragment)
          Length = 473

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 118 EKRS*RPVGLPPPRGIAPSGFRPLRK 41
           E R  R +GLPPP G AP    P R+
Sbjct: 304 EDRDRRGLGLPPPSGFAPGTVYPGRE 329


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,097,719
Number of Sequences: 219361
Number of extensions: 713940
Number of successful extensions: 2208
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2206
length of database: 80,573,946
effective HSP length: 59
effective length of database: 67,631,647
effective search space used: 1623159528
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)