ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet50d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DUS8_MOUSE (O09112) Dual specificity protein phosphatase 8 (EC 3... 32 0.45
2DPOD3_HUMAN (Q15054) DNA polymerase delta subunit 3 (DNA polymer... 31 0.99
3SYI_THIDA (Q3SHS3) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 30 1.7
4LSD1_MOUSE (Q6ZQ88) Lysine-specific histone demethylase 1 (EC 1.... 30 2.2
5PDC2_CANAL (O60035) Protein PDC2 28 6.4
6NHS_HUMAN (Q6T4R5) Nance-Horan syndrome protein (Congenital cata... 28 8.4
7FAS_RAT (P12785) Fatty acid synthase (EC 2.3.1.85) [Includes: [A... 28 8.4
8SF3B2_HUMAN (Q13435) Splicing factor 3B subunit 2 (Spliceosome-a... 28 8.4
9LSD1_HUMAN (O60341) Lysine-specific histone demethylase 1 (EC 1.... 28 8.4
10FRIZ2_DROME (Q9VVX3) Protein frizzled-2 precursor (dFz2) 28 8.4
11FAS_MOUSE (P19096) Fatty acid synthase (EC 2.3.1.85) [Includes: ... 28 8.4
12SYL_ERWCT (Q6D7L6) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 28 8.4
13ANK3_HUMAN (Q12955) Ankyrin-3 (ANK-3) (Ankyrin-G) 28 8.4
14SYL_HAEDU (Q7VM66) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 28 8.4

>DUS8_MOUSE (O09112) Dual specificity protein phosphatase 8 (EC 3.1.3.48) (EC|
           3.1.3.16) (Neuronal tyrosine threonine phosphatase 1)
          Length = 663

 Score = 32.0 bits (71), Expect = 0.45
 Identities = 19/66 (28%), Positives = 27/66 (40%)
 Frame = -3

Query: 205 PPPEGVPLDGVPLPHPEAGEQASTTVGEESTSMARTSSAETFVDSIAATTCELWRSTESA 26
           P P   P  G+PLP        S   G E+ + AR  S     D+   +T     + +  
Sbjct: 316 PEPLMGPAAGIPLPRLPPSTSESAATGSEAATAAREGSPSAGGDAPIPSTAPATSALQQG 375

Query: 25  LRGVLL 8
           LRG+ L
Sbjct: 376 LRGLHL 381



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>DPOD3_HUMAN (Q15054) DNA polymerase delta subunit 3 (DNA polymerase delta|
           subunit p66)
          Length = 466

 Score = 30.8 bits (68), Expect = 0.99
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -3

Query: 205 PPPEGVPLDGVPLPHPEAGEQASTTVGEESTSMARTSSAETFVDSIAATTCELWRSTES 29
           PPP   PL+ VP   PE     S++ GE      R   ++T++D       E    +ES
Sbjct: 352 PPPPSPPLEPVPKTEPEPPSVKSSS-GENKRKRKRVLKSKTYLDGEGCIVTEKVYESES 409



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>SYI_THIDA (Q3SHS3) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 929

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 220 GEMLMPPPEGVPLDGVPLPHPEAGEQASTTVGEESTSMARTSSAET 83
           G  ++    G  L+G+PL HP    Q    VGE  T+ A T +  T
Sbjct: 287 GAEILAHTTGQMLEGLPLWHPFQDRQVPVIVGEHVTADAGTGAVHT 332



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>LSD1_MOUSE (Q6ZQ88) Lysine-specific histone demethylase 1 (EC 1.-.-.-) (Amine|
           oxidase flavin-containing domain protein 2) (AOF2
           protein) (BRAF35-HDAC complex protein BHC110)
          Length = 853

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = -3

Query: 202 PPEGVPLDGVPLPHPEAGEQASTTVGEESTSMARTSSAET 83
           PP   P  G+  P   AG QA  T G  S +   T  AET
Sbjct: 66  PPRASPPGGLAEPPGSAGPQAGPTAGPGSATPMETGIAET 105



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>PDC2_CANAL (O60035) Protein PDC2|
          Length = 836

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
 Frame = -3

Query: 205 PPPEGVPLDGVPLPHPEAGEQASTTVGEESTSMART-----SSAETFVDSIAATTCELWR 41
           PPP  VP+  VP+P P    Q   T   +  S +R      S+A   VD   A T  L  
Sbjct: 748 PPPPPVPVP-VPVPVPSVPSQVPATSFPQDVSSSRAVRAPMSTAAVDVDMATAITKLLEY 806

Query: 40  STESALR 20
           S  + L+
Sbjct: 807 SASNTLK 813



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>NHS_HUMAN (Q6T4R5) Nance-Horan syndrome protein (Congenital cataracts and|
           dental anomalies protein)
          Length = 1630

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -3

Query: 205 PPPEGVPLDGVPLPHPE---AGEQASTTVGEESTSMARTSSA 89
           PPP   P D    PH E   AGE+++  + E + +    SSA
Sbjct: 71  PPPLPAPADQTQPPHGEASVAGEESTAGIPEAAPAAGEASSA 112



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>FAS_RAT (P12785) Fatty acid synthase (EC 2.3.1.85) [Includes:|
           [Acyl-carrier-protein] S-acetyltransferase (EC
           2.3.1.38); [Acyl-carrier-protein] S-malonyltransferase
           (EC 2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase
           (EC 2.3.1.41); 3-oxoacyl-[acyl-ca
          Length = 2505

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = -3

Query: 166 PHPEAGEQASTTVGEES--TSMARTSSAETFVDSIAATTC---ELWRSTESAL 23
           P P +    ST++ E    +S+ARTSSAE  V+++ +       LW   E A+
Sbjct: 705 PRPRSARWLSTSIPEAQWQSSLARTSSAEYNVNNLVSPVLFQEALWHVPEHAV 757



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>SF3B2_HUMAN (Q13435) Splicing factor 3B subunit 2 (Spliceosome-associated|
           protein 145) (SAP 145) (SF3b150) (Pre-mRNA splicing
           factor SF3b 145 kDa subunit)
          Length = 872

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 220 GEMLMPPPEGVPLDGVPLPHPEAG 149
           G+   PPP    L G+P+P P  G
Sbjct: 52  GDKAAPPPMSAQLPGIPMPPPPLG 75



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>LSD1_HUMAN (O60341) Lysine-specific histone demethylase 1 (EC 1.-.-.-) (Amine|
           oxidase flavin-containing domain protein 2) (BRAF35-HDAC
           complex protein BHC110)
          Length = 852

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = -3

Query: 202 PPEGVPLDGVPLPHPEAGEQASTTVGEESTSMARTSSAET 83
           PP   P  G+  P   AG QA  TV   S +   T  AET
Sbjct: 65  PPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAET 104



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>FRIZ2_DROME (Q9VVX3) Protein frizzled-2 precursor (dFz2)|
          Length = 694

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 172 PLPHPEAGEQASTTVGEESTSMARTSSAETFVDSIAATT 56
           P+PHP AG      VG  + S+  T   +    S+A+T+
Sbjct: 639 PIPHPYAGSGMGMPVGSAAGSLLATPYTQAGGASVASTS 677



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>FAS_MOUSE (P19096) Fatty acid synthase (EC 2.3.1.85) [Includes:|
           [Acyl-carrier-protein] S-acetyltransferase (EC
           2.3.1.38); [Acyl-carrier-protein] S-malonyltransferase
           (EC 2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase
           (EC 2.3.1.41); 3-oxoacyl-[acyl-
          Length = 2504

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = -3

Query: 166 PHPEAGEQASTTVGEES--TSMARTSSAETFVDSIAATTC---ELWRSTESAL 23
           P P +    ST++ E    +S+ARTSSAE  V+++ +       LW   E A+
Sbjct: 705 PRPRSARWLSTSIPEAQWQSSLARTSSAEYNVNNLVSPVLFQEALWHIPEHAV 757



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>SYL_ERWCT (Q6D7L6) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 860

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -3

Query: 199 PEGVPLDGVPLPHPEAGEQASTTVGEESTSMARTSSAETFVDS 71
           PE V +DG+  P     E A TTV  +  ++  T + +TF++S
Sbjct: 455 PEDVVMDGITSPLKSNPEWAKTTVNGQ-PALRETDTFDTFMES 496



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>ANK3_HUMAN (Q12955) Ankyrin-3 (ANK-3) (Ankyrin-G)|
          Length = 4377

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 184  LDGVPLPHPEAGEQASTTVGEESTSMARTSSAETFVD 74
            + G P P PE  E++      +STS+ +T+  ET V+
Sbjct: 3193 IPGKPSPIPEVSEESEEEEQAKSTSLKQTTVEETAVE 3229



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>SYL_HAEDU (Q7VM66) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 861

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 199 PEGVPLDGVPLPHPEAGEQASTTVGEESTSMARTSSAETFVDS 71
           PE V +DGV  P     E A TT  E   ++  T + +TF++S
Sbjct: 455 PENVVMDGVQSPIKSDPEWAKTTY-EGQPALKETDTFDTFMES 496


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,493,937
Number of Sequences: 219361
Number of extensions: 316618
Number of successful extensions: 1891
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1885
length of database: 80,573,946
effective HSP length: 49
effective length of database: 69,825,257
effective search space used: 1675806168
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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