ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet50a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SRS1_ORYSA (P83649) Salt-stress root protein RS1 109 3e-24
2MOAA_ERWCT (Q6D3C7) Molybdenum cofactor biosynthesis protein A 29 4.9
3Y2543_HALSA (Q9HMH2) Protein Vng2543c 28 8.3

>SRS1_ORYSA (P83649) Salt-stress root protein RS1|
          Length = 204

 Score =  109 bits (272), Expect = 3e-24
 Identities = 62/116 (53%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
 Frame = +3

Query: 60  MTSVWKTKVLPGLSXXXXXXXXXXXXXEFLKSFNXXXXXXXXXXXXTELEPKVVETIEAS 239
           MTSVWKTKVL GL+             EFLKSFN            TELEPKVVE +E+S
Sbjct: 1   MTSVWKTKVLTGLNKLFDKDGKKAAAAEFLKSFNKEEIGKEIDDKKTELEPKVVEVVESS 60

Query: 240 PPE-XXXXXXXXXXXXXXXNSAAVIKFLDEMAKIGFPGAKLVSDAVVKSGTTPLSP 404
           PPE                N  AV KFL+E+AKI FPGAK VSDAV KSGTTPLSP
Sbjct: 61  PPEIKALLKDKKTASKIKKNGPAVTKFLEELAKIDFPGAKPVSDAVAKSGTTPLSP 116



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>MOAA_ERWCT (Q6D3C7) Molybdenum cofactor biosynthesis protein A|
          Length = 329

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 47  EGEEYDERMEDQGSPRAQQVLRQGWQEGRRRR 142
           EG E   R    G    QQ+L+QGWQ+ +R R
Sbjct: 198 EGGELFRRHHVSGEVIRQQLLQQGWQQQQRAR 229



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>Y2543_HALSA (Q9HMH2) Protein Vng2543c|
          Length = 210

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 410 RWRGEGRGAGLDHRVAHQLGSGETNLGHLVKE 315
           R RG  RG    H   H+LG+ +  LGH + E
Sbjct: 58  RGRGRLRGCAGAHGSIHELGNHDQQLGHAIVE 89


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,006,066
Number of Sequences: 219361
Number of extensions: 669634
Number of successful extensions: 2141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2140
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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