ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet50a02 |
|---|---|
| Clone Library Name | barley_pub |
>SGF1_BOMMO (Q17241) Silk gland factor 1 (SGF-1)| Length = 349 Score = 30.8 bits (68), Expect = 1.4 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Frame = +2 Query: 218 LQVAVKCKNAHGEYETKAVGAVDKSGAFGVPLSADL-LREDGELKHDCFAQLHSAPGHPC 394 L+ A K + HG + G+ DK G G SA ED E++ + AQLH+AP Sbjct: 217 LRQAQKAQQTHGHHG----GSHDKRGEHGHDKSAPPGPGEDKEMRDELLAQLHAAPELCL 272 Query: 395 PGQEP 409 P P Sbjct: 273 PEHTP 277
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 30.4 bits (67), Expect = 1.9 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 3/63 (4%) Frame = +3 Query: 3 STASSPSPTIFSKQPIPQWGLCLGVYWSSAFAPSWWR---PCSPMHRRRRQWSSAWPSAP 173 S ++SPSP K+ P+ + +G W S S R P P RRRR S A P P Sbjct: 524 SRSASPSPRKRQKETSPR--MQMGKRWQSPVTKSSRRRRSPSPPPARRRRSPSPAPPPPP 581 Query: 174 TAP 182 P Sbjct: 582 PPP 584
>PRP4B_MOUSE (Q61136) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)| (PRP4 pre-mRNA-processing factor 4 homolog) (Pre-mRNA protein kinase) Length = 1007 Score = 30.0 bits (66), Expect = 2.4 Identities = 20/53 (37%), Positives = 24/53 (45%) Frame = +3 Query: 111 RPCSPMHRRRRQWSSAWPSAPTAPGRT*KLRLLSQAFRWLSSARTPTASTRPR 269 R SP+ RR S PS +PGR K R L + R R + TRPR Sbjct: 365 RSRSPLLNDRRSKQSKSPSRTLSPGRRAKSRSLERKRREPERRRLSSPRTRPR 417
>PRP4B_HUMAN (Q13523) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)| (PRP4 pre-mRNA-processing factor 4 homolog) (PRP4 kinase) Length = 1007 Score = 30.0 bits (66), Expect = 2.4 Identities = 20/53 (37%), Positives = 24/53 (45%) Frame = +3 Query: 111 RPCSPMHRRRRQWSSAWPSAPTAPGRT*KLRLLSQAFRWLSSARTPTASTRPR 269 R SP+ RR S PS +PGR K R L + R R + TRPR Sbjct: 365 RSRSPLLNDRRSKQSKSPSRTLSPGRRAKSRSLERKRREPERRRLSSPRTRPR 417
>TEGU_SHV21 (Q01056) Probable large tegument protein| Length = 2469 Score = 29.3 bits (64), Expect = 4.1 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = +2 Query: 323 LLREDGELKHDCFAQLHSAPGH 388 +LR G+L H+ +AQLH PG+ Sbjct: 71 ILRRSGQLGHNQYAQLHHIPGY 92
>YN94_YEAST (P53751) Putative 125.2 kDa membrane glycoprotein in BIO3-HXT17| intergenic region Length = 1116 Score = 28.9 bits (63), Expect = 5.4 Identities = 27/81 (33%), Positives = 35/81 (43%) Frame = +2 Query: 164 KCADCTRKNMKAEAAFAGLQVAVKCKNAHGEYETKAVGAVDKSGAFGVPLSADLLREDGE 343 K +D T K +K ++ G + K E + D SG +PLS G Sbjct: 862 KASDGTCKLVKGLSSANGADICKK--------EPDLIEYYDSSGYRKIPLSTC----KGG 909 Query: 344 LKHDCFAQLHSAPGHPCPGQE 406 LK D H AP HPCPG+E Sbjct: 910 LKLDA----HLAP-HPCPGKE 925
>ARGJ_HELHP (Q93EJ3) Arginine biosynthesis bifunctional protein argJ [Includes:| Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine acetyltransferase) (Ornithine transacetylase) (OATase); Amino-acid acetyltransferase (EC 2.3.1.1) (N-acetylglutamate syn Length = 404 Score = 28.9 bits (63), Expect = 5.4 Identities = 16/50 (32%), Positives = 26/50 (52%) Frame = +2 Query: 194 KAEAAFAGLQVAVKCKNAHGEYETKAVGAVDKSGAFGVPLSADLLREDGE 343 K A+FA KC+NAH T+A A+ + AF ++ + ++GE Sbjct: 131 KIIASFASFDFNAKCENAH----TRAADAIRTTDAFSKEIALRVRLDNGE 176
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 28.9 bits (63), Expect = 5.4 Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 7/69 (10%) Frame = +3 Query: 3 STASSPSPTIFSKQPIPQWGLCLGVYWSSAFAPSWWR---PCSPMHRRRRQWSSAWP--- 164 S ++SPSP K+ P+ + +G W S S R P P RRRR S A P Sbjct: 526 SRSASPSPRKRQKETSPR--MQMGKRWQSPVTKSGRRRRSPSPPPTRRRRSPSPAPPPRR 583 Query: 165 -SAPTAPGR 188 PT P R Sbjct: 584 RRTPTPPPR 592
>KPCI_PONPY (Q5R4K9) Protein kinase C iota type (EC 2.7.11.13) (nPKC-iota)| Length = 587 Score = 28.9 bits (63), Expect = 5.4 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +2 Query: 326 LREDGELKHDCFAQLHSAPGHPCPGQEPSLIVR 424 L +D EL F + PG PCPG++ S+ R Sbjct: 86 LNKDSELLIHVFPCVPERPGMPCPGEDKSIYRR 118
>KPCI_HUMAN (P41743) Protein kinase C iota type (EC 2.7.11.13) (nPKC-iota)| (Atypical protein kinase C-lambda/iota) (aPKC-lambda/iota) (PRKC-lambda/iota) Length = 587 Score = 28.9 bits (63), Expect = 5.4 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +2 Query: 326 LREDGELKHDCFAQLHSAPGHPCPGQEPSLIVR 424 L +D EL F + PG PCPG++ S+ R Sbjct: 86 LNKDSELLIHVFPCVPERPGMPCPGEDKSIYRR 118
>KPCI_MOUSE (Q62074) Protein kinase C iota type (EC 2.7.11.13) (nPKC-iota)| (Atypical protein kinase C-lambda/iota) (aPKC-lambda/iota) Length = 586 Score = 28.9 bits (63), Expect = 5.4 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +2 Query: 326 LREDGELKHDCFAQLHSAPGHPCPGQEPSLIVR 424 L +D EL F + PG PCPG++ S+ R Sbjct: 86 LNKDSELLIHVFPCVPERPGMPCPGEDKSIYRR 118
>YJW2_YEAST (P40890) Putative membrane glycoprotein YJL222W precursor| Length = 1549 Score = 28.9 bits (63), Expect = 5.4 Identities = 27/81 (33%), Positives = 35/81 (43%) Frame = +2 Query: 164 KCADCTRKNMKAEAAFAGLQVAVKCKNAHGEYETKAVGAVDKSGAFGVPLSADLLREDGE 343 K +D T K +K ++ G + K E + D SG +PLS G Sbjct: 1295 KASDGTCKLVKGLSSANGADICKK--------EPDLIEYYDSSGYRKIPLSTC----KGG 1342 Query: 344 LKHDCFAQLHSAPGHPCPGQE 406 LK D H AP HPCPG+E Sbjct: 1343 LKLDA----HLAP-HPCPGKE 1358
>YIR3_YEAST (P40438) Putative membrane glycoprotein YIL173W precursor| Length = 1549 Score = 28.9 bits (63), Expect = 5.4 Identities = 27/81 (33%), Positives = 35/81 (43%) Frame = +2 Query: 164 KCADCTRKNMKAEAAFAGLQVAVKCKNAHGEYETKAVGAVDKSGAFGVPLSADLLREDGE 343 K +D T K +K ++ G + K E + D SG +PLS G Sbjct: 1295 KASDGTCKLVKGLSSANGADICKK--------EPDLIEYYDSSGYRKIPLSTC----KGG 1342 Query: 344 LKHDCFAQLHSAPGHPCPGQE 406 LK D H AP HPCPG+E Sbjct: 1343 LKLDA----HLAP-HPCPGKE 1358
>ADA15_MOUSE (O88839) ADAM 15 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 15) (Metalloproteinase-like, disintegrin-like, and cysteine-rich protein 15) (MDC-15) (Metalloprotease RGD disintegrin protein) (Metargidin) (AD56) Length = 864 Score = 28.5 bits (62), Expect = 7.1 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 5/74 (6%) Frame = +2 Query: 206 AFAGLQVAVKCKNAHGEYETKAVGAVDKSGAFGVPLSADLLREDGELKHDCFAQL---HS 376 +F+G V + +N+ + + D SG + S +L + H+ L H Sbjct: 309 SFSGPMVGMAIQNS--------ICSPDFSGGVNMDHSTSILGVASSIAHELGHSLGLDHD 360 Query: 377 APGH--PCPGQEPS 412 +PGH PCPG P+ Sbjct: 361 SPGHSCPCPGPAPA 374
>KPCI_BRARE (Q90XF2) Protein kinase C iota type (EC 2.7.11.13) (nPKC-iota)| (Atypical protein kinase C-lambda/iota) (aPKC-lambda/iota) (Heart and soul protein) Length = 588 Score = 28.5 bits (62), Expect = 7.1 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +2 Query: 326 LREDGELKHDCFAQLHSAPGHPCPGQEPSLIVR 424 L +D EL F + PG PCPG++ S+ R Sbjct: 88 LNKDSELIIHVFPCVPEKPGMPCPGEDKSIYRR 120
>ZN500_HUMAN (O60304) Zinc finger protein 500| Length = 480 Score = 28.5 bits (62), Expect = 7.1 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%) Frame = +2 Query: 329 REDGELKHDCFAQLHS---APGHPCPGQEPS 412 RED L+ + + L + PGHP PGQ P+ Sbjct: 266 REDAPLRMEWYRVLSARCQGPGHPLPGQRPA 296
>KPCZ_RABIT (O19111) Protein kinase C zeta type (EC 2.7.11.13) (nPKC-zeta)| Length = 591 Score = 28.5 bits (62), Expect = 7.1 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +2 Query: 329 REDGELKHDCFAQLHSAPGHPCPGQEPSLIVR 424 R+DG + H F PG PCPG++ S+ R Sbjct: 87 RDDGLILH-VFPSTPEQPGMPCPGEDKSIYRR 117
>SYC_ZYMMO (Q5NR44) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 516 Score = 28.5 bits (62), Expect = 7.1 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +3 Query: 108 WRPCSPMHRRRRQWSSAWPSAPTAPG 185 WR SP +R+ +W S W P APG Sbjct: 197 WRRSSPDEKRQMEWISPW--GPGAPG 220
>US02_HHV11 (P06485) Protein US2| Length = 290 Score = 28.1 bits (61), Expect = 9.2 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 2/74 (2%) Frame = +3 Query: 69 LGVYWSSAFAPSWW--RPCSPMHRRRRQWSSAWPSAPTAPGRT*KLRLLSQAFRWLSSAR 242 LGV + + P W P + R +W+ AW P AP L L + + Sbjct: 144 LGVRFIAIKTPDAWVGEPWAVPTRFLPEWTVAWTPFPAAPNH--PLETLLSRYEYQYGVV 201 Query: 243 TPTASTRPRPSERW 284 P + R R RW Sbjct: 202 LPGTNGRERDCMRW 215 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,386,947 Number of Sequences: 219361 Number of extensions: 868301 Number of successful extensions: 2572 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2501 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2570 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
