ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet49g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF532989.1| Mus musculus phosphoinositide 3 kinase P110delta ... 38 1.9
2gb|U18472.1|PCU18472 Primate calicivirus 2C-RNA helicase protein... 38 1.9
3gb|AC161050.2| Mus musculus BAC clone RP23-477C12 from chromosom... 36 7.5
4gb|AC159545.18| Mus musculus 6 BAC RP23-244E8 (Roswell Park Canc... 36 7.5
5gb|AC098706.3| Mus musculus BAC clone RP23-1I11 from 14, complet... 36 7.5
6emb|CR382289.17| Zebrafish DNA sequence from clone DKEY-161J10 i... 36 7.5
7emb|CR855335.5| Zebrafish DNA sequence from clone CH211-171A1 in... 36 7.5
8gb|AC016588.9| Homo sapiens chromosome 19 clone CTD-3113P16, com... 36 7.5
9emb|BX323875.15| Zebrafish DNA sequence from clone CH211-135L21 ... 36 7.5
10gb|AC159622.2| Mus musculus BAC clone RP24-289D12 from chromosom... 36 7.5
11dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 36 7.5
12gb|AC006091.10|AC006091 Drosophila melanogaster, chromosome 3R, ... 36 7.5
13gb|AC008141.3|AC008141 Drosophila melanogaster, chromosome 3R, r... 36 7.5
14emb|BX000697.7| Zebrafish DNA sequence from clone CH211-120M13 i... 36 7.5
15gb|AE003725.2| Drosophila melanogaster chromosome 3R, section 63... 36 7.5
16emb|CT573047.6| Mouse DNA sequence from clone RP23-73L5 on chrom... 36 7.5
17gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 36 7.5
18emb|AL731740.4|CNS08C7P Oryza sativa chromosome 12, . BAC OSJNBb... 36 7.5
19gb|AC153381.2| Mus musculus 6 BAC RP23-397L23 (Roswell Park Canc... 36 7.5

>gb|AF532989.1| Mus musculus phosphoinositide 3 kinase P110delta (Pik3cd) gene,
            complete cds
          Length = 21152

 Score = 38.2 bits (19), Expect = 1.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 19   ctactcacaacaatgttct 37
            |||||||||||||||||||
Sbjct: 8028 ctactcacaacaatgttct 8010



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>gb|U18472.1|PCU18472 Primate calicivirus 2C-RNA helicase protein gene, partial cds
          Length = 301

 Score = 38.2 bits (19), Expect = 1.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 23  tcacaacaatgttctacta 41
           |||||||||||||||||||
Sbjct: 259 tcacaacaatgttctacta 277



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>gb|AC161050.2| Mus musculus BAC clone RP23-477C12 from chromosome 12, complete sequence
          Length = 197084

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 30     aatgttctactatgtcattctc 51
              ||||||||||| ||||||||||
Sbjct: 171455 aatgttctactctgtcattctc 171434



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>gb|AC159545.18| Mus musculus 6 BAC RP23-244E8 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 172372

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 4     tcatctccccatgcactactca 25
             ||||||||| ||||||||||||
Sbjct: 82715 tcatctccctatgcactactca 82694



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>gb|AC098706.3| Mus musculus BAC clone RP23-1I11 from 14, complete sequence
          Length = 234326

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 27    aacaatgttctactatgt 44
             ||||||||||||||||||
Sbjct: 44563 aacaatgttctactatgt 44580



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>emb|CR382289.17| Zebrafish DNA sequence from clone DKEY-161J10 in linkage group 10,
              complete sequence
          Length = 187296

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 18     actactcacaacaatgttctac 39
              |||||||||| |||||||||||
Sbjct: 179706 actactcacatcaatgttctac 179685



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>emb|CR855335.5| Zebrafish DNA sequence from clone CH211-171A1 in linkage group 18,
             complete sequence
          Length = 51125

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 27    aacaatgttctactatgt 44
             ||||||||||||||||||
Sbjct: 34312 aacaatgttctactatgt 34295



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>gb|AC016588.9| Homo sapiens chromosome 19 clone CTD-3113P16, complete sequence
          Length = 144578

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 10     ccccatgcactactcaca 27
              ||||||||||||||||||
Sbjct: 116386 ccccatgcactactcaca 116369



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>emb|BX323875.15| Zebrafish DNA sequence from clone CH211-135L21 in linkage group 17,
             complete sequence
          Length = 173617

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 27    aacaatgttctactatgtcatt 48
             |||||||||||||| |||||||
Sbjct: 62749 aacaatgttctactttgtcatt 62728



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>gb|AC159622.2| Mus musculus BAC clone RP24-289D12 from chromosome 12, complete sequence
          Length = 174662

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 30     aatgttctactatgtcattctc 51
              ||||||||||| ||||||||||
Sbjct: 108296 aatgttctactctgtcattctc 108317



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 4       tcatctccccatgcacta 21
               ||||||||||||||||||
Sbjct: 6861146 tcatctccccatgcacta 6861163



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>gb|AC006091.10|AC006091 Drosophila melanogaster, chromosome 3R, region 91F1-91F13, BAC clone
              BACR48G05, complete sequence
          Length = 174118

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 25     acaacaatgttctactat 42
              ||||||||||||||||||
Sbjct: 157483 acaacaatgttctactat 157466



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>gb|AC008141.3|AC008141 Drosophila melanogaster, chromosome 3R, region 91F-91F, BAC clone
             BACR17F04, complete sequence
          Length = 133863

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 25    acaacaatgttctactat 42
             ||||||||||||||||||
Sbjct: 79006 acaacaatgttctactat 78989



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>emb|BX000697.7| Zebrafish DNA sequence from clone CH211-120M13 in linkage group 18,
             complete sequence
          Length = 186826

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 27    aacaatgttctactatgt 44
             ||||||||||||||||||
Sbjct: 34202 aacaatgttctactatgt 34185



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>gb|AE003725.2| Drosophila melanogaster chromosome 3R, section 63 of 118 of the complete
              sequence
          Length = 253323

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 25     acaacaatgttctactat 42
              ||||||||||||||||||
Sbjct: 115125 acaacaatgttctactat 115108



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>emb|CT573047.6| Mouse DNA sequence from clone RP23-73L5 on chromosome 14, complete
              sequence
          Length = 211944

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 27     aacaatgttctactatgt 44
              ||||||||||||||||||
Sbjct: 189631 aacaatgttctactatgt 189648



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 4       tcatctccccatgcacta 21
               ||||||||||||||||||
Sbjct: 6861025 tcatctccccatgcacta 6861042



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>emb|AL731740.4|CNS08C7P Oryza sativa chromosome 12, . BAC OSJNBb0001P19 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 144563

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 4      tcatctccccatgcacta 21
              ||||||||||||||||||
Sbjct: 100892 tcatctccccatgcacta 100875



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>gb|AC153381.2| Mus musculus 6 BAC RP23-397L23 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 196902

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 4     tcatctccccatgcactactca 25
             ||||||||| ||||||||||||
Sbjct: 38382 tcatctccctatgcactactca 38403


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 317,399
Number of Sequences: 3902068
Number of extensions: 317399
Number of successful extensions: 80246
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80183
Number of HSP's gapped (non-prelim): 63
length of query: 54
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 34
effective length of database: 17,155,003,908
effective search space: 583270132872
effective search space used: 583270132872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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