>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 261

 Score = 32.3 bits (72), Expect = 0.37
 Identities = 17/27 (62%), Positives = 19/27 (70%)
 Frame = +3

Query: 72  MAATTMALSSPAMKLAGASYVLGGGRI 152
           MAA TMALSSPA+    A+ V G GRI
Sbjct: 1   MAAATMALSSPALAGKAAAKVFGEGRI 27

>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (CAB-140) (LHCP)
          Length = 267

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 20/33 (60%), Positives = 24/33 (72%), Gaps = 6/33 (18%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRI 152
           MAA+TMALSSP     A+KL+  AS VLG GR+
Sbjct: 1   MAASTMALSSPAFAGKAVKLSPAASEVLGSGRV 33

>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 266

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 20/33 (60%), Positives = 24/33 (72%), Gaps = 6/33 (18%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRI 152
           MAA+TMALSSP     A+KL+ GAS V G GR+
Sbjct: 1   MAASTMALSSPAFAGKAVKLSPGASEVFGTGRV 33

>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast|
           precursor (LHCII type I CAB-165/180)
          Length = 267

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
 Frame = +3

Query: 72  MAATTMALSSPAMK------LAGASYVLGGGRI 152
           MAA+TMALSSPA           AS VLG GR+
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRV 33

>CB2C_LYCES (P14275) Chlorophyll a-b binding protein 1C, chloroplast precursor|
           (LHCII type I CAB-1C) (LHCP) (Fragments)
          Length = 265

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 19/33 (57%), Positives = 22/33 (66%), Gaps = 6/33 (18%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRI 152
           MAA TMALSSP     A+KL+  AS + G GRI
Sbjct: 1   MAAATMALSSPSFAGQAVKLSPSASEISGNGRI 33

>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor|
           (LHCII type I CAB-1B) (LHCP)
          Length = 265

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 19/33 (57%), Positives = 22/33 (66%), Gaps = 6/33 (18%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRI 152
           MAA TMALSSP     A+KL+  AS + G GRI
Sbjct: 1   MAAATMALSSPSFAGQAVKLSPSASEISGNGRI 33

>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 256

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 18/32 (56%), Positives = 22/32 (68%), Gaps = 5/32 (15%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLAGASYVLGGGRI 152
           MAA+TMALSS      AMKLA ++  LG GR+
Sbjct: 1   MAASTMALSSSSLAGQAMKLAPSTPELGVGRV 32

>RTP3_MOUSE (Q5QGU6) Receptor-transporting protein 3 (Transmembrane protein 7)|
          Length = 474

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 16/61 (26%)
 Frame = -2

Query: 145 PPPRTYEAPASFIAGEESAMVVAAIAC---------CRME-------QSKLLMCGCCCD* 14
           PP  +Y  P S      S+ V+  I+          C++E       QS+   CG CC+ 
Sbjct: 377 PPTSSYVPPTSSYVPPTSSSVIVPISSSWRLPENTICQVERNSHIHPQSQSSCCGACCES 436

Query: 13  W 11
           W
Sbjct: 437 W 437


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.310    0.122    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,573,051
Number of Sequences: 219361
Number of extensions: 152531
Number of successful extensions: 418
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 80,573,946
effective HSP length: 26
effective length of database: 74,870,560
effective search space used: 1796893440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)