ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet49e08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467824.1| Oryza sativa (japonica cultivar-group), mRNA 50 9e-04
2ref|XM_507531.1| PREDICTED Oryza sativa (japonica cultivar-group... 50 9e-04
3ref|XM_506974.2| PREDICTED Oryza sativa (japonica cultivar-group... 50 9e-04
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 50 9e-04
5dbj|AP004774.3| Oryza sativa (japonica cultivar-group) genomic D... 50 9e-04
6dbj|AK104401.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 9e-04
7dbj|AK072946.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 9e-04
8dbj|AK061027.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 9e-04
9dbj|AK060441.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 9e-04
10gb|AC158584.9| Mus musculus chromosome 7, clone RP24-157G13, com... 40 0.85
11gb|AC101986.10| Mus musculus chromosome 7, clone RP24-353K18, co... 40 0.85
12ref|NM_133259.2| Homo sapiens leucine-rich PPR-motif containing ... 38 3.4
13ref|XM_515441.1| PREDICTED: Pan troglodytes LOC459192 (LOC459192... 38 3.4
14ref|XM_581841.2| PREDICTED: Bos taurus similar to Stabilin-1 pre... 38 3.4
15gb|AC137107.7| Mus musculus chromosome 5, clone RP23-274I21, com... 38 3.4
16gb|BC026034.1| Homo sapiens leucine-rich PPR-motif containing, m... 38 3.4
17emb|AL391600.16| Human DNA sequence from clone RP11-210L5 on chr... 38 3.4
18gb|BC050311.1| Homo sapiens leucine-rich PPR-motif containing, m... 38 3.4
19gb|AY289212.1| Homo sapiens leucine-rich PPR motif-containing pr... 38 3.4
20dbj|AK125781.1| Homo sapiens cDNA FLJ43793 fis, clone TESTI40000... 38 3.4
21gb|AC127379.3| Homo sapiens BAC clone RP11-808E20 from 2, comple... 38 3.4
22emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 38 3.4 
>ref|XM_467824.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1059

 Score = 50.1 bits (25), Expect = 9e-04
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 51 cgctcatggcctccagcccaatcccgtcg 79
          ||||||||||||||| |||||||||||||
Sbjct: 36 cgctcatggcctccaacccaatcccgtcg 64
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>ref|XM_507531.1| PREDICTED Oryza sativa (japonica cultivar-group), P0431B06.35 mRNA
          Length = 1115

 Score = 50.1 bits (25), Expect = 9e-04
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 51  cgctcatggcctccagcccaatcccgtcg 79
           ||||||||||||||| |||||||||||||
Sbjct: 89  cgctcatggcctccaacccaatcccgtcg 117
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>ref|XM_506974.2| PREDICTED Oryza sativa (japonica cultivar-group), P0431B06.35 mRNA
          Length = 1133

 Score = 50.1 bits (25), Expect = 9e-04
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 51  cgctcatggcctccagcccaatcccgtcg 79
           ||||||||||||||| |||||||||||||
Sbjct: 94  cgctcatggcctccaacccaatcccgtcg 122
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 50.1 bits (25), Expect = 9e-04
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 51       cgctcatggcctccagcccaatcccgtcg 79
                ||||||||||||||| |||||||||||||
Sbjct: 31609804 cgctcatggcctccaacccaatcccgtcg 31609832
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>dbj|AP004774.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0431B06
          Length = 154796

 Score = 50.1 bits (25), Expect = 9e-04
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                           
Query: 51     cgctcatggcctccagcccaatcccgtcg 79
              ||||||||||||||| |||||||||||||
Sbjct: 100364 cgctcatggcctccaacccaatcccgtcg 100392
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>dbj|AK104401.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-E07,
          full insert sequence
          Length = 1059

 Score = 50.1 bits (25), Expect = 9e-04
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 51 cgctcatggcctccagcccaatcccgtcg 79
          ||||||||||||||| |||||||||||||
Sbjct: 36 cgctcatggcctccaacccaatcccgtcg 64
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>dbj|AK072946.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150D22, full
           insert sequence
          Length = 1132

 Score = 50.1 bits (25), Expect = 9e-04
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 51  cgctcatggcctccagcccaatcccgtcg 79
           ||||||||||||||| |||||||||||||
Sbjct: 93  cgctcatggcctccaacccaatcccgtcg 121
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>dbj|AK061027.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-F11, full
           insert sequence
          Length = 1115

 Score = 50.1 bits (25), Expect = 9e-04
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 51  cgctcatggcctccagcccaatcccgtcg 79
           ||||||||||||||| |||||||||||||
Sbjct: 89  cgctcatggcctccaacccaatcccgtcg 117
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>dbj|AK060441.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-E03,
          full insert sequence
          Length = 1080

 Score = 50.1 bits (25), Expect = 9e-04
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 51 cgctcatggcctccagcccaatcccgtcg 79
          ||||||||||||||| |||||||||||||
Sbjct: 32 cgctcatggcctccaacccaatcccgtcg 60
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>gb|AC158584.9| Mus musculus chromosome 7, clone RP24-157G13, complete sequence
          Length = 183369

 Score = 40.1 bits (20), Expect = 0.85
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     cacagtttggagataatcat 24
             ||||||||||||||||||||
Sbjct: 69994 cacagtttggagataatcat 69975
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>gb|AC101986.10| Mus musculus chromosome 7, clone RP24-353K18, complete sequence
          Length = 187803

 Score = 40.1 bits (20), Expect = 0.85
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     cacagtttggagataatcat 24
             ||||||||||||||||||||
Sbjct: 98983 cacagtttggagataatcat 98964
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>ref|NM_133259.2| Homo sapiens leucine-rich PPR-motif containing (LRPPRC), mRNA
          Length = 5095

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 25  catgccgcctcctatctccccgc 47
           ||||||||||||||||| |||||
Sbjct: 161 catgccgcctcctatctgcccgc 183
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>ref|XM_515441.1| PREDICTED: Pan troglodytes LOC459192 (LOC459192), mRNA
          Length = 1472

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 25  catgccgcctcctatctccccgc 47
           ||||||||||||||||| |||||
Sbjct: 748 catgccgcctcctatctgcccgc 770
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>ref|XM_581841.2| PREDICTED: Bos taurus similar to Stabilin-1 precursor (FEEL-1
            protein) (MS-1 antigen) (LOC505543), mRNA
          Length = 8135

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 40   ctccccgctgccgctcatg 58
            |||||||||||||||||||
Sbjct: 6315 ctccccgctgccgctcatg 6297
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>gb|AC137107.7| Mus musculus chromosome 5, clone RP23-274I21, complete sequence
          Length = 182588

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 52     gctcatggcctccagccca 70
              |||||||||||||||||||
Sbjct: 102891 gctcatggcctccagccca 102909
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>gb|BC026034.1| Homo sapiens leucine-rich PPR-motif containing, mRNA (cDNA clone
           IMAGE:4904213), containing frame-shift errors
          Length = 1918

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 25  catgccgcctcctatctccccgc 47
           ||||||||||||||||| |||||
Sbjct: 134 catgccgcctcctatctgcccgc 156
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>emb|AL391600.16| Human DNA sequence from clone RP11-210L5 on chromosome 13, complete
              sequence
          Length = 176085

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 56     atggcctccagcccaatcc 74
              |||||||||||||||||||
Sbjct: 112853 atggcctccagcccaatcc 112835
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>gb|BC050311.1| Homo sapiens leucine-rich PPR-motif containing, mRNA (cDNA clone
           MGC:48347 IMAGE:4827456), complete cds
          Length = 4313

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 25  catgccgcctcctatctccccgc 47
           ||||||||||||||||| |||||
Sbjct: 112 catgccgcctcctatctgcccgc 134
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>gb|AY289212.1| Homo sapiens leucine-rich PPR motif-containing protein mRNA,
           complete cds
          Length = 5095

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 25  catgccgcctcctatctccccgc 47
           ||||||||||||||||| |||||
Sbjct: 161 catgccgcctcctatctgcccgc 183
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>dbj|AK125781.1| Homo sapiens cDNA FLJ43793 fis, clone TESTI4000014, highly  similar
           to 130 kDa leucine-rich protein
          Length = 5069

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 25  catgccgcctcctatctccccgc 47
           ||||||||||||||||| |||||
Sbjct: 132 catgccgcctcctatctgcccgc 154
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>gb|AC127379.3| Homo sapiens BAC clone RP11-808E20 from 2, complete sequence
          Length = 67291

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 25    catgccgcctcctatctccccgc 47
             ||||||||||||||||| |||||
Sbjct: 38689 catgccgcctcctatctgcccgc 38667
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 59     gcctccagcccaatcccgtcgac 81
              ||||||||||| |||||||||||
Sbjct: 227861 gcctccagccccatcccgtcgac 227883


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 649,784
Number of Sequences: 3902068
Number of extensions: 649784
Number of successful extensions: 41411
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41363
Number of HSP's gapped (non-prelim): 48
length of query: 81
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 60
effective length of database: 17,151,101,840
effective search space: 1029066110400
effective search space used: 1029066110400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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